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BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems

Le Novère, Nicolas and Bornstein, Benjamin and Broicher, Alexander and Courtot, Mélanie and Donizelli, Marco and Dharuri, Harish and Li, Lu and Sauro, Herbert and Schilstra, Maria and Shapiro, Bruce and Snoep, Jacky L. and Hucka, Michael (2006) BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems. Nucleic Acids Research, 34 (Databa). D689-D691. ISSN 0305-1048. PMCID PMC1347454. https://resolver.caltech.edu/CaltechAUTHORS:LENnar06

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Abstract

BioModels Database (http://www.ebi.ac.uk/biomodels/), part of the international initiative BioModels.net, provides access to published, peer-reviewed, quantitative models of biochemical and cellular systems. Each model is carefully curated to verify that it corresponds to the reference publication and gives the proper numerical results. Curators also annotate the components of the models with terms from controlled vocabularies and links to other relevant data resources. This allows the users to search accurately for the models they need. The models can currently be retrieved in the SBML format, and import/export facilities are being developed to extend the spectrum of formats supported by the resource.


Item Type:Article
Related URLs:
URLURL TypeDescription
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347454/PubMed CentralArticle
https://doi.org/10.1093/nar/gkj092DOIUNSPECIFIED
https://doi.org/10.1093/nar/gkj092DOIUNSPECIFIED
ORCID:
AuthorORCID
Hucka, Michael0000-0001-9105-5960
Additional Information:© The Author 2006. Published by Oxford University Press. All rights reserved The online version of this article has been published under an open access model. Users are entitled to use, reproduce, disseminate, or display the open access version of this article for non-commercial purposes provided that: the original authorship is properly and fully attributed; the Journal and Oxford University Press are attributed as the original place of publication with the correct citation details given; if an article is subsequently reproduced or disseminated not in its entirety but only in part or as a derivative work this must be clearly indicated. Received July 29, 2005. Revised October 4, 2005. Accepted October 16, 2005. Authors thank G. Bard Ermentrout, Sarah Keating, Joanne Matthews and Nicolas Rodriguez for sharing their code. Funding to pay the Open Access publication charges for this article was provided by EMBL.
Issue or Number:Databa
PubMed Central ID:PMC1347454
Record Number:CaltechAUTHORS:LENnar06
Persistent URL:https://resolver.caltech.edu/CaltechAUTHORS:LENnar06
Usage Policy:No commercial reproduction, distribution, display or performance rights in this work are provided.
ID Code:1630
Collection:CaltechAUTHORS
Deposited By: Archive Administrator
Deposited On:08 Feb 2006
Last Modified:02 Oct 2019 22:45

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