Hucka, M. and Finney, A. and Sauro, H. M. and Bolouri, H. and Doyle, J. C. and Kitano, H. (2003) The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics, 19 (4). pp. 524-531. ISSN 1367-4803 http://resolver.caltech.edu/CaltechAUTHORS:20111020-083352718
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Abstract
Motivation: Molecular biotechnology now makes it possible to build elaborate systems models, but the systems biology community needs information standards if models are to be shared, evaluated and developed cooperatively. Results: We summarize the Systems Biology Markup Language (SBML) Level 1, a free, open, XML-based format for representing biochemical reaction networks. SBML is a software-independent language for describing models common to research in many areas of computational biology, including cell signaling pathways, metabolic pathways, gene regulation, and others.
| Item Type: | Article | ||||||||
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| Additional Information: | © 2003 Oxford University Press. Received on May 17, 2002; revised on October 15, 2002; accepted on October 25, 2002. This work has been supported by: the Japan Science and Technology Corporation’s ERATO Kitano Symbiotic Systems Project; an International Joint Research Grant from the NEDO/Japanese Ministry of Economy, Trade and Industry; and the Rice Genome and Simulation Project from the Japanese Ministry of Agriculture. | ||||||||
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| Record Number: | CaltechAUTHORS:20111020-083352718 | ||||||||
| Persistent URL: | http://resolver.caltech.edu/CaltechAUTHORS:20111020-083352718 | ||||||||
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| Usage Policy: | No commercial reproduction, distribution, display or performance rights in this work are provided. | ||||||||
| ID Code: | 27322 | ||||||||
| Collection: | CaltechAUTHORS | ||||||||
| Deposited By: | Tony Diaz | ||||||||
| Deposited On: | 24 Oct 2011 22:25 | ||||||||
| Last Modified: | 24 Oct 2011 22:25 |
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