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Coding for Optimized Writing Rate in DNA Storage

Jain, Siddharth and Farnoud, Farzad and Schwartz, Moshe and Bruck, Jehoshua (2020) Coding for Optimized Writing Rate in DNA Storage. In: 2020 IEEE International Symposium on Information Theory (ISIT). , Piscataway, NJ, pp. 711-716. ISBN 978-1-7281-6432-8. https://resolver.caltech.edu/CaltechAUTHORS:20200511-090541146

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Abstract

A method for encoding information in DNA sequences is described. The method is based on the precisionresolution framework, and is aimed to work in conjunction with a recently suggested terminator-free template independent DNA synthesis method. The suggested method optimizes the amount of information bits per synthesis time unit, namely, the writing rate. Additionally, the encoding scheme studied here takes into account the existence of multiple copies of the DNA sequence, which are independently distorted. Finally, quantizers for various run-length distributions are designed.


Item Type:Book Section
Related URLs:
URLURL TypeDescription
https://doi.org/10.1109/ISIT44484.2020.9174253DOIArticle
https://arxiv.org/abs/2005.03248arXivDiscussion Paper
https://resolver.caltech.edu/CaltechAUTHORS:20200511-120246633Related ItemTechnical Report
ORCID:
AuthorORCID
Jain, Siddharth0000-0002-9164-6119
Farnoud, Farzad0000-0002-8684-4487
Schwartz, Moshe0000-0002-1449-0026
Bruck, Jehoshua0000-0001-8474-0812
Additional Information:© 2020 IEEE. This work was supported in part by a United States–Israel Binational Science Foundation (BSF) under grant no. 2017652, and by NSF grants under grant nos. CCF-1816409, CCF-1755773, CCF-1816965, and CCF-1717884.
Funders:
Funding AgencyGrant Number
Binational Science Foundation (USA-Israel)2017652
NSFCCF-1816409
NSFCCF-1755773
NSFCCF-1816965
NSFCCF-1717884
Record Number:CaltechAUTHORS:20200511-090541146
Persistent URL:https://resolver.caltech.edu/CaltechAUTHORS:20200511-090541146
Official Citation:S. Jain, F. Farnoud, M. Schwartz and J. Bruck, "Coding for Optimized Writing Rate in DNA Storage," 2020 IEEE International Symposium on Information Theory (ISIT), Los Angeles, CA, USA, 2020, pp. 711-716, doi: 10.1109/ISIT44484.2020.9174253
Usage Policy:No commercial reproduction, distribution, display or performance rights in this work are provided.
ID Code:103092
Collection:CaltechAUTHORS
Deposited By: Tony Diaz
Deposited On:11 May 2020 21:08
Last Modified:28 Aug 2020 18:13

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