Molecular Evolution Activities

   
Molecular Evolution Bibliographies
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M. Bulmer, K. H. Wolfe and P. M. Sharp, "Synonymous Nucleotide Substitution Rates in Mammalian Genes - Implications for the Molecular Clock and the Relationship of Mammalian Orders," Proceedings of the National Academy of Sciences of the United States of America, 88 (1991), 5974-5978.
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A. Llopart and M. Aguade, "Synonymous rates at the RpII215 gene of Drosophila: variation among species and across the coding region," Genetics, 152 (1999), 269-80.
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M. Salemi, J. Desmyter and A. M. Vandamme, "Tempo and mode of human and simian T-lymphotropic virus (HTLV/STLV) evolution revealed by analyses of full-genome sequences," Molecular Biology & Evolution, 17 (2000), 374-86.
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R. C. Lewontin and J. Krakauer, "Testing Heterogeneity of F-Values," Genetics, 80 (1975), 397-398.
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R. W. Gauldie, "Testing neutral theorists: Revisiting heterozygosities at the phosphoglucomutase locus and glucose phosphate isomerase locus," Comparative Biochemistry and Physiology B-Biochemistry & Molecular Biology, 115 (1996), 47-56.
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F. Tajima, K. Misawa and H. Innan, "The amount and pattern of DNA polymorphism under the neutral mutation hypothesis," Genetica, 103 (1998), 103-107.
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E. Zuckerkandl, "The appearance of new structures and functions in proteins during evolution," Journal of Molecular Evolution, 7 (1975), 1-57.
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E. Zuckerkandl, "The cell machinery in its relation to biogenesis," Revue Europeenne d Etudes Cliniques et Biologiques, 15 (1970), 369-74.
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M. Goodman, "The chronicle of primate phylogeny contained in proteins," Symp. Zool. Soc. London, 33 (1973), 339-375.
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T. Ohta and G. A. Dover, "The Cohesive Population-Genetics of Molecular Drive," Genetics, 108 (1984), 501-521.
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T. Ohta, "The current significance and standing of neutral and nearly neutral theories," Bioessays, 18 (1996), 673-677.
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T. Ohta, "The current significance and standing of neutral and neutral theories," Bioessays, 18 (1996), 673-7; discussion 683.
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R. C. Lewontin, "The Detection of Linkage Disequilibrium in Molecular Sequence Data," Genetics, 140 (1995), 377-388.
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N. G. C. Smith and L. D. Hurst, "The effect of tandem substitutions on the correlation between synonymous and nonsynonymous rates in rodents," Genetics, 153 (1999), 1395-1402.
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N. G. Smith and L. D. Hurst, "The effect of tandem substitutions on the correlation between synonymous and nonsynonymous rates in rodents," Genetics, 153 (1999), 1395-402.
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G. A. Hoelzer, J. Wallman and D. J. Melnick, "The effects of social structure, geographical structure, and population size on the evolution of mitochondrial DNA: II. Molecular clocks and the lineage sorting period," Journal of Molecular Evolution, 47 (1998), 21-31.
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England?) Royal Society (Great Britain). Discussion Meeting London et al., The evolution of DNA sequences: a discussion (London: Royal Society, 1986).
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T. Burmester et al., "The evolution of hexamerins and the phylogeny of insects," Journal of Molecular Evolution, 47 (1998), 93-108.
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E. Suarez and A. Barahona, "The experimental roots of the neutral theory of molecular evolution," History and Philosophy of the Life Sciences, 18 (1996), 55-81.
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H. S. Koh, W. J. Lee and T. D. Kocher, "The genetic relationships of two subspecies of striped field mice, Apodemus agrarius coreae and Apodemus agrarius chejuensis," Heredity, 85 (2000), 30-6.
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S. L. Turner and J. P. Young, "The glutamine synthetases of rhizobia: phylogenetics and evolutionary implications," Molecular Biology & Evolution, 17 (2000), 309-19.
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A. Muto and S. Osawa, "The guanine and cytosine content of genomic DNA and bacterial evolution," Proceedings of the National Academy of Sciences of the United States of America, 84 (1987), 166-9.
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R. B. Meagher, "The Impact of Historical Contingency on Gene Phylogeny - Plant Actin Diversity," in ed., Evolutionary Biology, Vol 28 (: , 1995), 195-215.
