Coding for Optimized Writing Rate in DNA Storage

Jain, Siddharth and Farnoud (Hassanzadeh), Farzad and Schwartz, Moshe and Bruck, Jehoshua (2020) Coding for Optimized Writing Rate in DNA Storage. Parallel and Distributed Systems Group Technical Reports, etr148. California Institute of Technology , Pasadena, CA. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20200511-120246633

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Abstract

A method for encoding information in DNA sequences is described. The method is based on the precision-resolution framework, and is aimed to work in conjunction with a recently suggested terminator-free template independent DNA synthesis method. The suggested method optimizes the amount of information bits per synthesis time unit, namely, the writing rate. Additionally, the encoding scheme studied here takes into account the existence of multiple copies of the DNA sequence, which are independently distorted. Finally, quantizers for various run-length distributions are designed.

Item Type:

Report or Paper (Technical Report)

Related URLs:

URL	URL Type	Description
https://resolver.caltech.edu/CaltechAUTHORS:20200511-090541146	Related Item	Conference Paper

ORCID:

Author	ORCID
Jain, Siddharth	0000-0002-9164-6119
Farnoud (Hassanzadeh), Farzad	0000-0002-8684-4487
Schwartz, Moshe	0000-0002-1449-0026
Bruck, Jehoshua	0000-0001-8474-0812

Additional Information:

This work was supported in part by a United States–Israel Binational Science Foundation (BSF) under grant no. 2017652, and by NSF grants under grant nos. CCF-1816409, CCF-1755773, CCF-1816965, and CCF-1717884.

Group:

Parallel and Distributed Systems Group

Funders:

Funding Agency	Grant Number
Binational Science Foundation (USA-Israel)	2017652
NSF	CCF-1816409
NSF	CCF-1755773
NSF	CCF-1816965
NSF	CCF-1717884

Series Name:

Parallel and Distributed Systems Group Technical Reports

Issue or Number:

etr148

Record Number:

CaltechAUTHORS:20200511-120246633

Persistent URL:

https://resolver.caltech.edu/CaltechAUTHORS:20200511-120246633

Usage Policy:

No commercial reproduction, distribution, display or performance rights in this work are provided.

ID Code:

103102

Collection:

CaltechPARADISE

Deposited By:

Tony Diaz

Deposited On:

11 May 2020 20:09

Last Modified:

24 Jun 2021 21:56

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