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Cation–π interactions: computational analyses of the aromatic box motif and the fluorination strategy for experimental evaluation

Davis, Matthew R. and Dougherty, Dennis A. (2015) Cation–π interactions: computational analyses of the aromatic box motif and the fluorination strategy for experimental evaluation. Physical Chemistry Chemical Physics, 17 (43). pp. 29262-29270. ISSN 1463-9076. PMCID PMC4627595. https://resolver.caltech.edu/CaltechAUTHORS:20151016-133016920

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Abstract

Cation–π interactions are common in biological systems, and many structural studies have revealed the aromatic box as a common motif. With the aim of understanding the nature of the aromatic box, several computational methods were evaluated for their ability to reproduce experimental cation–π binding energies. We find the DFT method M06 with the 6-31G(d,p) basis set performs best of several methods tested. The binding of benzene to a number of different cations (sodium, potassium, ammonium, tetramethylammonium, and guanidinium) was studied. In addition, the binding of the organic cations NH_4+ and NMe_4+ to ab initio generated aromatic boxes as well as examples of aromatic boxes from protein crystal structures were investigated. These data, along with a study of the distance dependence of the cation–π interaction, indicate that multiple aromatic residues can meaningfully contribute to cation binding, even with displacements of more than an angstrom from the optimal cation–π interaction. Progressive fluorination of benzene and indole was studied as well, and binding energies obtained were used to reaffirm the validity of the “fluorination strategy” to study cation–π interactions in vivo.


Item Type:Article
Related URLs:
URLURL TypeDescription
https://doi.org/10.1039/C5CP04668HDOIArticle
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4627595PubMed CentralArticle
ORCID:
AuthorORCID
Davis, Matthew R.0000-0002-6374-4555
Dougherty, Dennis A.0000-0003-1464-2461
Additional Information:© 2015 the Owner Societies. Received 6th August 2015; Accepted 8th October 2015; First published online 08 Oct 2015. We thank the NIH (NS 34407) for support of this work.
Funders:
Funding AgencyGrant Number
NIHNS 34407
Issue or Number:43
PubMed Central ID:PMC4627595
Record Number:CaltechAUTHORS:20151016-133016920
Persistent URL:https://resolver.caltech.edu/CaltechAUTHORS:20151016-133016920
Usage Policy:No commercial reproduction, distribution, display or performance rights in this work are provided.
ID Code:61217
Collection:CaltechAUTHORS
Deposited By: Tony Diaz
Deposited On:16 Oct 2015 21:28
Last Modified:24 Apr 2020 17:23

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