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J. P. Sallei and E. Zuckerkandl, "The in vitro cellular synthesis of hemoglobin components in various media and its relevance to the concept of stenogenic and eurygenic states of differentiation," Biochimie, 57 (1975), 343-52.
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J. P. Sallei and E. Zuckerkandl, "The in vitro synthesis of fetal hemoglobin in erythroid cells from human adults," Biochimie, 56 (1974), 547-53.
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E. Zuckerkandl, "The journal and its field: a case of co-evolution," Journal of Molecular Evolution, 47 (1998), 236-7.
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M. D. Purugganan, "The MADS-box floral homeotic gene lineages predate the origin of seed plants: phylogenetic and molecular clock estimates," Journal of Molecular Evolution, 45 (1997), 392-6.
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H. G. Spencer and R. W. Marks, "The Maintenance of Single-Locus Polymorphism .4. Models with Mutation from Existing Alleles," Genetics, 130 (1992), 211-221.
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H. G. Spencer and R. W. Marks, "The maintenance of single-locus polymorphism. IV. Models with mutation from existing alleles," Genetics, 130 (1992), 211-21.
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J. Klein, "The major histocompatibility complex and the neutral theory: The exception that proves the rule?," Journal of Genetics, 75 (1996), 117-124.
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Brian Koh, The male-driven model of molecular evolution: a test using the glucose-6-phosphate dehydrogenase and zinc finger protein loci (: Thesis (B.A.)--Harvard University, 1996, 1996).
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Simon Easteal, Chris Collet and David Betty, The mammalian molecular clock (Austin: R.G. Landes, 1995).
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T. Ohta, "The Meaning of Natural-Selection Revisited at the Molecular- Level," Trends in Ecology & Evolution, 7 (1992), 311-312.
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T. Ohta, "The meaning of near-neutrality at coding and non-coding regions," Gene, 205 (1997), 261-267.
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G.G. Simpson, "The meaning of taxonomic statements," in S.L. Washburn, ed., Classification and Human Evolution (Chicago: Aldine, 1963), 1-31.
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V. V. Sukhodolets, "The Mechanism of Vertical Evolution and the Theory of Neutrality," Genetika, 27 (1991), 1685-1696.
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B. Mantovani, M. Passamonti and V. Scali, "The mitochondrial cytochrome oxidase II gene in Bacillus stick insects: ancestry of hybrids, androgenesis, and phylogenetic relationships," Molecular Phylogenetics & Evolution, 19 (2001), 157-63.
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Daniel Michael Weinreich, The molecular clock and the evolution of OXPHOS enzymes in mammals (: Thesis (Ph. D.)--Department of Organismic and Evolutionary Biology, Harvard University, 1998, 1998).
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L. Chao and D. E. Carr, "The Molecular Clock and the Relationship between Population- Size and Generation Time," Evolution, 47 (1993), 688-690.
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T. Leitner and J. Albert, "The molecular clock of HIV-1 unveiled through analysis of a known transmission history," Proceedings of the National Academy of Sciences of the United States of America, 96 (1999), 10752-7.
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L. W. Zeng et al., "The molecular clock revisited: the rate of synonymous vs. replacement change in Drosophila," Genetica, 103 (1998), 369-382.
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P. E. Gibbs, W. F. Witke and A. Dugaiczyk, "The molecular clock runs at different rates among closely related members of a gene family," Journal of Molecular Evolution, 46 (1998), 552-61.
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W.H. Li and M Tanimura, "The molecular clock runs more slowly in man than in apes and monkeys," Nature, 326 (1987), 93-96.
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M.D Jacobs and Cambridge Univ. (GB), The molecular evolution of the alcohol dehydrogenase gene in the Drosophila melanogaster species group (: Thesis (Ph.D.), 1994).
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T. Ohta, "The Mutational Load of a Multigene Family with Uniform Members," Genetical Research, 53 (1989), 141-145.
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T. Ohta, "The Nearly Neutral Theory of Molecular Evolution," Annual Review of Ecology and Systematics, 23 (1992), 263-286.
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J. H. Gillespie, "The neutral theory in an infinite population," Gene, 261 (2000), 11-18.
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M. Kreitman, "The neutral theory is dead. Long live the neutral theory," Bioessays, 18 (1996), 678-683.
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T. Ohta, "The neutral theory is dead. Long live the neutral theory - Reply," Bioessays, 18 (1996), 683-683.
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M. Kreitman, "The neutral theory is dead. Long live the neutral theory - Reply," Bioessays, 18 (1996), 683-683.
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