A Caltech Library Service

A systems approach to morphogenesis in Arabidopsis thaliana: I. AGNS database

Omelyanchuk, N. A. and Mironova, V. V. and Zalevsky, E. M. and Shamov, I. S. and Poplavsky, A. S. and Podkolodny, N. L. and Ponomaryov, D. K. and Nikolaev, S. V. and Mjolsness, E. D. and Meyerowitz, E. M. and Kolchanov, N. A. (2006) A systems approach to morphogenesis in Arabidopsis thaliana: I. AGNS database. Biophysics, 51 (S1). pp. 75-82. ISSN 0006-3509. doi:10.1134/s0006350906070165.

Full text is not posted in this repository. Consult Related URLs below.

Use this Persistent URL to link to this item:


In systems biology, study of a complex and multicomponent system, such as morphogenesis, comprises accumulation of data on morphogenetic processes in databases, classification and logical analysis of this information, and computer simulation of the processes in question using the data accumulated and the results of their analysis. This paper describes realization of the first steps in a systems study of morphogenesis (annotating research papers, compiling information in a database, data systematization, and their logical analysis) by the example of Arabidopsis thaliana, a model object in plant molecular biology. The database AGNS (Arabidopsis GeneNet Supplementary; contains the experimentally confirmed information from published papers on specific features of gene expression and phenotypes of wild-type, mutant, and transgenic A. thaliana plants. AGNS queries and logical data analysis with the aid of specially developed software makes it possible to model various morphogenetic processes from gene expression to functioning of gene networks and their contribution to the development of certain traits.

Item Type:Article
Related URLs:
URLURL TypeDescription ReadCube access
Meyerowitz, E. M.0000-0003-4798-5153
Additional Information:© Pleiades Publishing, Ltd. 2006. The work was supported by the Federal Agency for Science and Innovations (state contract no. 02.467.11.1005), Russian Foundation for Basic Research (05-07-98012), Russian Academy of Sciences (10104-34/P-18/155-270/1105-06-001/28/2006-1 and the RAS Presidium program on Molecular and Cell Biology), Siberian Division of RAS (integration project no. 115), and US National Science Foundation (FIBR EF-0330786).
Funding AgencyGrant Number
Federal Agency for Science and Innovations (Russia)02.467.11.1005
Russian Foundation for Basic Research05-07-98012
Russian Academy of Sciences10104-34/P-18/155-270/1105-06-001/28/2006-1
Russian Academy of Sciences, Siberian Division115
Subject Keywords:morphogenesis, plant development, database, ontology
Issue or Number:S1
Record Number:CaltechAUTHORS:20190909-133030018
Persistent URL:
Official Citation:Omelyanchuk, N.A., Mironova, V.V., Zalevsky, E.M. et al. BIOPHYSICS (2006) 51(Suppl 1): 75.
Usage Policy:No commercial reproduction, distribution, display or performance rights in this work are provided.
ID Code:98518
Deposited By: George Porter
Deposited On:09 Sep 2019 20:56
Last Modified:16 Nov 2021 17:39

Repository Staff Only: item control page