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Coding for Optimized Writing Rate in DNA Storage

Jain, Siddharth and Farnoud, Farzad and Schwartz, Moshe and Bruck, Jehoshua (2020) Coding for Optimized Writing Rate in DNA Storage. Parallel and Distributed Systems Group Technical Reports, etr148. California Institute of Technology , Pasadena, CA. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20200511-120246633

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Abstract

A method for encoding information in DNA sequences is described. The method is based on the precision-resolution framework, and is aimed to work in conjunction with a recently suggested terminator-free template independent DNA synthesis method. The suggested method optimizes the amount of information bits per synthesis time unit, namely, the writing rate. Additionally, the encoding scheme studied here takes into account the existence of multiple copies of the DNA sequence, which are independently distorted. Finally, quantizers for various run-length distributions are designed.


Item Type:Report or Paper (Technical Report)
Related URLs:
URLURL TypeDescription
https://resolver.caltech.edu/CaltechAUTHORS:20200511-090541146Related ItemConference Paper
ORCID:
AuthorORCID
Jain, Siddharth0000-0002-9164-6119
Farnoud, Farzad0000-0002-8684-4487
Schwartz, Moshe0000-0002-1449-0026
Bruck, Jehoshua0000-0001-8474-0812
Additional Information:This work was supported in part by a United States–Israel Binational Science Foundation (BSF) under grant no. 2017652, and by NSF grants under grant nos. CCF-1816409, CCF-1755773, CCF-1816965, and CCF-1717884.
Group:Parallel and Distributed Systems Group
Funders:
Funding AgencyGrant Number
Binational Science Foundation (USA-Israel)2017652
NSFCCF-1816409
NSFCCF-1755773
NSFCCF-1816965
NSFCCF-1717884
Series Name:Parallel and Distributed Systems Group Technical Reports
Issue or Number:etr148
Record Number:CaltechAUTHORS:20200511-120246633
Persistent URL:https://resolver.caltech.edu/CaltechAUTHORS:20200511-120246633
Usage Policy:No commercial reproduction, distribution, display or performance rights in this work are provided.
ID Code:103102
Collection:CaltechPARADISE
Deposited By: Tony Diaz
Deposited On:11 May 2020 20:09
Last Modified:28 Aug 2020 17:46

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