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Probabilistic sensitivity analysis of biochemical reaction systems

Zhang, Hong-Xuan and Dempsey, William P. and Goutsias, John (2009) Probabilistic sensitivity analysis of biochemical reaction systems. Journal of Chemical Physics, 131 (9). Art. No. 094101. ISSN 0021-9606. http://resolver.caltech.edu/CaltechAUTHORS:20090923-143135736

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Abstract

Sensitivity analysis is an indispensable tool for studying the robustness and fragility properties of biochemical reaction systems as well as for designing optimal approaches for selective perturbation and intervention. Deterministic sensitivity analysis techniques, using derivatives of the system response, have been extensively used in the literature. However, these techniques suffer from several drawbacks, which must be carefully considered before using them in problems of systems biology. We develop here a probabilistic approach to sensitivity analysis of biochemical reaction systems. The proposed technique employs a biophysically derived model for parameter fluctuations and, by using a recently suggested variance-based approach to sensitivity analysis [Saltelli et al., Chem. Rev. (Washington, D.C.) 105, 2811 (2005)], it leads to a powerful sensitivity analysis methodology for biochemical reaction systems. The approach presented in this paper addresses many problems associated with derivative-based sensitivity analysis techniques. Most importantly, it produces thermodynamically consistent sensitivity analysis results, can easily accommodate appreciable parameter variations, and allows for systematic investigation of high-order interaction effects. By employing a computational model of the mitogen-activated protein kinase signaling cascade, we demonstrate that our approach is well suited for sensitivity analysis of biochemical reaction systems and can produce a wealth of information about the sensitivity properties of such systems. The price to be paid, however, is a substantial increase in computational complexity over derivative-based techniques, which must be effectively addressed in order to make the proposed approach to sensitivity analysis more practical.


Item Type:Article
Related URLs:
URLURL TypeDescription
http://dx.doi.org/10.1063/1.3205092DOIUNSPECIFIED
http://link.aip.org/link/?JCPSA6/131/094101/1PublisherUNSPECIFIED
Additional Information:©2009 American Institute of Physics. Received 22 May 2009; accepted 24 July 2009; published 1 September 2009. The authors acknowledge the National Science Foundation (NSF) for support of this research. Special thanks to Garrett Jenkinson for fruitful discussions and suggestions.
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Funding AgencyGrant Number
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Subject Keywords:biochemistry; chemical reactions; computational complexity; enzymes; molecular biophysics; physiological models; sensitivity analysis; statistical analysis
Classification Code:PACS # 87.15.R- Biochemical reactions and kinetics # 87.14.ej Enzymes # 02.70.Rr General statistical methods
Record Number:CaltechAUTHORS:20090923-143135736
Persistent URL:http://resolver.caltech.edu/CaltechAUTHORS:20090923-143135736
Usage Policy:No commercial reproduction, distribution, display or performance rights in this work are provided.
ID Code:16023
Collection:CaltechAUTHORS
Deposited By: George Porter
Deposited On:02 Oct 2009 22:58
Last Modified:26 Dec 2012 11:25

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