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Digital biology and chemistry

Witters, Daan and Sun, Bing and Begolo, Stefano and Rodriguez-Manzano, Jesus and Robles, Whitney and Ismagilov, Rustem F. (2014) Digital biology and chemistry. Lab on a Chip, 14 (17). pp. 3225-3232. ISSN 1473-0197. http://resolver.caltech.edu/CaltechAUTHORS:20140606-091339805

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Abstract

This account examines developments in “digital” biology and chemistry within the context of microfluidics, from a personal perspective. Using microfluidics as a frame of reference, we identify two areas of research within digital biology and chemistry that are of special interest: (i) the study of systems that switch between discrete states in response to changes in chemical concentration of signals, and (ii) the study of single biological entities such as molecules or cells. In particular, microfluidics accelerates analysis of switching systems (i.e., those that exhibit a sharp change in output over a narrow range of input) by enabling monitoring of multiple reactions in parallel over a range of concentrations of signals. Conversely, such switching systems can be used to create new kinds of microfluidic detection systems that provide “analog-to-digital” signal conversion and logic. Microfluidic compartmentalization technologies for studying and isolating single entities can be used to reconstruct and understand cellular processes, study interactions between single biological entities, and examine the intrinsic heterogeneity of populations of molecules, cells, or organisms. Furthermore, compartmentalization of single cells or molecules in “digital” microfluidic experiments can induce switching in a range of reaction systems to enable sensitive detection of cells or biomolecules, such as with digital ELISA or digital PCR. This “digitizing” offers advantages in terms of robustness, assay design, and simplicity because quantitative information can be obtained with qualitative measurements. While digital formats have been shown to improve the robustness of existing chemistries, we anticipate that in the future they will enable new chemistries to be used for quantitative measurements, and that digital biology and chemistry will continue to provide further opportunities for measuring biomolecules, understanding natural systems more deeply, and advancing molecular and cellular analysis. Microfluidics will impact digital biology and chemistry and will also benefit from them if it becomes massively distributed.


Item Type:Article
Related URLs:
URLURL TypeDescription
http://dx.doi.org/10.1039/c4lc00248bDOIArticle
http://pubs.rsc.org/en/Content/ArticleLanding/2014/LC/c4lc00248b#!divAbstractPublisherArticle
ORCID:
AuthorORCID
Ismagilov, Rustem F.0000-0002-3680-4399
Additional Information:© 2014 The Royal Society of Chemistry. This article is licensed under a Creative Commons Attribution 3.0 Unported Licence. Received 27 Feb 2014, Accepted 19 May 2014, First published online 02 Jun 2014. We would like to thank the five-year-old volunteer for performing the demonstration in Video S1, the six-year-old volunteer for performing the demonstration shown in Video S2, and Liang Li of SlipChip Corp. for providing the chip used in this experiment. Disclosure: R.F.I. has a financial interest in SlipChip Corp.
Record Number:CaltechAUTHORS:20140606-091339805
Persistent URL:http://resolver.caltech.edu/CaltechAUTHORS:20140606-091339805
Usage Policy:No commercial reproduction, distribution, display or performance rights in this work are provided.
ID Code:46116
Collection:CaltechAUTHORS
Deposited By: Tony Diaz
Deposited On:06 Jun 2014 17:17
Last Modified:23 Mar 2015 21:38

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