Orr, Sally R. and Hughes, Tim P. and Sawyers, Charles L. and Kato, Roberta M. and Quan, Shirley G. and Williams, Suzanne P. and Witte, Owen N. and Hood, Leroy (1994) Isolation of Unknown Genes from Human Bone Marrow by Differental Screening and Single-Pass cDNA Sequences Determination. Proceedings of the National Academy of Sciences of the United States of America, 91 (25). pp. 11869-11873. ISSN 0027-8424 http://resolver.caltech.edu/CaltechAUTHORS:ORRpnas94
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A cDNA sequencing project was initiated to characterize gene expression in human bone marrow and develop strategies to isolate novel genes. Forty-eight random cDNAs from total human bone marrow were subjected to single-pass DNA sequence analysis to determine a limited complexity of mRNAs expressed in the bone marrow. Overall, 8 cDNAs (17%) showed no similarity to known sequences. Information from DNA sequence analysis was used to develop a differential prescreen to subtract unwanted cDNAs and to enrich for unknown cDNAs. Forty-eight cDNAs that were negative with a complex probe were subject to single-pass DNA sequence determination. Of these prescreened cDNAs, the number of unknown sequences increased to 23 (48%). Unknown cDNAs were also characterized by RNA expression analysis using 25 different human leukemic cell lines. Of 13 unknown cDNAs tested, 10 were expressed in all cell types tested and 3 revealed a hematopoietic lineage-restricted expression pattern. Interestingly, while a total of only 96 bone marrow cDNAs were sequenced, 31 of these cDNAs represent sequences from unknown genes and 12 showed significant similarities to sequences in the data bases. One cDNA revealed a significant similarity to a serine/threonine-protein kinase at the amino acid level (56% identity for 123 amino acids) and may represent a previously unknown kinase. Differential screening techniques coupled with single-pass cDNA sequence analysis may prove to be a powerful and simple technique to examine developmental gene expression.
|Additional Information:||Copyright © 1994 by the National Academy of Sciences Contributed by Leroy Hood, August 5, 1994 We gratefully acknowledge Mike Fogliano for assistance with the computer analysis. This work was supported by the Lucille P. Markey Charitable Trust (S.L.O.), the Cancer Research Institute, and the Jaye Haddad-Concern Foundation Fellowship (T.P.H.). C.L.S. is a Howard Hughes Medical Institute Research Fellow and O.N.W. is an Investigator of the Howard Hughes Medical Institute. Portions of this work were funded by grants to O.N.W. from the National Cancer Institute. The publication costs of this article were defrayed in part by page charge payment. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. §1734 solely to indicate this fact.|
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|Deposited On:||04 Oct 2006|
|Last Modified:||26 Dec 2012 09:04|
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