#Supplementary Data 3. List of SARS-CoV-2 genomes used in mapping Fig. 4
StrainName,GISAID_ID,DATE_COLLECTED,NEW_PANGOLIN_LINEAGE,PHL_PRL,S:E484K
NY-PRL-2020_1229_00G05,EPI_ISL_984771,12/26/20,B.1.526,PRL,+
NY-PRL-2020_1229_00C05,EPI_ISL_984772,12/26/20,B.1.526,PRL,-
NY-PRL-2020_1229_01G01,EPI_ISL_984773,12/26/20,B.1.526,PRL,-
NY-PRL-2020_1229_01H03,EPI_ISL_984816,12/27/20,B.1.526,PRL,-
NY-PRL-2020_1229_01H04,EPI_ISL_984817,12/27/20,B.1.526,PRL,-
NY-NYCPHL-002190,EPI_ISL_857060,1/3/21,B.1.526.2,PHL,-
NY-NYCPHL-002295,EPI_ISL_857120,1/7/21,B.1.526,PHL,-
NY-NYCPHL-002336,EPI_ISL_857163,1/11/21,B.1.526,PHL,+
NY-NYCPHL-002365,EPI_ISL_857164,1/11/21,B.1.526,PHL,+
NY-PRL-2021_0125_00A06,EPI_ISL_984870,1/13/21,B.1.526,PRL,+
NY-PRL-2021_0125_00A08,EPI_ISL_984871,1/13/21,B.1.526,PRL,+
NY-NYCPHL-002433,EPI_ISL_883338,1/14/21,B.1.526,PHL,+
NY-NYCPHL-002440,EPI_ISL_883339,1/14/21,B.1.526,PHL,-
NY-NYCPHL-002466,EPI_ISL_883340,1/14/21,B.1.526,PHL,+
NY-NYCPHL-002471,EPI_ISL_883341,1/14/21,B.1.526,PHL,+
NY-NYCPHL-002473,EPI_ISL_883342,1/14/21,B.1.526,PHL,+
NY-NYCPHL-002474,EPI_ISL_883343,1/14/21,B.1.526,PHL,+
NY-NYCPHL-002525,EPI_ISL_883346,1/14/21,B.1.526,PHL,-
NY-NYCPHL-002514,EPI_ISL_883330,1/15/21,B.1.526.2,PHL,-
NY-NYCPHL-002535,EPI_ISL_883331,1/15/21,B.1.526,PHL,-
NY-NYCPHL-002533,EPI_ISL_883347,1/15/21,B.1.526,PHL,-
NY-NYCPHL-002520,EPI_ISL_883344,1/16/21,B.1.526,PHL,-
NY-NYCPHL-002521,EPI_ISL_883345,1/17/21,B.1.526,PHL,+
NY-NYCPHL-002680,EPI_ISL_937190,1/17/21,B.1.526,PHL,+
NY-NYCPHL-002681,EPI_ISL_937191,1/18/21,B.1.526,PHL,+
NY-NYCPHL-002548,EPI_ISL_937126,1/19/21,B.1.526,PHL,-
NY-PRL-2021_0125_00H09,EPI_ISL_984893,1/19/21,B.1.526,PRL,+
NY-PRL-2021_0125_00C05,EPI_ISL_984897,1/19/21,B.1.526,PRL,+
NY-PRL-2021_0125_00G10,EPI_ISL_984898,1/19/21,B.1.526,PRL,+
NY-NYCPHL-002682,EPI_ISL_937192,1/20/21,B.1.526,PHL,+
NY-NYCPHL-002659,EPI_ISL_937176,1/21/21,B.1.526,PHL,-
NY-NYCPHL-002698,EPI_ISL_937201,1/22/21,B.1.526,PHL,-
NY-NYCPHL-002711,EPI_ISL_937211,1/22/21,B.1.526,PHL,+
NY-NYCPHL-002714,EPI_ISL_937213,1/22/21,B.1.526.2,PHL,-
