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The Buoyant Behavior of Viral and Bacterial DNA in Alkaline CsCl

Vinograd, Jerome and Morris, Janet and Davidson, Norman and Dove, William F., Jr. (1963) The Buoyant Behavior of Viral and Bacterial DNA in Alkaline CsCl. Proceedings of the National Academy of Sciences of the United States of America, 49 (1). pp. 12-17. ISSN 0027-8424. http://resolver.caltech.edu/CaltechAUTHORS:20120816-144654347

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Abstract

In equilibrium density gradient centrifugation, the banding polymer species is electrically neutral. The banding species for a negative polyelectrolyte with a polyanion P_(n)^(-z)n (where n is the degree of polymerization, and z the titration charge per monomer unit) in a CsCl salt gradient is CS_(zn)P_n. If the ion P_(n)^(-z)n is itself a weak acid, it may be titrated to the state P_(n)^(-(Zn+y)) by CsOH; the banding species is then Cs_(zn+y)P_n. Because of the large mass and high effective "density" of a Cs^+ ion, it is to be expected that the buoyant density in a CsCl gradient of a polymer acid will be increased by such a partial alkaline titration with CsOH. This expectation has been confirmed for polyglutamic acid (where z = 0 at low pH). The guanine and thymine monomer units of DNA are weak acids. The present communication is concerned with the increase in buoyant density of DNA in alkaline CsCl solutions. It is well known that the guanine and thymine protons are more readily titrated in denatured DNA than in native DNA. We find that the buoyant density of denatured DNA and of single strand ϕX-174 DNA gradually increases as the pH of the solution is increased beyond pH 9.8. The density of native DNA is not affected until a critical pH > 11 is reached, where the DNA abruptly denatures and increases in density. Similar increases in buoyant density have been observed independently by Baldwin and Shooter in their studies of 5BU[overbar]-substituted DNA's in alkaline solutions.


Item Type:Article
Related URLs:
URLURL TypeDescription
http://dx.doi.org/10.1073/pnas.49.1.12DOIUNSPECIFIED
http://www.pnas.org/content/49/1/12PublisherUNSPECIFIED
Additional Information:© 1963 National Academy of Sciences. Communicated December 3, 1962. We are indebted to Dr. G. D. Guthrie who performed the infectivity assays for ϕX-174 DNA. Supported by U.S.P.H.S. Grants No. HE-03394 and AM-03907. Contribution No. 2911 from the Gates, Crellin, and Church Laboratories.
Funders:
Funding AgencyGrant Number
U. S. Public Health ServiceHE-03394
U. S. Public Health ServiceAM-03907
Record Number:CaltechAUTHORS:20120816-144654347
Persistent URL:http://resolver.caltech.edu/CaltechAUTHORS:20120816-144654347
Usage Policy:No commercial reproduction, distribution, display or performance rights in this work are provided.
ID Code:33278
Collection:CaltechAUTHORS
Deposited By: Jason Perez
Deposited On:16 Aug 2012 22:04
Last Modified:14 Nov 2014 19:21

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