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SLAM web server for comparative gene finding and alignment

Cawley, Simon and Pachter, Lior and Alexandersson, Marina (2003) SLAM web server for comparative gene finding and alignment. Nucleic Acids Research, 31 (13). pp. 3507-3509. ISSN 1362-4962. PMCID PMC168989. https://resolver.caltech.edu/CaltechAUTHORS:20170308-152527629

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Abstract

SLAM is a program that simultaneously aligns and annotates pairs of homologous sequences. The SLAM web server integrates SLAM with repeat masking tools and the AVID alignment program to allow for rapid alignment and gene prediction in user submitted sequences. Along with annotations and alignments for the submitted sequences, users obtain a list of predicted conserved non-coding sequences (and their associated alignments). The web site also links to whole genome annotations of the human, mouse and rat genomes produced with the SLAM program. The server can be accessed at http://bio.math.berkeley.edu/slam.


Item Type:Article
Related URLs:
URLURL TypeDescription
https://doi.org/10.1093/nar/gkg583DOIArticle
https://academic.oup.com/nar/article/31/13/3507/2904205/SLAM-web-server-for-comparative-gene-finding-andPublisherArticle
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC168989/PubMed CentralArticle
ORCID:
AuthorORCID
Pachter, Lior0000-0002-9164-6231
Additional Information:© 2003 Oxford University Press. Received February 14, 2003; Revised and Accepted April 3, 2003. We thank Nicolas Bray for helping to set up the web server site. Colin Dewey has helped in performing and analyzing the SLAM whole genome runs. L.P. and S.C. are partially supported by a grant from the NIH (R01-HG02362-01). M.A. is supported by the Swedish Foundation for Strategic Research.
Funders:
Funding AgencyGrant Number
NIHR01-HG02362-01
Swedish Foundation for Strategic ResearchUNSPECIFIED
Issue or Number:13
PubMed Central ID:PMC168989
Record Number:CaltechAUTHORS:20170308-152527629
Persistent URL:https://resolver.caltech.edu/CaltechAUTHORS:20170308-152527629
Official Citation:Simon Cawley, Lior Pachter, Marina Alexandersson; SLAM web server for comparative gene finding and alignment. Nucleic Acids Res 2003; 31 (13): 3507-3509. doi: 10.1093/nar/gkg583
Usage Policy:No commercial reproduction, distribution, display or performance rights in this work are provided.
ID Code:74934
Collection:CaltechAUTHORS
Deposited By: George Porter
Deposited On:09 Mar 2017 15:41
Last Modified:24 Feb 2020 10:30

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