NY-NYCPHL-002784,EPI_ISL_937246,1/22/21,B.1.526,PHL,+
NY-NYCPHL-002785,EPI_ISL_937247,1/23/21,B.1.526,PHL,+
NY-NYCPHL-002941,EPI_ISL_966427,1/24/21,B.1.526,PHL,+
NY-NYCPHL-002720,EPI_ISL_937215,1/25/21,B.1.526,PHL,+
NY-NYCPHL-002723,EPI_ISL_937216,1/25/21,B.1.526,PHL,+
NY-NYCPHL-002729,EPI_ISL_937218,1/25/21,B.1.526,PHL,+
NY-NYCPHL-002767,EPI_ISL_937236,1/25/21,B.1.526,PHL,-
NY-NYCPHL-002793,EPI_ISL_937255,1/25/21,B.1.526,PHL,+
NY-NYCPHL-002800,EPI_ISL_966423,1/26/21,B.1.526,PHL,-
NY-NYCPHL-002804,EPI_ISL_966424,1/26/21,B.1.526,PHL,-
NY-NYCPHL-002807,EPI_ISL_966425,1/26/21,B.1.526,PHL,+
NY-NYCPHL-002827,EPI_ISL_966426,1/26/21,B.1.526,PHL,+
NY-NYCPHL-002940,EPI_ISL_966385,1/27/21,B.1.526.2,PHL,-
NY-NYCPHL-002861,EPI_ISL_966421,1/27/21,B.1.526,PHL,+
NY-NYCPHL-002863,EPI_ISL_966422,1/27/21,B.1.526,PHL,+
NY-NYCPHL-002887,EPI_ISL_966387,1/28/21,B.1.526,PHL,-
NY-NYCPHL-002943,EPI_ISL_966401,1/28/21,B.1.526.2,PHL,-
NY-NYCPHL-002883,EPI_ISL_966415,1/28/21,B.1.526,PHL,+
NY-NYCPHL-002950,EPI_ISL_966417,1/28/21,B.1.526,PHL,-
NY-NYCPHL-002958,EPI_ISL_966418,1/28/21,B.1.526,PHL,+
NY-NYCPHL-002973,EPI_ISL_966419,1/28/21,B.1.526,PHL,-
NY-PRL-2021_0202_00H10,EPI_ISL_984909,1/28/21,B.1.526.2,PRL,-
NY-NYCPHL-002902,EPI_ISL_966412,1/29/21,B.1.526,PHL,-
NY-NYCPHL-002911,EPI_ISL_966413,1/29/21,B.1.526,PHL,+
NY-NYCPHL-002919,EPI_ISL_966414,1/29/21,B.1.526,PHL,+
NY-PRL-2021_0202_00E02,EPI_ISL_984913,1/29/21,B.1.526.2,PRL,-
NY-PRL-2021_0202_02A05,EPI_ISL_994803,1/29/21,B.1.526,PRL,-
NY-PRL-2021_0202_02A06,EPI_ISL_994804,1/29/21,B.1.526,PRL,-
NY-PRL-2021_0202_02D02,EPI_ISL_994819,1/29/21,B.1.526,PRL,-
NY-NYCPHL-003076,EPI_ISL_1064832,1/30/21,B.1.526,PHL,+
NY-NYCPHL-002977,EPI_ISL_966400,1/30/21,B.1.526.2,PHL,-
NY-PRL-2021_0201_03C09,EPI_ISL_984927,1/30/21,B.1.526,PRL,-
NY-PRL-2021_0201_03B10,EPI_ISL_984928,1/30/21,B.1.526,PRL,-
NY-PRL-2021_0201_03C05,EPI_ISL_984929,1/30/21,B.1.526,PRL,-
NY-PRL-2021_0202_00C04,EPI_ISL_984930,1/30/21,B.1.526,PRL,+
NY-PRL-2021_0202_02D12,EPI_ISL_994826,1/30/21,B.1.526.2,PRL,-
