Tenneti, Srikanth V. and Vaidyanathan, P. P. (2016) Detecting tandem repeats in DNA using Ramanujan Filter Bank. In: 2016 IEEE International Symposium on Circuits and Systems (ISCAS). IEEE , Piscataway, NJ, pp. 21-24. ISBN 978-1-4799-5341-7. http://resolver.caltech.edu/CaltechAUTHORS:20160823-082935859
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Abstract
Tandem repeats are periodic segments in the DNA. They play an important role in forensics, tracing population evolution, genetic disorders and so on. Locating them in long DNA sequences is the problem addressed in this paper. A new technique is presented, based on the recently proposed Ramanujan Filter Bank (RFB). The RFB was shown to offer several advantages over the traditional period estimation techniques in DSP, such as those based on spectral estimation (STFT etc.). It involves simple integer operations, and detects several new repeats that could not be identified by popular existing techniques.1 Project Website: see [16].
| Item Type: | Book Section | |||||||||
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| Additional Information: | © 2016 IEEE. This work was supported in parts by the ONR grant N00014-15-1-2118, and the Information Science and Technology (IST) initiative of Caltech. | |||||||||
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| Subject Keywords: | Tandem Repeats in DNA, microsatellites, Ramanujan Filter Bank, Ramanujan Sums, Tandem Repeat Finder | |||||||||
| Record Number: | CaltechAUTHORS:20160823-082935859 | |||||||||
| Persistent URL: | http://resolver.caltech.edu/CaltechAUTHORS:20160823-082935859 | |||||||||
| Official Citation: | S. V. Tenneti and P. P. Vaidyanathan, "Detecting tandem repeats in DNA using Ramanujan Filter Bank," 2016 IEEE International Symposium on Circuits and Systems (ISCAS), Montreal, QC, Canada, 2016, pp. 21-24. doi: 10.1109/ISCAS.2016.7527160 | |||||||||
| Usage Policy: | No commercial reproduction, distribution, display or performance rights in this work are provided. | |||||||||
| ID Code: | 69835 | |||||||||
| Collection: | CaltechAUTHORS | |||||||||
| Deposited By: | Tony Diaz | |||||||||
| Deposited On: | 23 Aug 2016 18:01 | |||||||||
| Last Modified: | 23 Aug 2016 18:01 |
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