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The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

Hucka, M. and Finney, A. and Sauro, H. M. and Bolouri, H. and Doyle, J. C. and Kitano, H. (2003) The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics, 19 (4). pp. 524-531. ISSN 1367-4803. http://resolver.caltech.edu/CaltechAUTHORS:20111020-083352718

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Abstract

Motivation: Molecular biotechnology now makes it possible to build elaborate systems models, but the systems biology community needs information standards if models are to be shared, evaluated and developed cooperatively. Results: We summarize the Systems Biology Markup Language (SBML) Level 1, a free, open, XML-based format for representing biochemical reaction networks. SBML is a software-independent language for describing models common to research in many areas of computational biology, including cell signaling pathways, metabolic pathways, gene regulation, and others.


Item Type:Article
Related URLs:
URLURL TypeDescription
http://dx.doi.org/10.1093/bioinformatics/btg015 DOIUNSPECIFIED
http://bioinformatics.oxfordjournals.org/content/19/4/524.abstractPublisherUNSPECIFIED
Additional Information:© 2003 Oxford University Press. Received on May 17, 2002; revised on October 15, 2002; accepted on October 25, 2002. This work has been supported by: the Japan Science and Technology Corporation’s ERATO Kitano Symbiotic Systems Project; an International Joint Research Grant from the NEDO/Japanese Ministry of Economy, Trade and Industry; and the Rice Genome and Simulation Project from the Japanese Ministry of Agriculture.
Funders:
Funding AgencyGrant Number
Japan Science and Technology Corporation ERATO Kitano Symbiotic Systems ProjectUNSPECIFIED
NEDO/Japanese Ministry of Economy, Trade and Industry International Joint Research GrantUNSPECIFIED
Japanese Ministry of Agriculture Rice Genome and Simulation ProjectUNSPECIFIED
Record Number:CaltechAUTHORS:20111020-083352718
Persistent URL:http://resolver.caltech.edu/CaltechAUTHORS:20111020-083352718
Usage Policy:No commercial reproduction, distribution, display or performance rights in this work are provided.
ID Code:27322
Collection:CaltechAUTHORS
Deposited By: Tony Diaz
Deposited On:24 Oct 2011 22:25
Last Modified:24 Oct 2011 22:25

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