CaltechAUTHORS
  A Caltech Library Service

Dynamical Consequences of Bandpass Feedback Loops in a Bacterial Phosphorelay

Sen, Shaunak and Garcia-Ojalvo, Jordi and Elowitz, Michael B. (2011) Dynamical Consequences of Bandpass Feedback Loops in a Bacterial Phosphorelay. PLoS ONE, 6 (9). Art. No. e25102. ISSN 1932-6203. PMCID PMC3182994. https://resolver.caltech.edu/CaltechAUTHORS:20111209-090440032

[img]
Preview
PDF - Published Version
Creative Commons Attribution.

1034Kb
[img]
Preview
PDF (Text S1) - Supplemental Material
Creative Commons Attribution.

94Kb
[img]
Preview
PDF (Figure S1) - Supplemental Material
Creative Commons Attribution.

41Kb
[img]
Preview
PDF (Figure S2) - Supplemental Material
Creative Commons Attribution.

52Kb
[img]
Preview
PDF (Figure S3) - Supplemental Material
Creative Commons Attribution.

34Kb
[img]
Preview
PDF (Figure S4) - Supplemental Material
Creative Commons Attribution.

24Kb
[img]
Preview
PDF (Figure S5) - Supplemental Material
Creative Commons Attribution.

123Kb

Use this Persistent URL to link to this item: https://resolver.caltech.edu/CaltechAUTHORS:20111209-090440032

Abstract

Under conditions of nutrient limitation, Bacillus subtilis cells terminally differentiate into a dormant spore state. Progression to sporulation is controlled by a genetic circuit consisting of a phosphorelay embedded in multiple transcriptional feedback loops, which is used to activate the master regulator Spo0A by phosphorylation. These transcriptional regulatory interactions are “bandpass”-like, in the sense that activation occurs within a limited band of Spo0A~P concentrations. Additionally, recent results show that the phosphorelay activation occurs in pulses, in a cell-cycle dependent fashion. However, the impact of these pulsed bandpass interactions on the circuit dynamics preceding sporulation remains unclear. In order to address this question, we measured key features of the bandpass interactions at the single-cell level and analyzed them in the context of a simple mathematical model. The model predicted the emergence of a delayed phase shift between the pulsing activity of the different sporulation genes, as well as the existence of a stable state, with elevated Spo0A activity but no sporulation, embedded within the dynamical structure of the system. To test the model, we used time-lapse fluorescence microscopy to measure dynamics of single cells initiating sporulation. We observed the delayed phase shift emerging during the progression to sporulation, while a re-engineering of the sporulation circuit revealed behavior resembling the predicted additional state. These results show that periodically-driven bandpass feedback loops can give rise to complex dynamics in the progression towards sporulation.


Item Type:Article
Related URLs:
URLURL TypeDescription
http://dx.doi.org/10.1371/journal.pone.0025102 DOIArticle
http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0025102PublisherArticle
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3182994/PubMed CentralArticle
ORCID:
AuthorORCID
Sen, Shaunak0000-0002-1412-8633
Elowitz, Michael B.0000-0002-1221-0967
Additional Information:© 2011 Sen et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Received March 4, 2011; Accepted August 26, 2011; Published September 29, 2011. Editor: Vladimir Brezina, Mount Sinai School of Medicine, United States of America. Funding: S.S. acknowledges financial support from the Betty and Gordon Moore Foundation, Caltech through the Poincare Fellowship. Funding for J.G.-O. is provided by the Ministerio de Ciencia e Innovacion (Spain, project FIS2009-13360), Instituto de Salud Carlos III (Spain, REEM network), and by the ICREA Academia Programme. Funding for M.B.E. is provided by NIH grant R01GM079771 and US National Science Foundation CAREER Award 0644463. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. We thank C. Dalal, J. Locke, J. Levine, J. Young, R. Murray, and members of the Elowitz laboratory for comments. Author Contributions: Conceived and designed the experiments: SS JGO MBE. Performed the experiments: SS. Analyzed the data: SS JGO MBE. Wrote the paper: SS JGO MBE.
Funders:
Funding AgencyGrant Number
Betty and Gordon Moore Foundation UNSPECIFIED
Ministerio de Ciencia e Innovación (MCINN)FIS2009-13360
Instituto de Salud Carlos IIIUNSPECIFIED
ICREA Academia ProgrammeUNSPECIFIED
NIHR01GM079771
NSFMCB-0644463
Caltech UNSPECIFIED
Issue or Number:9
PubMed Central ID:PMC3182994
Record Number:CaltechAUTHORS:20111209-090440032
Persistent URL:https://resolver.caltech.edu/CaltechAUTHORS:20111209-090440032
Official Citation:Sen S, Garcia-Ojalvo J, Elowitz MB (2011) Dynamical Consequences of Bandpass Feedback Loops in a Bacterial Phosphorelay. PLoS ONE 6(9): e25102. doi:10.1371/journal.pone.0025102
Usage Policy:No commercial reproduction, distribution, display or performance rights in this work are provided.
ID Code:28385
Collection:CaltechAUTHORS
Deposited By: Tony Diaz
Deposited On:13 Dec 2011 16:06
Last Modified:03 Oct 2019 03:31

Repository Staff Only: item control page