Dunham, Noah P. and Arnold, Frances H. (2020) Nature’s Machinery, Repurposed: Expanding the Repertoire of Iron-Dependent Oxygenases. ACS Catalysis, 10 (20). pp. 12239-12255. ISSN 2155-5435. PMCID PMC7710332. doi:10.1021/acscatal.0c03606. https://resolver.caltech.edu/CaltechAUTHORS:20200929-124227563
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Abstract
Iron is an especially important redox-active cofactor in biology because of its ability to mediate reactions with atmospheric O₂. Iron-dependent oxygenases exploit this earth-abundant transition metal for the insertion of oxygen atoms into organic compounds. Throughout the astounding diversity of transformations catalyzed by these enzymes, the protein framework directs reactive intermediates toward the precise formation of products, which, in many cases, necessitates the cleavage of strong C–H bonds. In recent years, members of several iron-dependent oxygenase families have been engineered for new-to-nature transformations that offer advantages over conventional synthetic methods. In this Perspective, we first explore what is known about the reactivity of heme-dependent cytochrome P450 oxygenases and nonheme iron-dependent oxygenases bearing the 2-His-1-carboxylate facial triad by reviewing mechanistic studies with an emphasis on how the protein scaffold maximizes the catalytic potential of the iron-heme and iron cofactors. We then review how these cofactors have been repurposed for abiological transformations by engineering the protein frameworks of these enzymes. Finally, we discuss contemporary challenges associated with engineering these platforms and comment on their roles in biocatalysis moving forward.
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Additional Information: | © 2020 American Chemical Society. Received: August 17, 2020; Revised: September 26, 2020; Published: September 28, 2020. This work was supported by the US Army Research Office Institute for Collaborative Biotechnologies contract W911NF-19-D-0001 and the Joseph J. Jacobs Institute for Molecular Engineering for Medicine. N.P.D. was supported by the Ruth L. Kirschstein NIH Postdoctoral Fellowship (F32GM131620). We thank Professor Haoming Zhang for providing the open- and closed-state coordinates resulting from the full-length P450_(BM3) cryo-EM structures. We also thank Dr. S. V. Athavale, Dr. D. C. Miller, and Dr. Z. Liu for providing helpful comments on the manuscript. The authors declare no competing financial interest. | |||||||||
Group: | Jacobs Institute for Molecular Engineering for Medicine | |||||||||
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Subject Keywords: | biocatalysis, enzymology, directed evolution, mechanism, oxygenase, cytochrome P450 | |||||||||
Issue or Number: | 20 | |||||||||
PubMed Central ID: | PMC7710332 | |||||||||
DOI: | 10.1021/acscatal.0c03606 | |||||||||
Record Number: | CaltechAUTHORS:20200929-124227563 | |||||||||
Persistent URL: | https://resolver.caltech.edu/CaltechAUTHORS:20200929-124227563 | |||||||||
Official Citation: | Nature’s Machinery, Repurposed: Expanding the Repertoire of Iron-Dependent Oxygenases. Noah P. Dunham and Frances H. Arnold. ACS Catalysis 2020 10 (20), 12239-12255; DOI: 10.1021/acscatal.0c03606 | |||||||||
Usage Policy: | No commercial reproduction, distribution, display or performance rights in this work are provided. | |||||||||
ID Code: | 105637 | |||||||||
Collection: | CaltechAUTHORS | |||||||||
Deposited By: | Tony Diaz | |||||||||
Deposited On: | 29 Sep 2020 20:11 | |||||||||
Last Modified: | 12 Feb 2022 00:26 |
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