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Automated Tracking of Multiple C. Elegans

Fontaine, Ebraheem and Burdick, Joel and Barr, Alan (2006) Automated Tracking of Multiple C. Elegans. In: 2006 28th Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE , Piscataway, NJ, pp. 574-577. ISBN 978-1-4244-0032-4 . https://resolver.caltech.edu/CaltechAUTHORS:20110211-083304473

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Abstract

This paper presents a method for model based automated tracking of multiple worm-like creatures. These methods are essential for accurate quantitative analysis into the genetic basis of behavior that involve more than one organism. An accurate worm model is designed using the geometry of planar curves and nonlinear estimation of the model’s parameters are performed using a central difference Kalman filter (CDKF). The filter can naturally be expanded to estimate the locations of multiple worms and determine when they are occluding each other. The predicted location of the models at each iteration allows for an efficient method to determine the regions that are undergoing occlusions. Experiments on actual C. Elegans mating sequence data demonstrate the quality of the proposed method.


Item Type:Book Section
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http://dx.doi.org/10.1109/IEMBS.2006.260657 DOIArticle
Additional Information:© 2006 IEEE. Issue Date: Aug. 30 2006-Sept. 3 2006; Date of Current Version: 05 March 2008. T he authors are grateful to the Beckman Institute Foundation for support of this work. We also thank Dr. Allyson Whittaker for supplying the video sequences used in this analysis.
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Caltech Beckman InstituteUNSPECIFIED
Record Number:CaltechAUTHORS:20110211-083304473
Persistent URL:https://resolver.caltech.edu/CaltechAUTHORS:20110211-083304473
Official Citation:Fontaine, E.; Burdick, J.; Barr, A.; , "Automated Tracking of Multiple C. Elegans," Engineering in Medicine and Biology Society, 2006. EMBS '06. 28th Annual International Conference of the IEEE , vol., no., pp.3716-3719, Aug. 30 2006-Sept. 3 2006 doi: 10.1109/IEMBS.2006.260657 URL: http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=4462606&isnumber=4461641
Usage Policy:No commercial reproduction, distribution, display or performance rights in this work are provided.
ID Code:22126
Collection:CaltechAUTHORS
Deposited By: Benjamin Perez
Deposited On:11 Feb 2011 18:08
Last Modified:03 Oct 2019 02:34

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