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A brief history of COMBINE

Myers, Chris J. and Bader, Gary and Gleeson, Padraig and Golebiewski, Martin and Hucka, Michael and Le Novère, Nicolas and Nickerson, David P. and Schreiber, Falk and Waltemath, Dagmar (2017) A brief history of COMBINE. In: Proceedings of the 2017 Winter Simulation Conference. IEEE , Piscataway, NJ, pp. 884-895. ISBN 978-1-5386-3428-8. https://resolver.caltech.edu/CaltechAUTHORS:20180516-143900255

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Abstract

Standards for data exchange are critical to the development of any field. They enable researchers and practitioners to transport information reliably, to apply a variety of tools to their problems, and to reproduce scientific results. Over the past two decades, a range of standards have been developed to facilitate the exchange and reuse of information in the domain of representation and modeling of biological systems. These standards are complementary, so the interactions between their developers increased over time. By the end of the last decade, the community of researchers decided that more interoperability is required between the standards, and that common development is needed to make better use of effort, time, and money devoted to this activity. The COmputational MOdeling in Biology NEtwork (COMBINE) was created to enable the sharing of resources, tools, and other infrastructure. This paper provides a brief history of this endeavor and the challenges that remain.


Item Type:Book Section
Related URLs:
URLURL TypeDescription
https://doi.org/10.1109/WSC.2017.8247840DOIArticle
ORCID:
AuthorORCID
Hucka, Michael0000-0001-9105-5960
Le Novère, Nicolas0000-0002-6309-7327
Waltemath, Dagmar0000-0002-5886-5563
Additional Information:© 2017 IEEE. CM is supported by the National Science Foundation under Grant No. CCF-1218095 and DBI-1356041. MH is supported by NIGMS award R01070923. GDB is supported by NHGRI award U41HG006623. NLN is supported by BBSRC grant BB/P013384/1. DPN is supported by the Aotearoa Foundation and NIGMS award P50-GM094503. MG is supported by the German Federal Ministry of Education and Research (BMBF) through the Liver Systems Medicine (LiSyM) project and was also supported by the German Federal Ministry for Economic Affairs and Energy (BMWi) through the NormSys project (FKZ 01FS14019). Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the NSF or our other funding agencies.
Funders:
Funding AgencyGrant Number
NSFCCF-1218095
NSFDBI-1356041
NIHR01070923
NIHU41HG006623
Biotechnology and Biological Sciences Research Council (BBSRC)BB/P013384/1
Aotearoa FoundationUNSPECIFIED
NIHP50-GM094503
Bundesministerium für Bildung und Forschung (BMBF)UNSPECIFIED
Bundesministerium für Wirtschaft und Energie (BMWi)FKZ 01FS14019
National Human Genome Research InstituteUNSPECIFIED
Record Number:CaltechAUTHORS:20180516-143900255
Persistent URL:https://resolver.caltech.edu/CaltechAUTHORS:20180516-143900255
Official Citation:C. J. Myers et al., "A brief history of COMBINE," 2017 Winter Simulation Conference (WSC), Las Vegas, NV, 2017, pp. 884-895. doi: 10.1109/WSC.2017.8247840. URL: http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=8247840&isnumber=8247314
Usage Policy:No commercial reproduction, distribution, display or performance rights in this work are provided.
ID Code:86428
Collection:CaltechAUTHORS
Deposited By: Tony Diaz
Deposited On:18 May 2018 17:21
Last Modified:03 Oct 2019 19:43

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