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Hybrid Assembly of the Quorum-Quenching Isolate Variovorax paradoxus VAI-C Genome Sequence

Ne Ville, Christopher J. and Leadbetter, Jared R. and Orwin, Paul M. (2021) Hybrid Assembly of the Quorum-Quenching Isolate Variovorax paradoxus VAI-C Genome Sequence. Microbiology Resource Announcements, 10 (19). Art. No. e00265-21. ISSN 2576-098X. doi:10.1128/MRA.00265-21. https://resolver.caltech.edu/CaltechAUTHORS:20210518-080137849

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Abstract

Variovorax paradoxus VAI-C was isolated due to its ability to utilize acyl-homoserine lactones (AHLs) as the sole source of carbon, energy, and nitrogen. Here, we present a hybrid assembly of the V. paradoxus VAI-C genome sequence, consisting of a primary chromosome, a secondary chromid, and a plasmid.


Item Type:Article
Related URLs:
URLURL TypeDescription
https://doi.org/10.1128/mra.00265-21DOIArticle
https://www.ncbi.nlm.nih.gov/bioproject/PRJNA667957Related ItemData
https://www.ncbi.nlm.nih.gov/biosample/SAMN16392950Related ItemData
https://www.ncbi.nlm.nih.gov/nuccore/CP063166Related ItemData
https://www.ncbi.nlm.nih.gov/nuccore/CP063168Related ItemData
https://www.ncbi.nlm.nih.gov/sra/SRX9260397Related ItemData
https://www.ncbi.nlm.nih.gov/sra/SRX9260396Related ItemData
ORCID:
AuthorORCID
Leadbetter, Jared R.0000-0002-7033-0844
Orwin, Paul M.0000-0002-5435-9655
Additional Information:© 2021 Ne Ville et al. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license. Received 10 March 2021; Accepted 20 April 2021; Published 13 May 2021. Data availability: The assemblies and sequence data have been uploaded to the NCBI database. Variovorax paradoxus VAI-C can be found under BioProject number PRJNA667957, BioSample number SAMN16392950, and assembly numbers CP063166 through CP063168. The read data can be found under SRA accession numbers SRX9260397 and SRX9260396, including demultiplexed fastQ files with the barcodes removed for the MinION runs and paired fastQ files for the Illumina iSeq.
Issue or Number:19
DOI:10.1128/MRA.00265-21
Record Number:CaltechAUTHORS:20210518-080137849
Persistent URL:https://resolver.caltech.edu/CaltechAUTHORS:20210518-080137849
Official Citation:Hybrid Assembly of the Quorum-Quenching Isolate Variovorax paradoxus VAI-C Genome Sequence Christopher J. Ne Ville, Jared R. Leadbetter, Paul M. Orwin Microbiology Resource Announcements May 2021, 10 (19) e00265-21; DOI: 10.1128/MRA.00265-21
Usage Policy:No commercial reproduction, distribution, display or performance rights in this work are provided.
ID Code:109163
Collection:CaltechAUTHORS
Deposited By: Tony Diaz
Deposited On:19 May 2021 19:27
Last Modified:19 May 2021 19:27

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