NY-PRL-2021_0202_02E05,EPI_ISL_994830,1/30/21,B.1.526,PRL,-
NY-PRL-2021_0202_02F04,EPI_ISL_994835,1/30/21,B.1.526,PRL,-
NY-PRL-2021_0202_02H02,EPI_ISL_994838,1/30/21,B.1.526,PRL,-
NY-PRL-2021_0202_02H04,EPI_ISL_994839,1/30/21,B.1.526,PRL,-
NY-PRL-2021_0202_02H06,EPI_ISL_994840,1/30/21,B.1.526,PRL,-
NY-PRL-2021_0202_02H07,EPI_ISL_994841,1/30/21,B.1.526,PRL,-
NY-PRL-2021_0203_01A09,EPI_ISL_994844,1/30/21,B.1.526.2,PRL,-
NY-PRL-2021_0203_01C09,EPI_ISL_994848,1/30/21,B.1.526,PRL,+
NY-PRL-2021_0203_01D12,EPI_ISL_994853,1/30/21,B.1.526,PRL,+
NY-NYCPHL-003075,#N/A,1/31/21,B.1.526,PHL,+
NY-PRL-2021_0201_03B07,EPI_ISL_984943,1/31/21,B.1.526,PRL,-
NY-PRL-2021_0201_03B06,EPI_ISL_984947,1/31/21,B.1.526,PRL,-
NY-PRL-2021_0203_01H08,EPI_ISL_994870,1/31/21,B.1.526.2,PRL,-
NY-NYCPHL-003089,EPI_ISL_1064804,2/2/21,B.1.526.2,PHL,-
NY-NYCPHL-003090,EPI_ISL_1064833,2/2/21,B.1.526,PHL,+
NY-PRL-2021_0205_00B07,EPI_ISL_994872,2/2/21,B.1.526,PRL,+
NY-PRL-2021_0205_00C04,EPI_ISL_994876,2/2/21,B.1.526,PRL,-
NY-PRL-2021_0205_00D10,EPI_ISL_994879,2/2/21,B.1.526,PRL,-
NY-PRL-2021_0205_00F07,EPI_ISL_994883,2/2/21,B.1.526,PRL,+
NY-PRL-2021_0205_00F09,EPI_ISL_994884,2/2/21,B.1.526,PRL,-
NY-PRL-2021_0205_06C11,#N/A,2/3/21,B.1.526,PRL,+
NY-PRL-2021_0205_08G08,#N/A,2/3/21,B.1.526,PRL,+
NY-NYCPHL-002991,EPI_ISL_1017970,2/3/21,B.1.526,PHL,+
NY-NYCPHL-003008,EPI_ISL_1017973,2/3/21,B.1.526.2,PHL,-
NY-NYCPHL-003042,EPI_ISL_1017990,2/3/21,B.1.526,PHL,+
NY-NYCPHL-003192,EPI_ISL_1018033,2/3/21,B.1.526.2,PHL,-
NY-NYCPHL-003193,EPI_ISL_1018034,2/3/21,B.1.526.2,PHL,-
NY-PRL-2021_0205_08B05,EPI_ISL_1041215,2/3/21,B.1.526,PRL,+
NY-PRL-2021_0205_08D12,EPI_ISL_1041222,2/3/21,B.1.526,PRL,+
NY-PRL-2021_0205_08F02,EPI_ISL_1041226,2/3/21,B.1.526,PRL,+
NY-PRL-2021_0205_08F09,EPI_ISL_1041227,2/3/21,B.1.526,PRL,-
NY-PRL-2021_0205_08G06,EPI_ISL_1041228,2/3/21,B.1.526,PRL,+
NY-PRL-2021_0205_00E10,EPI_ISL_994880,2/3/21,B.1.526,PRL,-
NY-PRL-2021_0205_00G05,EPI_ISL_994886,2/3/21,B.1.526,PRL,+
NY-PRL-2021_0205_00H08,EPI_ISL_994890,2/3/21,B.1.526,PRL,-
