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SBML Level 3 Package Specification: Hierarchical Model Composition, Version 1 Draft

Smith, Lucian P. and Hucka, Michael (2011) SBML Level 3 Package Specification: Hierarchical Model Composition, Version 1 Draft. SBML Level 3 Package Specification, . (Unpublished) http://resolver.caltech.edu/CaltechAUTHORS:20130108-165049385

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Abstract

In the context of SBML, “hierarchical model composition” refers to the ability to include models as submodels inside another model. The goal is to support the ability of modelers and software tools to do such things as (1) decompose larger models into smaller ones, as a way to manage complexity; (2) incorporate multiple instances of a given model within one or more enclosing models, to avoid literal duplication of repeated elements; and (3) create libraries of reusable, tested models, much as is done in software development and other engineering fields.


Item Type:Report or Paper (Working Paper)
ORCID:
AuthorORCID
Hucka, Michael0000-0001-9105-5960
Additional Information:We thank Andrew Finney, Nicolas Le Novère, Stefan Hoops, Martin Ginkel, Wolfram Leibermeister, Ranjit Randhawa, Jonathan Webb, Frank Bergmann, Sarah Keating, Sven Sahle, James Schaff, Chris Myers, and the members of the sbml-comp Package Working Group for prior work, suggestions, and comments that helped shape the Hierarchical Model Composition package as you see it today. We also thank with great enthusiasm the financial support of the National Institutes of Health (USA) under grant R01 GM070923 to M. Hucka.
Funders:
Funding AgencyGrant Number
NIHR01 GM070923
Record Number:CaltechAUTHORS:20130108-165049385
Persistent URL:http://resolver.caltech.edu/CaltechAUTHORS:20130108-165049385
Usage Policy:No commercial reproduction, distribution, display or performance rights in this work are provided.
ID Code:36253
Collection:CaltechAUTHORS
Deposited By: Linda Taddeo
Deposited On:09 Jan 2013 15:51
Last Modified:21 Dec 2016 22:54

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