Cawley, Simon and Pachter, Lior and Alexandersson, Marina (2003) SLAM web server for comparative gene finding and alignment. Nucleic Acids Research, 31 (13). pp. 3507-3509. ISSN 1362-4962. PMCID PMC168989. doi:10.1093/nar/gkg583. https://resolver.caltech.edu/CaltechAUTHORS:20170308-152527629
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Abstract
SLAM is a program that simultaneously aligns and annotates pairs of homologous sequences. The SLAM web server integrates SLAM with repeat masking tools and the AVID alignment program to allow for rapid alignment and gene prediction in user submitted sequences. Along with annotations and alignments for the submitted sequences, users obtain a list of predicted conserved non-coding sequences (and their associated alignments). The web site also links to whole genome annotations of the human, mouse and rat genomes produced with the SLAM program. The server can be accessed at http://bio.math.berkeley.edu/slam.
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| Additional Information: | © 2003 Oxford University Press. Received February 14, 2003; Revised and Accepted April 3, 2003. We thank Nicolas Bray for helping to set up the web server site. Colin Dewey has helped in performing and analyzing the SLAM whole genome runs. L.P. and S.C. are partially supported by a grant from the NIH (R01-HG02362-01). M.A. is supported by the Swedish Foundation for Strategic Research. | ||||||||||||
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| Issue or Number: | 13 | ||||||||||||
| PubMed Central ID: | PMC168989 | ||||||||||||
| DOI: | 10.1093/nar/gkg583 | ||||||||||||
| Record Number: | CaltechAUTHORS:20170308-152527629 | ||||||||||||
| Persistent URL: | https://resolver.caltech.edu/CaltechAUTHORS:20170308-152527629 | ||||||||||||
| Official Citation: | Simon Cawley, Lior Pachter, Marina Alexandersson; SLAM web server for comparative gene finding and alignment. Nucleic Acids Res 2003; 31 (13): 3507-3509. doi: 10.1093/nar/gkg583 | ||||||||||||
| Usage Policy: | No commercial reproduction, distribution, display or performance rights in this work are provided. | ||||||||||||
| ID Code: | 74934 | ||||||||||||
| Collection: | CaltechAUTHORS | ||||||||||||
| Deposited By: | George Porter | ||||||||||||
| Deposited On: | 09 Mar 2017 15:41 | ||||||||||||
| Last Modified: | 15 Nov 2021 16:29 |
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