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Telomere-to-Telomere Genome Assembly of Bursaphelenchus okinawaensis Strain SH1

Sun, Simo and Shinya, Ryoji and Dayi, Mehmet and Yoshida, Akemi and Sternberg, Paul W. and Kikuchi, Taisei (2020) Telomere-to-Telomere Genome Assembly of Bursaphelenchus okinawaensis Strain SH1. Microbiology Resource Announcements, 9 (43). Art. No. e01000-20. ISSN 2576-098X. https://resolver.caltech.edu/CaltechAUTHORS:20201022-112712963

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Abstract

Bursaphelenchus okinawaensis is a self-fertilizing, hermaphroditic, fungus-feeding nematode used as a laboratory model for the genus Bursaphelenchus, which includes the important pathogen Bursaphelenchus xylophilus. Here, we report the nearly complete genome sequence of B. okinawaensis. The 70-Mbp assembly contained six scaffolds (>11 Mbp each) with telomere repeats on their ends, indicating complete chromosomes.


Item Type:Article
Related URLs:
URLURL TypeDescription
https://doi.org/10.1128/mra.01000-20DOIArticle
ORCID:
AuthorORCID
Shinya, Ryoji0000-0002-2450-3054
Dayi, Mehmet0000-0002-5367-918X
Sternberg, Paul W.0000-0002-7699-0173
Kikuchi, Taisei0000-0003-2759-9167
Additional Information:© 2020 Sun et al. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license. Received 7 September 2020. Accepted 25 September 2020. Published 22 October 2020. We thank Asuka Konosu, Melis Konno, Ryusei Tanaka, Igor Antoschechkin, and the Jacobs Genome Facility for their technical assistance. This work was funded in part by Japan Society for the Promotion of Science (JSPS) KAKENHI grant numbers 26460510 and 19H03212 and JST CREST grant number JPMJCR18S7. Data availability: The B. okinawaensis v2 assembly has been deposited in DDBJ/EMBL/GenBank under BioProject number PRJEB40023. The raw Illumina, Nanopore, and Hi-C read data are available in the Sequence Read Archive with accession numbers DRR243691, DRR243689, and DRR243690, respectively.
Group:Millard and Muriel Jacobs Genetics and Genomics Laboratory
Funders:
Funding AgencyGrant Number
Japan Society for the Promotion of Science (JSPS)26460510
Japan Society for the Promotion of Science (JSPS)19H03212
Japan Science and Technology AgencyJPMJCR18S7
Issue or Number:43
Record Number:CaltechAUTHORS:20201022-112712963
Persistent URL:https://resolver.caltech.edu/CaltechAUTHORS:20201022-112712963
Official Citation:Telomere-to-Telomere Genome Assembly of Bursaphelenchus okinawaensis Strain SH1. Simo Sun, Ryoji Shinya, Mehmet Dayi, Akemi Yoshida, Paul W. Sternberg, Taisei Kikuchi Microbiology Resource Announcements Oct 2020, 9 (43) e01000-20; DOI: 10.1128/MRA.01000-20
Usage Policy:No commercial reproduction, distribution, display or performance rights in this work are provided.
ID Code:106226
Collection:CaltechAUTHORS
Deposited By: George Porter
Deposited On:22 Oct 2020 20:29
Last Modified:22 Oct 2020 20:29

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