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How broadly tuned olfactory receptors equally recognize their agonists. Human OR1G1 as a test case

Charlier, Landry and Topin, Jérémie and Ronin, Catherine and Kim, Soo-Kyung and Goddard, William A., III and Efremov, Roman and Golebiowski, Jérôme (2012) How broadly tuned olfactory receptors equally recognize their agonists. Human OR1G1 as a test case. Cellular and Molecular Life Sciences, 69 (24). pp. 4205-4213. ISSN 1420-682X. https://resolver.caltech.edu/CaltechAUTHORS:20130108-114918088

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Abstract

The molecular features that dominate the binding mode of agonists by a broadly tuned olfactory receptor are analyzed through a joint approach combining cell biology, calcium imaging, and molecular modeling. The odorant/receptor affinities, estimated through statistics accrued during molecular dynamics simulations, are in accordance with the experimental ranking. Although in many systems receptors recognize their target through a network of oriented interactions, such as H-bonding, the binding by broadly tuned olfactory receptors is dominated by non-polar terms. We show how such a feature allows chemicals belonging to different chemical families to similarly activate the receptors through compensations of interactions within the binding site.


Item Type:Article
Related URLs:
URLURL TypeDescription
http://dx.doi.org/10.1007/s00018-012-1116-0DOIUNSPECIFIED
http://link.springer.com/article/10.1007%2Fs00018-012-1116-0PublisherUNSPECIFIED
ORCID:
AuthorORCID
Goddard, William A., III0000-0003-0097-5716
Additional Information:© 2012 Springer Basel AG. Received: 1 March 2012; Revised: 25 July 2012; Accepted: 30 July 2012; Published online: 29 August 2012. The CINES provided computer time. JG acknowledges the University of Nice Sophia Antipolis for funding the project Olfactome. Dr. Steffen Wolf and Pr. Klaus Gerwert are acknowledged for sending the structure of hOR2AG1. Dr. Ravinder Abrol helped in GPCR ab initio modeling.
Funders:
Funding AgencyGrant Number
University of Nice Sophia AntipolisUNSPECIFIED
Subject Keywords:Molecular dynamics; Free energy; Odorant; GPCR; Structure
Issue or Number:24
Record Number:CaltechAUTHORS:20130108-114918088
Persistent URL:https://resolver.caltech.edu/CaltechAUTHORS:20130108-114918088
Usage Policy:No commercial reproduction, distribution, display or performance rights in this work are provided.
ID Code:36235
Collection:CaltechAUTHORS
Deposited By: Jason Perez
Deposited On:09 Jan 2013 19:45
Last Modified:26 Nov 2019 11:15

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