NY-PRL-2021_0205_03B07,EPI_ISL_994895,2/3/21,B.1.526.2,PRL,-
NY-PRL-2021_0205_03B08,EPI_ISL_994896,2/3/21,B.1.526.2,PRL,-
NY-PRL-2021_0205_03D02,EPI_ISL_994898,2/3/21,B.1.526.2,PRL,-
NY-PRL-2021_0205_03E04,EPI_ISL_994900,2/3/21,B.1.526,PRL,-
NY-PRL-2021_0205_03F10,EPI_ISL_994903,2/3/21,B.1.526,PRL,+
NY-PRL-2021_0205_03G07,EPI_ISL_994906,2/3/21,B.1.526,PRL,+
NY-PRL-2021_0205_06A08,EPI_ISL_994911,2/3/21,B.1.526,PRL,-
NY-PRL-2021_0205_06C08,EPI_ISL_994918,2/3/21,B.1.526,PRL,-
NY-PRL-2021_0205_06G08,EPI_ISL_994929,2/3/21,B.1.526,PRL,+
NY-PRL-2021_0205_06G10,EPI_ISL_994930,2/3/21,B.1.526.2,PRL,-
NY-PRL-2021_0205_06G11,EPI_ISL_994931,2/3/21,B.1.526,PRL,-
NY-NYCPHL-003019,EPI_ISL_1017978,2/4/21,B.1.526.2,PHL,-
NY-NYCPHL-003026,EPI_ISL_1017982,2/4/21,B.1.526,PHL,+
NY-PRL-2021_0205_08E02,EPI_ISL_1041223,2/4/21,B.1.526,PRL,-
NY-NYCPHL-003016,EPI_ISL_1064830,2/4/21,B.1.526,PHL,+
NY-NYCPHL-003194,EPI_ISL_1064843,2/4/21,B.1.526,PHL,+
NY-NYCPHL-003196,EPI_ISL_1064844,2/4/21,B.1.526,PHL,-
NY-NYCPHL-003218,EPI_ISL_1064846,2/4/21,B.1.526,PHL,-
NY-PRL-2021_0205_06G03,EPI_ISL_994928,2/4/21,B.1.526,PRL,+
NY-PRL-2021_0208_00G02,EPI_ISL_994961,2/4/21,B.1.526,PRL,+
NY-PRL-2021_0208_04A12,EPI_ISL_994975,2/4/21,B.1.526,PRL,+
NY-NYCPHL-003065,EPI_ISL_1064775,2/5/21,B.1.526,PHL,+
NY-NYCPHL-003066,EPI_ISL_1064803,2/5/21,B.1.526.2,PHL,-
NY-NYCPHL-003068,EPI_ISL_1064831,2/5/21,B.1.526,PHL,+
NY-PRL-2021_0208_00A12,EPI_ISL_994943,2/5/21,B.1.526,PRL,+
NY-PRL-2021_0208_00B03,EPI_ISL_994945,2/5/21,B.1.526,PRL,-
NY-PRL-2021_0208_00B04,EPI_ISL_994946,2/5/21,B.1.526,PRL,+
NY-PRL-2021_0208_04A11,EPI_ISL_994974,2/5/21,B.1.526,PRL,+
NY-PRL-2021_0208_04B03,EPI_ISL_994976,2/5/21,B.1.526,PRL,+
NY-PRL-2021_0210_00D11,#N/A,2/6/21,B.1.526,PRL,+
NY-PRL-2021_0210_03G01,#N/A,2/6/21,B.1.526,PRL,+
NY-PRL-2021_0208_05F07,#N/A,2/6/21,B.1.526,PRL,+
NY-PRL-2021_0208_05C01,#N/A,2/6/21,B.1.526.2,PRL,-
NY-NYCPHL-003202,EPI_ISL_1018037,2/6/21,B.1.526.2,PHL,-
NY-PRL-2021_0208_05A08,EPI_ISL_1041353,2/6/21,B.1.526.2,PRL,-
NY-PRL-2021_0208_05B09,EPI_ISL_1041361,2/6/21,B.1.526,PRL,-
