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A Reinvestigation by Circular Dichroism and NMR:  Ruthenium(II) and Rhodium(III) Metallointercalators Do Not Bind Cooperatively to DNA

Franklin, Sonya J. and Treadway, Christopher R. and Barton, Jacqueline K. (1998) A Reinvestigation by Circular Dichroism and NMR:  Ruthenium(II) and Rhodium(III) Metallointercalators Do Not Bind Cooperatively to DNA. Inorganic Chemistry, 37 (20). pp. 5198-5210. ISSN 0020-1669. http://resolver.caltech.edu/CaltechAUTHORS:20180524-163555321

[img] PDF (Figures of CD spectra of Δ-Rh and Λ-Rh in the absence and presence of [poly(dA-dT)]_2 and CD spectra taken from ref 13; expanded regions (TMe and H2‘,2‘‘ vs aromatic) for D1/D2, Rh‘+DNA, Ru+DNA, and Rh‘+Ru+DNA; and full 2D-NOESY spectra in ...) - Supplemental Material
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Abstract

Fast, long-range electron transfer mediated by the DNA helix has been questioned by some researchers citing the possible clustering, or cooperative association, of noncovalently bound donors and acceptors on DNA. A systematic investigation of binding to DNA by the metallointercalators Δ-bis(1,10-phenanthroline)(dipyridophenazine)ruthenium(II) (Ru), Δ-bis(9,10-phenanthrenequinone diimine)(2,2‘-bipyridine)rhodium(III) (Rh), and Δ-bis(9, 10-phenanthrenequinone diimine)(5-(amidoglutaryl)-1,10-phenanthroline)rhodium(III) (Rh‘) using circular dichroism and NMR has shown no evidence for their cooperative clustering on a DNA helix. Circular dichroism (CD) studies of Ru and Rh in [poly(dA-dT)]_2, mixed-sequence calf thymus DNA, and [poly(dG-dC)]_2 as a function of loading indicate that the largest perturbations to the CD signal occur upon initial addition of DNA, with no subsequent systematic variation. Difference spectra of the two metallointercalators bound together versus separately are virtually indistinguishable at high and low loadings. Two-dimensional 1H NMR studies of Ru and Rh‘ binding to a DNA decamer duplex in 90:10 H_2O/D_2O have also been conducted. A more direct structural picture of the site occupancies of these complexes on a DNA helix emerges through examination of the dramatic upfield shifts of the imino protons of the DNA bases that occur upon intercalation. These studies reveal that with both complexes present, each intercalates specifically toward either end of the duplex, with a 4 base pair separation between them. In contrast, the complexes individually bound to the duplex showed low site-selectivity, and preferred more central sites. If anything, these data indicate anti-cooperative binding to the helix, which might be expected based upon electrostatic considerations. Time-resolved measurements of the Ru(II) luminescence reveal substantial subnanosecond quenching (approximately 60%) in the presence of Rh(III). Based upon the NMR results, this quenching must proceed over a distance >14 Å via electron transfer through the DNA π-stack. These experiments with noncovalently bound intercalators are fully consistent with earlier studies of electron transfer through DNA utilizing covalently bound donors and acceptors and definitively prove clustering cannot be responsible for the fast photoinduced electron transfer between metallointercalators mediated by the DNA double helix.


Item Type:Article
Related URLs:
URLURL TypeDescription
https://dx.doi.org/10.1021/ic9801948DOIArticle
https://pubs.acs.org/doi/suppl/10.1021/ic9801948PublisherSupporting Information
ORCID:
AuthorORCID
Barton, Jacqueline K.0000-0001-9883-1600
Additional Information:© 1998 American Chemical Society. Received February 20, 1998. We are grateful to the NIH (GM33309) for their financial support. S.J.F. also thanks NIH for an NRSA postdoctoral fellowship. We thank R. E. Holmlin, B. P. Hudson, and E. D. A. Stemp for valuable discussions and technical assistance. In addition, we thank the Beckman Institute Laser Resource Center for technical support.
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Funding AgencyGrant Number
NIHGM33309
NIH Postdoctoral FellowshipUNSPECIFIED
Record Number:CaltechAUTHORS:20180524-163555321
Persistent URL:http://resolver.caltech.edu/CaltechAUTHORS:20180524-163555321
Official Citation:A Reinvestigation by Circular Dichroism and NMR:  Ruthenium(II) and Rhodium(III) Metallointercalators Do Not Bind Cooperatively to DNA Sonya J. Franklin, Christopher R. Treadway, and Jacqueline K. Barton Inorganic Chemistry 1998 37 (20), 5198-5210 DOI: 10.1021/ic9801948
Usage Policy:No commercial reproduction, distribution, display or performance rights in this work are provided.
ID Code:86610
Collection:CaltechAUTHORS
Deposited By: George Porter
Deposited On:25 May 2018 14:28
Last Modified:25 May 2018 14:28

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