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The ATF3 Transcription Factor Is a Short-Lived Substrate of the Arg/N-Degron Pathway

Vu, Tri T. M. and Varshavsky, Alexander (2020) The ATF3 Transcription Factor Is a Short-Lived Substrate of the Arg/N-Degron Pathway. Biochemistry, 59 (30). pp. 2796-2812. ISSN 0006-2960. PMCID PMC7669821. https://resolver.caltech.edu/CaltechAUTHORS:20200721-100007126

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Abstract

The Arg/N-degron pathway targets proteins for degradation by recognizing their specific N-terminal residues or, alternatively, their non-N-terminal degrons. In mammals, this pathway is mediated by the UBR1, UBR2, UBR4, and UBR5 E3 ubiquitin ligases, and by the p62 regulator of autophagy. UBR1 and UBR2 are sequelogous, functionally overlapping, and dominate the targeting of Arg/N-degron substrates in examined cell lines. We constructed, here, mouse strains in which the double mutant [UBR1^(–/–)UBR2^(–/–)] genotype can be induced conditionally, in adult mice. We also constructed human [UBR1^(–/–)UBR2^(–/–)] HEK293T cell lines that unconditionally lack UBR1/UBR2. ATF3 is a basic leucine zipper transcription factor that regulates hundreds of genes and can act as either a repressor or an activator of transcription. Using the above double-mutant mice and human cells, we found that the levels of endogenous, untagged ATF3 were significantly higher in both of these [UBR1^(–/–)UBR2^(–/–)] settings than in wild-type cells. We also show, through chase-degradation assays with [UBR1^(–/–)UBR2^(–/–)] and wild-type human cells, that the Arg/N-degron pathway mediates a large fraction of ATF3 degradation. Furthermore, we used split-ubiquitin and another protein interaction assay to detect the binding of ATF3 to both UBR1 and UBR2, in agreement with the UBR1/UBR2-mediated degradation of endogenous ATF3. Full-length 24 kDa ATF3 binds to ∼100 kDa fragments of 200 kDa UBR1 and UBR2 but does not bind (in the setting of interaction assays) to full-length UBR1/UBR2. These and other binding patterns, whose mechanics remain to be understood, may signify a conditional (regulated) degradation of ATF3 by the Arg/N-degron pathway.


Item Type:Article
Related URLs:
URLURL TypeDescription
https://doi.org/10.1021/acs.biochem.0c00514DOIArticle
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7669821PubMed CentralArticle
ORCID:
AuthorORCID
Vu, Tri T. M.0000-0002-1098-5646
Varshavsky, Alexander0000-0002-4011-258X
Additional Information:© 2020 American Chemical Society. Received: June 18, 2020; Revised: July 14, 2020; Published: July 21, 2020. The authors are grateful to J. Sheng, a former member of the Varshavsky laboratory, for contributing to an early stage of this project. The authors also thank the former and current lab members for their advice and assistance throughout this study. Author Contributions: T.T.M.V. and A.V. designed the experiments. T.T.M.V. performed the experiments. T.T.M.V. and A.V. wrote the paper. The authors discussed the results and commented on the manuscript. This work was supported by National Institutes of Health Grants R01DK039520 and R01GM031530 (A.V.). The authors declare no competing financial interest.
Funders:
Funding AgencyGrant Number
NIHR01DK039520
NIHR01GM031530
Issue or Number:30
PubMed Central ID:PMC7669821
Record Number:CaltechAUTHORS:20200721-100007126
Persistent URL:https://resolver.caltech.edu/CaltechAUTHORS:20200721-100007126
Official Citation:The ATF3 Transcription Factor Is a Short-Lived Substrate of the Arg/N-Degron Pathway. Tri T. M. Vu and Alexander Varshavsky. Biochemistry 2020 59 (30), 2796-2812; DOI: 10.1021/acs.biochem.0c00514
Usage Policy:No commercial reproduction, distribution, display or performance rights in this work are provided.
ID Code:104473
Collection:CaltechAUTHORS
Deposited By: Tony Diaz
Deposited On:21 Jul 2020 17:10
Last Modified:24 Nov 2020 20:40

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