Alexandersson, Marina and Bray, Nicolas and Pachter, Lior (2005) Pair hidden Markov models. In: Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics. Wiley , New York, NY, Art. No. 4:4.2:17. ISBN 9780470011539. https://resolver.caltech.edu/CaltechAUTHORS:20170308-113640795
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Abstract
We describe pair hidden Markov models, with an emphasis on their relationship to evolutionary models and hidden Markov models. We then explain the statistical interpretation of alignment with pair hidden Markov models, and highlight connections to the Needleman–Wunsch algorithm and other dynamic programming–based alignment algorithms.
| Item Type: | Book Section | |||||||||
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| Additional Information: | © 2005 John Wiley & Sons. | |||||||||
| Subject Keywords: | alignment; dynamic programming; evolutionary models; graphical models; pair hidden Markov models | |||||||||
| Record Number: | CaltechAUTHORS:20170308-113640795 | |||||||||
| Persistent URL: | https://resolver.caltech.edu/CaltechAUTHORS:20170308-113640795 | |||||||||
| Official Citation: | Alexandersson, M., Bray, N. and Pachter, L. 2005. Pair hidden Markov models. Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics. 4:4.2:17. | |||||||||
| Usage Policy: | No commercial reproduction, distribution, display or performance rights in this work are provided. | |||||||||
| ID Code: | 74899 | |||||||||
| Collection: | CaltechAUTHORS | |||||||||
| Deposited By: | George Porter | |||||||||
| Deposited On: | 08 Mar 2017 20:39 | |||||||||
| Last Modified: | 24 Feb 2020 10:30 |
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