NY-PRL-2021_0208_05C07,EPI_ISL_1041364,2/6/21,B.1.526,PRL,+
NY-PRL-2021_0208_05C12,EPI_ISL_1041369,2/6/21,B.1.526,PRL,+
NY-PRL-2021_0208_05D04,EPI_ISL_1041372,2/6/21,B.1.526,PRL,+
NY-PRL-2021_0208_05F01,EPI_ISL_1041386,2/6/21,B.1.526,PRL,+
NY-PRL-2021_0208_05F03,EPI_ISL_1041388,2/6/21,B.1.526.2,PRL,-
NY-PRL-2021_0208_05G09,EPI_ISL_1041397,2/6/21,B.1.526,PRL,+
NY-PRL-2021_0208_05G10,EPI_ISL_1041398,2/6/21,B.1.526,PRL,+
NY-PRL-2021_0208_05H02,EPI_ISL_1041400,2/6/21,B.1.526,PRL,+
NY-PRL-2021_0208_05H08,EPI_ISL_1041403,2/6/21,B.1.526,PRL,+
NY-PRL-2021_0208_05H11,EPI_ISL_1041405,2/6/21,B.1.526,PRL,-
NY-NYCPHL-003275,EPI_ISL_1064851,2/6/21,B.1.526,PHL,+
NY-PRL-2021_0208_00D07,EPI_ISL_994952,2/6/21,B.1.526,PRL,+
NY-PRL-2021_0208_00E04,EPI_ISL_994958,2/6/21,B.1.526,PRL,+
NY-PRL-2021_0208_00F03,EPI_ISL_994960,2/6/21,B.1.526,PRL,-
NY-PRL-2021_0208_00G10,EPI_ISL_994966,2/6/21,B.1.526,PRL,-
NY-PRL-2021_0208_00H01,EPI_ISL_994967,2/6/21,B.1.526.2,PRL,-
NY-PRL-2021_0208_00H02,EPI_ISL_994968,2/6/21,B.1.526,PRL,+
NY-PRL-2021_0208_00H10,EPI_ISL_994970,2/6/21,B.1.526,PRL,+
NY-PRL-2021_0208_00H11,EPI_ISL_994971,2/6/21,B.1.526,PRL,-
NY-PRL-2021_0208_04C04,EPI_ISL_994981,2/6/21,B.1.526,PRL,-
NY-PRL-2021_0208_04D06,EPI_ISL_994986,2/6/21,B.1.526.2,PRL,-
NY-PRL-2021_0208_04D08,EPI_ISL_994988,2/6/21,B.1.526.2,PRL,-
NY-PRL-2021_0208_04D10,EPI_ISL_994989,2/6/21,B.1.526,PRL,+
NY-PRL-2021_0208_04E10,EPI_ISL_994993,2/6/21,B.1.526.2,PRL,-
NY-PRL-2021_0208_04E11,EPI_ISL_994994,2/6/21,B.1.526.2,PRL,-
NY-PRL-2021_0208_04F11,EPI_ISL_995001,2/6/21,B.1.526,PRL,+
NY-PRL-2021_0208_04G05,EPI_ISL_995004,2/6/21,B.1.526,PRL,+
NY-PRL-2021_0210_00A01,EPI_ISL_995006,2/6/21,B.1.526.2,PRL,-
NY-PRL-2021_0210_00C09,EPI_ISL_995015,2/6/21,B.1.526,PRL,+
NY-PRL-2021_0210_00D02,EPI_ISL_995017,2/6/21,B.1.526,PRL,-
NY-PRL-2021_0210_00G03,EPI_ISL_995023,2/6/21,B.1.526,PRL,+
NY-PRL-2021_0210_03F08,EPI_ISL_1041300,2/7/21,B.1.526,PRL,+
NY-PRL-2021_0208_05E03,EPI_ISL_1041380,2/7/21,B.1.526,PRL,+
NY-PRL-2021_0208_05E06,EPI_ISL_1041383,2/7/21,B.1.526,PRL,-
