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Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE)

Waltemath, Dagmar and Bergmann, Frank T. and Chaouiya, Claudine and Czauderna, Tobias and Gleeson, Padraig and Goble, Carole and Golebiewski, Martin and Hucka, Michael and Juty, Nick and Krebs, Olga and Le Novère, Nicolas and Mi, Huaiyu and Moraru, Ion I. and Myers, Chris J. and Nickerson, David and Olivier, Brett G. and Rodriguez, Nicolas and Schreiber, Falk and Smith, Lucian and Zhang, Fengkai and Bonnet, Eric (2014) Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE). Standards in Genomics Sciences (SIGS), 9 (3). ISSN 1944-3277. https://resolver.caltech.edu/CaltechAUTHORS:20140815-121625086

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Abstract

The Computational Modeling in Biology Network (COMBINE) is an initiative to coordinate the development of community standards and formats in computational systems biology and related fields. This report summarizes the topics and activities of the fourth edition of the annual COMBINE meeting that took place in Paris September 16-20 2013, and hosted a total of 96 attendees. This edition pioneered a first day devoted to modeling approaches in biology, attracting a broad audience of scientists with a panel of renowned speakers. During the other days, discussions took place about novel standard features, new tools using the standards, and outreaching efforts. A great deal of emphasis went into extensions of the SBML format as packages, and also community building. This year’s edition showed again that the COMBINE community is thriving, and manages well the coordination of the different standard formats.


Item Type:Article
Related URLs:
URLURL TypeDescription
https://doi.org/10.4056/sigs.5279417DOIArticle
https://doi.org/10.1186/s40793-018-0320-4DOIErratum
ORCID:
AuthorORCID
Waltemath, Dagmar0000-0002-5886-5563
Hucka, Michael0000-0001-9105-5960
Additional Information:© 2014 retained by original authors. epub-ppub publication date: March 15, 2014. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
Errata:Following publication of the original article [1], the author requested this addition to the ‘Acknowledgements’ section of the article: “DW is funded by the German Federal Ministry of Education and Research (e: Bio program SEMS, FKZ 031 6194)”.
Funders:
Funding AgencyGrant Number
Michigan State UniversityUNSPECIFIED
Department of Energy (DOE)DE-FG02-08ER64707
Bundesministerium für Bildung und Forschung (BMBF)FKZ 031 6194
Subject Keywords:COMBINE, SBML, BioPAX, CellML, SBGN, Markup, Systems Biology, Modeling
Issue or Number:3
Record Number:CaltechAUTHORS:20140815-121625086
Persistent URL:https://resolver.caltech.edu/CaltechAUTHORS:20140815-121625086
Official Citation:WALTEMATH, D., BERGMANN, F., CHAOUIYA, C., CZAUDERNA, T., GLEESON, P., GOBLE, C., GOLEBIEWSKI, M., HUCKA, M., JUTY, N., KREBS, O., LE NOVèRE, N., MI, H., MORARU, I., MYERS, C., NICKERSON, D., OLIVIER, B., RODRIGUEZ, N., SCHREIBER, F., SMITH, L., ZHANG, F., BONNET, E.. Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE). Standards in Genomic Sciences, North America, 9, mar. 2014. Available at: <http://standardsingenomics.org/index.php/sigen/article/view/sigs.5279417>.
Usage Policy:No commercial reproduction, distribution, display or performance rights in this work are provided.
ID Code:48618
Collection:CaltechAUTHORS
Deposited By: Ruth Sustaita
Deposited On:21 Aug 2014 00:21
Last Modified:03 Oct 2019 07:05

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