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Phylogenetic and Protein Sequence Analysis of Bacterial Chemoreceptors

Ortega, Davi R. and Zhulin, Igor B. (2018) Phylogenetic and Protein Sequence Analysis of Bacterial Chemoreceptors. In: Bacterial Chemosensing. Methods in Molecular Biology. No.1729. Humana Press , New York, NY, pp. 373-385. ISBN 978-1-4939-7576-1. http://resolver.caltech.edu/CaltechAUTHORS:20180220-082758444

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Abstract

Identifying chemoreceptors in sequenced bacterial genomes, revealing their domain architecture, inferring their evolutionary relationships, and comparing them to chemoreceptors of known function become important steps in genome annotation and chemotaxis research. Here, we describe bioinformatics procedures that enable such analyses, using two closely related bacterial genomes as examples.


Item Type:Book Section
Related URLs:
URLURL TypeDescription
https://doi.org/10.1007/978-1-4939-7577-8_29DOIArticle
https://link.springer.com/protocol/10.1007%2F978-1-4939-7577-8_29PublisherArticle
ORCID:
AuthorORCID
Ortega, Davi R.0000-0002-8344-2335
Additional Information:© 2018 Springer Science+Business Media, LLC. First Online: 11 February 2018. This work was supported by NIH grant R35 GM122588 to D.R.O and R01 GM072285 to I.B.Z.
Funders:
Funding AgencyGrant Number
NIHR35 GM122588
NIHR01 GM072285
Subject Keywords:Chemotaxis; Chemoreceptors; Sequence analysis; Phylogenetic analysis; Protein domains; Rhizobia
Record Number:CaltechAUTHORS:20180220-082758444
Persistent URL:http://resolver.caltech.edu/CaltechAUTHORS:20180220-082758444
Usage Policy:No commercial reproduction, distribution, display or performance rights in this work are provided.
ID Code:84885
Collection:CaltechAUTHORS
Deposited By: Tony Diaz
Deposited On:22 Feb 2018 03:36
Last Modified:22 Feb 2018 03:36

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