NY-NYCPHL-003209,EPI_ISL_1064776,2/7/21,B.1.526,PHL,+
NY-NYCPHL-003278,EPI_ISL_1064810,2/7/21,B.1.526.2,PHL,-
NY-PRL-2021_0208_04D04,EPI_ISL_994985,2/7/21,B.1.526,PRL,+
NY-PRL-2021_0210_00B06,EPI_ISL_995010,2/7/21,B.1.526,PRL,+
NY-PRL-2021_0210_00F09,EPI_ISL_995020,2/7/21,B.1.526,PRL,+
NY-PRL-2021_0210_00G05,EPI_ISL_995024,2/7/21,B.1.526,PRL,+
NY-PRL-2021_0210_00G06,EPI_ISL_995025,2/7/21,B.1.526,PRL,+
NY-PRL-2021_0210_00G07,EPI_ISL_995026,2/7/21,B.1.526.2,PRL,-
NY-PRL-2021_0210_01C08,EPI_ISL_995040,2/7/21,B.1.526,PRL,+
NY-PRL-2021_0210_01H08,EPI_ISL_995056,2/7/21,B.1.526,PRL,+
NY-PRL-2021_0210_04A12,EPI_ISL_995060,2/7/21,B.1.526.2,PRL,-
NY-PRL-2021_0210_04H07,EPI_ISL_995078,2/7/21,B.1.526,PRL,-
NY-PRL-2021_0210_04F11,#N/A,2/8/21,B.1.526,PRL,-
NY-NYCPHL-003138,#N/A,2/8/21,B.1.526,PHL,+
NY-NYCPHL-003108,EPI_ISL_1018003,2/8/21,B.1.526.2,PHL,-
NY-NYCPHL-003112,EPI_ISL_1018004,2/8/21,B.1.526.2,PHL,-
NY-NYCPHL-003128,EPI_ISL_1018012,2/8/21,B.1.526,PHL,+
NY-NYCPHL-003129,EPI_ISL_1018013,2/8/21,B.1.526,PHL,+
NY-NYCPHL-003224,EPI_ISL_1018047,2/8/21,B.1.526.2,PHL,-
NY-PRL-2021_0210_02A12,EPI_ISL_1041233,2/8/21,B.1.526,PRL,-
NY-PRL-2021_0210_02B01,EPI_ISL_1041234,2/8/21,B.1.526,PRL,+
NY-PRL-2021_0210_02B07,EPI_ISL_1041238,2/8/21,B.1.526,PRL,+
NY-PRL-2021_0210_02B08,EPI_ISL_1041239,2/8/21,B.1.526,PRL,+
NY-PRL-2021_0210_02B09,EPI_ISL_1041240,2/8/21,B.1.526,PRL,+
NY-PRL-2021_0210_02C01,EPI_ISL_1041241,2/8/21,B.1.526.2,PRL,-
NY-PRL-2021_0210_02C02,EPI_ISL_1041242,2/8/21,B.1.526,PRL,+
NY-PRL-2021_0210_02C06,EPI_ISL_1041245,2/8/21,B.1.526.2,PRL,-
NY-PRL-2021_0210_02C12,EPI_ISL_1041247,2/8/21,B.1.526,PRL,+
NY-PRL-2021_0210_02D08,EPI_ISL_1041251,2/8/21,B.1.526,PRL,-
NY-PRL-2021_0210_02G04,EPI_ISL_1041262,2/8/21,B.1.526,PRL,-
NY-PRL-2021_0210_02H03,EPI_ISL_1041266,2/8/21,B.1.526,PRL,-
NY-PRL-2021_0210_02H04,EPI_ISL_1041267,2/8/21,B.1.526,PRL,+
NY-PRL-2021_0210_02H08,EPI_ISL_1041268,2/8/21,B.1.526,PRL,+
NY-PRL-2021_0210_02H09,EPI_ISL_1041269,2/8/21,B.1.526,PRL,+
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