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DNA-Encoded Antibody Libraries: A Unified Platform for Multiplexed Cell Sorting and Detection of Genes and Proteins

Bailey, Ryan C. and Kwong, Gabriel A. and Radu, Caius G. and Witte, Owen N. and Heath, James R. (2007) DNA-Encoded Antibody Libraries: A Unified Platform for Multiplexed Cell Sorting and Detection of Genes and Proteins. Journal of the American Chemical Society, 129 (7). pp. 1959-1967. ISSN 0002-7863. PMCID PMC3677962. https://resolver.caltech.edu/CaltechAUTHORS:20170424-134958078

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Abstract

Whether for pathological examination or for fundamental biology studies, different classes of biomaterials and biomolecules are each measured from a different region of a typically heterogeneous tissue sample, thus introducing unavoidable sources of noise that are hard to quantitate. We describe the method of DNA-encoded antibody libraries (DEAL) for spatially multiplexed detection of ssDNAs and proteins as well as for cell sorting, all on the same diagnostic platform. DEAL is based upon the coupling of ssDNA oligomers onto antibodies which are then combined with the biological sample of interest. Spotted DNA arrays, which are found to inhibit biofouling, are utilized to spatially stratify the biomolecules or cells of interest. We demonstrate the DEAL technique for (1) the rapid detection of multiple proteins within a single microfluidic channel, and, with the additional step of electroless amplification of gold-nanoparticle labeled secondary antibodies, we establish a detection limit of 10 fM for the protein IL-2, 150 times more sensitive than the analogue ELISA; (2) the multiplexed, on-chip sorting of both immortalized cell lines and primary immune cells with an efficiency that exceeds surface-confined panning approaches; and (3) the co-detection of ssDNAs, proteins, and cell populations on the same platform.


Item Type:Article
Related URLs:
URLURL TypeDescription
http://dx.doi.org/10.1021/ja065930iDOIArticle
http://pubs.acs.org/doi/abs/10.1021/ja065930iPublisherArticle
http://pubs.acs.org/doi/suppl/10.1021/ja065930iPublisherSupporting Information
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3677962PubMed CentralArticle
ORCID:
AuthorORCID
Witte, Owen N.0000-0003-4461-4533
Heath, James R.0000-0001-5356-4385
Additional Information:© 2007 American Chemical Society. Received August 15, 2006. Publication Date (Web): January 30, 2007. The authors thank Leroy Hood, Paul Mischel, and Toni Ribas for helpful discussions. We also thank Bruz Marzolf at the Institute for Systems Biology (Seattle, WA) for printing DNA microarrays and Mireille Riedinger at UCLA for outstanding technical assistance with primary cell purifications. The VL-3 T cells were a kind gift from Dr. Stephen Smale at UCLA. We thank Harry Choi and Suvir Venkataraman in the Pierce group at Caltech for their help in generating the orthogonal DNA sequences. This work was funded by the National Cancer Institute Grant No. 5U54 CA119347 (J.R.H., P.I.) and by the DOE-funded Institute for Molecular Medicine Laboratory. Owen Witte is an Investigator of the Howard Hughes Medical Institute.
Funders:
Funding AgencyGrant Number
NIH5U54 CA119347
Department of Energy (DOE)UNSPECIFIED
Howard Hughes Medical Institute (HHMI)UNSPECIFIED
National Cancer InstituteUNSPECIFIED
Issue or Number:7
PubMed Central ID:PMC3677962
Record Number:CaltechAUTHORS:20170424-134958078
Persistent URL:https://resolver.caltech.edu/CaltechAUTHORS:20170424-134958078
Official Citation:DNA-Encoded Antibody Libraries:  A Unified Platform for Multiplexed Cell Sorting and Detection of Genes and Proteins Ryan C. Bailey, Gabriel A. Kwong, Caius G. Radu, Owen N. Witte, and James R. Heath Journal of the American Chemical Society 2007 129 (7), 1959-1967 DOI: 10.1021/ja065930i
Usage Policy:No commercial reproduction, distribution, display or performance rights in this work are provided.
ID Code:76866
Collection:CaltechAUTHORS
Deposited By: Tony Diaz
Deposited On:24 Apr 2017 22:29
Last Modified:03 Oct 2019 17:50

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