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Automating crystal-structure phase mapping by combining deep learning with constraint reasoning

Chen, Di and Bai, Yiwei and Ament, Sebastian and Zhao, Wenting and Guevarra, Dan and Zhou, Lan and Selman, Bart and van Dover, R. Bruce and Gregoire, John M. and Gomes, Carla P. (2021) Automating crystal-structure phase mapping by combining deep learning with constraint reasoning. Nature Machine Intelligence, 3 (9). pp. 812-822. ISSN 2522-5839. doi:10.1038/s42256-021-00384-1. https://resolver.caltech.edu/CaltechAUTHORS:20210917-144224516

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Abstract

Crystal-structure phase mapping is a core, long-standing challenge in materials science that requires identifying crystal phases, or mixtures thereof, in X-ray diffraction measurements of synthesized materials. Phase mapping algorithms have been developed that excel at solving systems with up to several unique phase mixtures, where each phase has a readily distinguishable diffraction pattern. However, phase mapping is often beyond materials scientists’ capabilities and also poses challenges to state-of-the-art algorithms due to complexities such as the existence of dozens of phase mixtures, alloy-dependent variation in the diffraction patterns and multiple compositional degrees of freedom, creating a major bottleneck in high-throughput materials discovery. Here we show how to automate crystal-structure phase mapping. We formulate phase mapping as an unsupervised pattern demixing problem and describe how to solve it using deep reasoning networks (DRNets). DRNets combine deep learning with constraint reasoning for incorporating prior scientific knowledge and consequently require only a modest amount of (unlabelled) data. DRNets compensate for the limited data by exploiting and magnifying the rich prior knowledge about the thermodynamic rules governing the mixtures of crystals. DRNets are designed with an interpretable latent space for encoding prior-knowledge domain constraints and seamlessly integrate constraint reasoning into neural network optimization. DRNets surpass previous approaches on crystal-structure phase mapping, unravelling the Bi–Cu–V oxide phase diagram and aiding the discovery of solar fuels materials.


Item Type:Article
Related URLs:
URLURL TypeDescription
https://doi.org/10.1038/s42256-021-00384-1DOIArticle
https://rdcu.be/cxXLiPublisherFree ReadCube access
https://arxiv.org/abs/2108.09523arXivDiscussion Paper
https://www.cs.cornell.edu/gomes/udiscoverit/?tag=materialsRelated ItemData
https://github.com/gomes-lab/DRNets-Nature-Machine-IntelligenceRelated ItemCode
ORCID:
AuthorORCID
Guevarra, Dan0000-0002-9592-3195
van Dover, R. Bruce0000-0002-6166-5650
Gregoire, John M.0000-0002-2863-5265
Gomes, Carla P.0000-0002-4441-7225
Alternate Title:Automating Crystal-Structure Phase Mapping: Combining Deep Learning with Constraint Reasoning
Additional Information:© 2021 Nature Publishing Group. Received 30 September 2020; Accepted 23 July 2021; Published 16 September 2021. The development of DRNets was supported by the US National Science Foundation, under the Expeditions in Computing award CCF-1522054 (C.P.G., B.S., J.M.G., D.C., S.A., Y.B. and W.Z.) and award CNS-1059284 (C.P.G.). DRNets for phase mapping and corresponding experimental work were also supported by the US AFOSR Multidisciplinary University Research Initiative (MURI) under award FA9550-18-1-0136 (R.B.v.D., C.P.G., B.S., J.M.G., D.C., Y.B. and S.A.), a compute cluster under the Defense University Research Instrumentation Program (DURIP), award W911NF-17-1-0187 (C.P.G.) and an award from the Toyota Research Institute (J.M.G., C.P.G., D.C., Y.B. and S.A.). Solar fuels experiments were supported by the US Department of Energy (DOE) under award DESC0004993 (J.M.G., D.A. and L.Z.) and solar photochemistry analysis in the context of the DRNets solution was supported by the US DOE under award DE-SC0020383 (J.M.G. and D.A.). We also thank J. Bai for assistance with running the IAFD baseline, A. Shinde for photoelectrochemistry experiments and R. Berstein for assistance with figure generation. Data availability: Data are available from ‘UDiscoverIt: Materials’ (https://www.cs.cornell.edu/gomes/udiscoverit/?tag=materials) and also from GitHub (https://github.com/gomes-lab/DRNets-Nature-Machine-Intelligence). Source data are provided with this paper. Code availability: Code is available from ‘UDiscoverIt: Materials’ (https://www.cs.cornell.edu/gomes/udiscoverit/?tag=materials) and also from GitHub (https://github.com/gomes-lab/DRNets-Nature-Machine-Intelligence). Author Contributions: C.P.G. conceived and managed the overall study. J.M.G. and C.P.G. conceived and managed the crystal-structure phase mapping project. D.C. and C.P.G. conceived the MNIST-Sudoku project. D.C. and C.P.G. conceptualized the DRNets. D.C. developed and implemented DRNets, in particular DRNets for MNIST-Sudoku and crystal-structure phase mapping. Y.B. performed the large-scale experiments, assisted on implementing DRNets for MNIST-Sudoku, and carried out baseline comparisons for MNIST-Sudoku. S.A. performed background subtraction for the Bi–Cu–V–O system. W.Z. implemented baselines for crystal-structure phase mapping and assisted on generating MNIST-Sudoku data. L.Z. and D.G. generated phase mapping datasets and interpreted and validated solutions. C.P.G., D.C. and J.M.G. were the main authors of the manuscript, with contributions from B.S. and R.B.v.D. and comments from all authors. The authors declare no competing interests. Peer review information: Nature Machine Intelligence thanks Artur Garcez, Olga Kononova and the other, anonymous, reviewer(s) for their contribution to the peer review of this work.
Group:JCAP, Liquid Sunlight Alliance
Funders:
Funding AgencyGrant Number
NSFCCF-1522054
NSFCNS-1059284
Air Force Office of Scientific Research (AFOSR)FA9550-18-1-0136
Army Research Office (ARO)W911NF-17-1-0187
Toyota Research InstituteUNSPECIFIED
Department of Energy (DOE)DE-SC0004993
Department of Energy (DOE)DE-SC0020383
Subject Keywords:Computer science; Materials science
Issue or Number:9
DOI:10.1038/s42256-021-00384-1
Record Number:CaltechAUTHORS:20210917-144224516
Persistent URL:https://resolver.caltech.edu/CaltechAUTHORS:20210917-144224516
Official Citation:Chen, D., Bai, Y., Ament, S. et al. Automating crystal-structure phase mapping by combining deep learning with constraint reasoning. Nat Mach Intell 3, 812–822 (2021). https://doi.org/10.1038/s42256-021-00384-1
Usage Policy:No commercial reproduction, distribution, display or performance rights in this work are provided.
ID Code:110927
Collection:CaltechAUTHORS
Deposited By: Tony Diaz
Deposited On:17 Sep 2021 15:32
Last Modified:17 Sep 2021 15:32

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