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Carbon nanotube–mediated DNA delivery without transgene integration in intact plants

Demirer, Gozde S. and Zhang, Huan and Goh, Natalie S. and González-Grandío, Eduardo and Landry, Markita P. (2019) Carbon nanotube–mediated DNA delivery without transgene integration in intact plants. Nature Protocols, 14 (10). pp. 2954-2971. ISSN 1754-2189. doi:10.1038/s41596-019-0208-9. https://resolver.caltech.edu/CaltechAUTHORS:20220302-323714000

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Abstract

Exogenous biomolecule delivery into plants is difficult because the plant cell wall poses a dominant transport barrier, thereby limiting the efficiency of plant genetic engineering. Traditional DNA delivery methods for plants suffer from host-species limitations, low transformation efficiencies, tissue damage, or unavoidable and uncontrolled DNA integration into the host genome. We have demonstrated efficient plasmid DNA delivery into intact plants of several species with functionalized high-aspect-ratio carbon nanotube (CNT) nanoparticles (NPs), enabling efficient DNA delivery into a variety of non-model plant species (arugula, wheat, and cotton) and resulting in high protein expression levels without transgene integration. Herein, we provide a protocol that can be implemented by plant biologists and adapted to produce functionalized single-walled CNTs (SWNTs) with surface chemistries optimized for delivery of plasmid DNA in a plant species–independent manner. This protocol describes how to prepare, construct, and optimize polyethylenimine (PEI)-functionalized SWNTs and perform plasmid DNA loading. The authors also provide guidance on material characterization, gene expression evaluation, and storage conditions. The entire protocol, from the covalent functionalization of SWNTs to expression quantification, can be completed in 5 d.


Item Type:Article
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URLURL TypeDescription
https://doi.org/10.1038/s41596-019-0208-9DOIArticle
https://rdcu.be/cIblfPublisherFree ReadCube access
ORCID:
AuthorORCID
Demirer, Gozde S.0000-0002-3007-1489
Zhang, Huan0000-0002-1096-4255
González-Grandío, Eduardo0000-0002-2059-4542
Landry, Markita P.0000-0002-5832-8522
Additional Information:© 2019 Nature Publishing Group. Received 16 April 2019. Accepted 06 June 2019. Published 18 September 2019. Issue Date October 2019. We acknowledge support from a Burroughs Wellcome Fund Career Award at the Scientific Interface (CASI), a Stanley Fahn PDF Junior Faculty Grant under award no. PF-JFA-1760, a Beckman Foundation Young Investigator Award, a USDA AFRI award, a grant from the Gordon and Betty Moore Foundation, a USDA NIFA award, a USDA-BBT EAGER award, support from the Chan-Zuckerberg Foundation, and an FFAR New Innovator Award (to M.P.L.). G.S.D. was supported by a Schlumberger Foundation Faculty for the Future Fellowship. H.Z. acknowledges the support of the National Natural Science Foundation of China (21605153). We also acknowledge support from the UC Berkeley Molecular Imaging Center (supported by the Gordon and Betty Moore Foundation), the QB3 Shared Stem Cell Facility, and the Innovative Genomics Institute (IGI). We are grateful to the Staskawicz lab at UC Berkeley for the N. benthamiana seeds. Data availability. All materials are available from commercial sources or can be derived using methods described in this study. All primary data underlying the figures reported in the article can be obtained from the corresponding author upon reasonable request. These authors contributed equally: Gozde S. Demirer, Huan Zhang. Contributions. G.S.D. and M.P.L. designed the experiments. G.S.D., H.Z., and N.S.G. performed the experiments. G.S.D. analyzed the data and created the figures. G.S.D., H.Z., N.S.G., and E.G.G. wrote the manuscript. All authors approved the manuscript. The authors declare no competing interests. Peer review information. Nature Protocols thanks Ardemis Boghossian, Mohammad Ramezani and other anonymous reviewer(s) for their contribution to the peer review of this work.
Funders:
Funding AgencyGrant Number
Burroughs Wellcome FundUNSPECIFIED
Parkinson's FoundationPF-JFA-1760
Arnold and Mabel Beckman FoundationUNSPECIFIED
Department of AgricultureUNSPECIFIED
Gordon and Betty Moore FoundationUNSPECIFIED
Chan-Zuckerberg FoundationUNSPECIFIED
Foundation for Food ResearchUNSPECIFIED
Schlumberger FoundationUNSPECIFIED
National Natural Science Foundation of China21605153
University of California, BerkeleyUNSPECIFIED
Innovative Genomics InstituteUNSPECIFIED
Issue or Number:10
DOI:10.1038/s41596-019-0208-9
Record Number:CaltechAUTHORS:20220302-323714000
Persistent URL:https://resolver.caltech.edu/CaltechAUTHORS:20220302-323714000
Official Citation:Demirer, G.S., Zhang, H., Goh, N.S. et al. Carbon nanotube–mediated DNA delivery without transgene integration in intact plants. Nat Protoc 14, 2954–2971 (2019). https://doi.org/10.1038/s41596-019-0208-9
Usage Policy:No commercial reproduction, distribution, display or performance rights in this work are provided.
ID Code:113690
Collection:CaltechAUTHORS
Deposited By: George Porter
Deposited On:04 Mar 2022 00:09
Last Modified:04 Mar 2022 00:09

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