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Detecting tandem repeats in DNA using Ramanujan Filter Bank

Tenneti, Srikanth V. and Vaidyanathan, P. P. (2016) Detecting tandem repeats in DNA using Ramanujan Filter Bank. In: 2016 IEEE International Symposium on Circuits and Systems (ISCAS). IEEE , Piscataway, NJ, pp. 21-24. ISBN 978-1-4799-5341-7. http://resolver.caltech.edu/CaltechAUTHORS:20160823-082935859

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Abstract

Tandem repeats are periodic segments in the DNA. They play an important role in forensics, tracing population evolution, genetic disorders and so on. Locating them in long DNA sequences is the problem addressed in this paper. A new technique is presented, based on the recently proposed Ramanujan Filter Bank (RFB). The RFB was shown to offer several advantages over the traditional period estimation techniques in DSP, such as those based on spectral estimation (STFT etc.). It involves simple integer operations, and detects several new repeats that could not be identified by popular existing techniques.1 Project Website: see [16].


Item Type:Book Section
Related URLs:
URLURL TypeDescription
http://dx.doi.org/10.1109/ISCAS.2016.7527160 DOIArticle
http://ieeexplore.ieee.org/document/7527160/PublisherArticle
Additional Information:© 2016 IEEE. This work was supported in parts by the ONR grant N00014-15-1-2118, and the Information Science and Technology (IST) initiative of Caltech.
Funders:
Funding AgencyGrant Number
Office of Naval Research (ONR)N00014-15-1-2118
Caltech Information Science and Technology (IST) InitiativeUNSPECIFIED
Subject Keywords:Tandem Repeats in DNA, microsatellites, Ramanujan Filter Bank, Ramanujan Sums, Tandem Repeat Finder
Record Number:CaltechAUTHORS:20160823-082935859
Persistent URL:http://resolver.caltech.edu/CaltechAUTHORS:20160823-082935859
Official Citation:S. V. Tenneti and P. P. Vaidyanathan, "Detecting tandem repeats in DNA using Ramanujan Filter Bank," 2016 IEEE International Symposium on Circuits and Systems (ISCAS), Montreal, QC, Canada, 2016, pp. 21-24. doi: 10.1109/ISCAS.2016.7527160
Usage Policy:No commercial reproduction, distribution, display or performance rights in this work are provided.
ID Code:69835
Collection:CaltechAUTHORS
Deposited By: Tony Diaz
Deposited On:23 Aug 2016 18:01
Last Modified:23 Aug 2016 18:01

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