da Veiga Beltrame, Eduardo and Arnaboldi, Valerio and Sternberg, Paul W. (2021) Single cell tools for WormBase. . (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20210712-143510822
![[img]](https://authors.library.caltech.edu/style/images/fileicons/application_pdf.png) |
PDF
- Submitted Version
Creative Commons Public Domain Dedication. 2MB |
Use this Persistent URL to link to this item: https://resolver.caltech.edu/CaltechAUTHORS:20210712-143510822
Abstract
We present two web apps for interactively performing common tasks with single cell RNA sequencing data: scdefg for interactive differential expression and wormcells-viz for visualization of gene expression. We made these tools available with public C. elegans datasets curated by WormBase at single-cell.wormbase.org. They can also be readily deployed for use with any other datasets using the source code available at github.com/WormBase/scdefg and at github.com/WormBase/wormcells-viz.
| Item Type: | Report or Paper (Discussion Paper) | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Related URLs: |
| ||||||||||||||||||
| ORCID: |
| ||||||||||||||||||
| Additional Information: | The copyright holder has placed this preprint in the Public Domain. It is no longer restricted by copyright. Anyone can legally share, reuse, remix, or adapt this material for any purpose without crediting the original authors. This version posted July 4, 2021. The authors would like to thank Paulo Nuin for reviewing the code, Tom Morrell for assistance with CaltechData, and Valentine Svensson for suggestions on the manuscript. This work was supported by grants NIH U24HG010859 and NIH U24HG002223. | ||||||||||||||||||
| Group: | WormBase | ||||||||||||||||||
| Funders: |
| ||||||||||||||||||
| DOI: | 10.1101/2021.07.04.451030 | ||||||||||||||||||
| Record Number: | CaltechAUTHORS:20210712-143510822 | ||||||||||||||||||
| Persistent URL: | https://resolver.caltech.edu/CaltechAUTHORS:20210712-143510822 | ||||||||||||||||||
| Official Citation: | Single cell tools for WormBase. Eduardo da Veiga Beltrame, Valerio Arnaboldi, Paul W. Sternberg. bioRxiv 2021.07.04.451030; doi: https://doi.org/10.1101/2021.07.04.451030 | ||||||||||||||||||
| Usage Policy: | No commercial reproduction, distribution, display or performance rights in this work are provided. | ||||||||||||||||||
| ID Code: | 109773 | ||||||||||||||||||
| Collection: | CaltechAUTHORS | ||||||||||||||||||
| Deposited By: | Tony Diaz | ||||||||||||||||||
| Deposited On: | 12 Jul 2021 15:00 | ||||||||||||||||||
| Last Modified: | 16 Nov 2021 19:37 |
Repository Staff Only: item control page
