CaltechAUTHORS
  A Caltech Library Service

SCRATCH: a protein structure and structural feature prediction server

Cheng, J. and Randall, A. Z. and Sweredoski, M. J. and Baldi, P. (2005) SCRATCH: a protein structure and structural feature prediction server. Nucleic Acids Research, 33 (S2). W72-W76. ISSN 0305-1048. PMCID PMC1160157. doi:10.1093/nar/gki396. https://resolver.caltech.edu/CaltechAUTHORS:20200506-085432552

[img] PDF - Published Version
Creative Commons Attribution.

286kB

Use this Persistent URL to link to this item: https://resolver.caltech.edu/CaltechAUTHORS:20200506-085432552

Abstract

SCRATCH is a server for predicting protein tertiary structure and structural features. The SCRATCH software suite includes predictors for secondary structure, relative solvent accessibility, disordered regions, domains, disulfide bridges, single mutation stability, residue contacts versus average, individual residue contacts and tertiary structure. The user simply provides an amino acid sequence and selects the desired predictions, then submits to the server. Results are emailed to the user. The server is available at http://www.igb.uci.edu/servers/psss.html .


Item Type:Article
Related URLs:
URLURL TypeDescription
https://doi.org/10.1093/nar/gki396DOIArticle
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160157PubMed CentralArticle
ORCID:
AuthorORCID
Sweredoski, M. J.0000-0003-0878-3831
Additional Information:© The Author 2005. Published by Oxford University Press. All rights reserved
. The online version of this article has been published under an open access model. Users are entitled to use, reproduce, disseminate, or display the open access version of this article for non-commercial purposes provided that: the original authorship is properly and fully attributed; the Journal and Oxford University Press are attributed as the original place of publication with the correct citation details given; if an article is subsequently reproduced or disseminated not in its entirety but only in part or as a derivative work this must be clearly indicated. Received: 13 February 2005; Revision received: 14 March 2005; Accepted: 14 March 2005; Published: 01 July 2005. Work supported by a Laurel Wilkening Faculty Innovation award, an NIH Biomedical Informatics Training grant (LM-07443-01), an NSF MRI grant (EIA-0321390), a Sun Microsystems award, a grant from the University of California Systemwide Biotechnology Research and Education Program, and by the Institute for Genomics and Bioinformatics at UCI. Funding to pay the Open Access publication charges for this article was provided by NIH Biomedical Informatics Training grant (LM-07443-01). Conflict of interest statement . None declared.
Funders:
Funding AgencyGrant Number
Laurel Wilkening Faculty Innovation AwardUNSPECIFIED
NIHLM-07443-01
NSFEIA-0321390
Sun Microsystems, Inc.UNSPECIFIED
University of California, IrvineUNSPECIFIED
Issue or Number:S2
PubMed Central ID:PMC1160157
DOI:10.1093/nar/gki396
Record Number:CaltechAUTHORS:20200506-085432552
Persistent URL:https://resolver.caltech.edu/CaltechAUTHORS:20200506-085432552
Official Citation:J. Cheng, A. Z. Randall, M. J. Sweredoski, P. Baldi, SCRATCH: a protein structure and structural feature prediction server, Nucleic Acids Research, Volume 33, Issue suppl_2, 1 July 2005, Pages W72–W76, https://doi.org/10.1093/nar/gki396
Usage Policy:No commercial reproduction, distribution, display or performance rights in this work are provided.
ID Code:103022
Collection:CaltechAUTHORS
Deposited By: Tony Diaz
Deposited On:06 May 2020 15:59
Last Modified:16 Nov 2021 18:17

Repository Staff Only: item control page