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WormBase: new content and better access

Bieri, Tamberlyn and Blasiar, Darin and Ozersky, Philip and Antoshechkin, Igor and Bastiani, Carol and Canaran, Payan and Chan, Juancarlos and Chen, Nansheng and Chen, Wen J. and Davis, Paul and Fiedler, Tristan J. and Girard, Lisa and Han, Michael and Harris, Todd W. and Kishore, Ranjana and Lee, Raymond and McKay, Sheldon and Müller, Hans-Michael and Nakamura, Cecilia and Petcherski, Andrei and Rangarajan, Arun and Rogers, Anthony and Schindelman, Gary and Schwarz, Erich M. and Spooner, Will and Tuli, Mary Ann and Van Auken, Kimberly and Wang, Daniel and Wang, Xiaodong and Williams, Gary and Durbin, Richard and Stein, Lincoln D. and Sternberg, Paul W. and Spieth, John (2006) WormBase: new content and better access. Nucleic Acids Research, 35 (Databa). D1-D5. ISSN 0305-1048. PMCID PMC1669750. https://resolver.caltech.edu/CaltechAUTHORS:BIEnar06advacc

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Abstract

WormBase (http://wormbase.org), a model organism database for Caenorhabditis elegans and other related nematodes, continues to evolve and expand. Over the past year WormBase has added new data on C.elegans, including data on classical genetics, cell biology and functional genomics; expanded the annotation of closely related nematodes with a new genome browser for Caenorhabditis remanei; and deployed new hardware for stronger performance. Several existing datasets including phenotype descriptions and RNAi experiments have seen a large increase in new content. New datasets such as the C.remanei draft assembly and annotations, the Vancouver Fosmid library and TEC-RED 5' end sites are now available as well. Access to and searching WormBase has become more dependable and flexible via multiple mirror sites and indexing through Google.


Item Type:Article
Related URLs:
URLURL TypeDescription
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1669750/PubMed CentralArticle
ORCID:
AuthorORCID
Antoshechkin, Igor0000-0002-9934-3040
Chan, Juancarlos0000-0002-7259-8107
Harris, Todd W.0000-0003-3406-163X
Lee, Raymond0000-0002-8151-7479
Nakamura, Cecilia0000-0002-4689-7314
Schwarz, Erich M.0000-0003-3151-4381
Van Auken, Kimberly0000-0002-1706-4196
Sternberg, Paul W.0000-0002-7699-0173
Additional Information:© 2006 The Author(s) This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. Received September 14, 2006. Revised October 3, 2006. Accepted October 4, 2006. Nucleic Acids Research Advance Access published online on November 11, 2006 P.W.S. is an investigator with the Howard Hughes Medical Institute. WormBase is supported by grant P41-HG02223 from the US National Human Genome Research Institute and by the British Medical Research Council. Funding to pay the Open Access publication charges for this article was provided by grant P41-HG02223 from the US National Human Genome Research Institute. Conflict of interest statement. None declared. Supplementary Data are available at NAR Online.
Issue or Number:Databa
PubMed Central ID:PMC1669750
Record Number:CaltechAUTHORS:BIEnar06advacc
Persistent URL:https://resolver.caltech.edu/CaltechAUTHORS:BIEnar06advacc
Alternative URL:http://dx.doi.org/10.1093/nar/gkl818
Usage Policy:No commercial reproduction, distribution, display or performance rights in this work are provided.
ID Code:6044
Collection:CaltechAUTHORS
Deposited By: Archive Administrator
Deposited On:15 Nov 2006
Last Modified:29 Oct 2019 19:40

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