Dobreva, Tatyana and Brown, David and Park, Jong Hwee and Thomson, Matt (2020) Enabling out-of-clinic human immunity studies via single-cell profiling of capillary blood. . (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20200727-093309639
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Abstract
An individual's immune system is driven by both genetic and environmental factors that vary over time. To better understand the temporal and inter-individual variability of gene expression within distinct immune cell types, we developed a platform that leverages multiplexed single-cell sequencing and out-of-clinic capillary blood extraction to enable simplified, cost-effective profiling of the human immune system across people and time at single-cell resolution. Using the platform, we detect widespread differences in cell type-specific gene expression between subjects that are stable over multiple days.
Item Type: | Report or Paper (Discussion Paper) | |||||||||||||||
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Additional Information: | The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license. Posted July 26, 2020. The authors have declared no competing interest. Data Availability: Gene expression matrix and relevant metadata are available on https://data.caltech.edu/records/1407. Genome and FASTQ files are not being released to protect the identity of the subjects. Code Availability: Custom code made for diurnal and subject specific gene detection is available on https://github.com/thomsonlab/capblood-seq. | |||||||||||||||
DOI: | 10.1101/2020.07.25.210468 | |||||||||||||||
Record Number: | CaltechAUTHORS:20200727-093309639 | |||||||||||||||
Persistent URL: | https://resolver.caltech.edu/CaltechAUTHORS:20200727-093309639 | |||||||||||||||
Official Citation: | Enabling out-of-clinic human immunity studies via single-cell profiling of capillary blood. Tatyana Dobreva, David Brown, Jong Hwee Park, Matt Thomson. bioRxiv 2020.07.25.210468; doi: https://doi.org/10.1101/2020.07.25.210468 | |||||||||||||||
Usage Policy: | No commercial reproduction, distribution, display or performance rights in this work are provided. | |||||||||||||||
ID Code: | 104585 | |||||||||||||||
Collection: | CaltechAUTHORS | |||||||||||||||
Deposited By: | Tony Diaz | |||||||||||||||
Deposited On: | 28 Jul 2020 16:17 | |||||||||||||||
Last Modified: | 16 Nov 2021 18:33 |
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