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Journal Pre-proof
Looking on the Horizon; Potential and Unique Approaches to
Developing Radiation Countermeasures for Deep Space Travel
Rihana S. Bokhari , Afshin Beheshti , Sarah E. Blutt ,
Dawn E. Bowles , David Brenner , Robert Britton ,
Lawrence Bronk , Xu Cao , Anushree Chatterjee , Delisa E. Clay ,
Colleen Courtney , Donald T. Fox , M. Waleed Gaber ,
Sharon Gerecht , Peter Grabham , David Grosshans ,
Fada Guan , Erin A. Jezuit , David G. Kirsch , Zhandong Liu ,
Mirjana Maletic-Savatic , Kyle M. Miller , Ruth A. Montague ,
Prashant Nagpal , Sivan Osenberg , Luke Parkitny ,
Niles A. Pierce , Christopher Porada , Susan M. Rosenberg ,
Paul Sargunas , Sadhana Sharma , Jamie Spangler ,
Daniel Naveed Tavakol , Dilip Thomas ,
Gordana Vunjak-Novakovic , Chunbo Wang , Luke Whitcomb ,
Damian W. Young , Dorit Donoviel
PII:
S2214-5524(22)00060-8
DOI:
https://doi.org/10.1016/j.lssr.2022.08.003
Reference:
LSSR 404
To appear in:
Life Sciences in Space Research
Received date:
8 March 2022
Revised date:
29 July 2022
Accepted date:
4 August 2022
Please cite this article as: Rihana S. Bokhari , Afshin Beheshti , Sarah E. Blutt , Dawn E. Bowles ,
David Brenner ,
Robert Britton ,
Lawrence Bronk ,
Xu Cao ,
Anushree Chatterjee ,
Delisa E. Clay ,
Colleen Courtney ,
Donald T. Fox ,
M. Waleed Gaber ,
Sharon Gerecht ,
Peter Grabham ,
David Grosshans ,
Fada Guan ,
Erin A. Jezuit ,
David G. Kirsch ,
Zhandong Liu , Mirjana Maletic-Savatic , Kyle M. Miller , Ruth A. Montague , Prashant Nagpal ,
Sivan Osenberg , Luke Parkitny , Niles A. Pierce , Christopher Porada , Susan M. Rosenberg ,
Paul Sargunas , Sadhana Sharma , Jamie Spangler , Daniel Naveed Tavakol , Dilip Thomas ,
Gordana Vunjak-Novakovic , Chunbo Wang , Luke Whitcomb , Damian W. Young , Dorit Donoviel ,
Looking on the Horizon; Potential and Unique Approaches to Developing Radiation Coun-
termeasures for Deep Space Travel,
Life
Sciences
in
Space
Research
(2022), doi:
https://doi.org/10.1016/j.lssr.2022.08.003
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2022 Published by Elsevier B.V. on behalf of The Committee on Space Research (COSPAR).
1
Title:
Looking on the Horizon;
Potential
and Unique
Approaches to
Developing
Radiation
Countermeasures for
Deep
Space Travel
Rihana S. Bokhari
1
, Afshin Beheshti
2,3
,
Sarah E. Blutt
4,5
,
D
awn
E.
Bowles
6
,
David Brenner
7
,
Robert Britton
4
L
awrence
Bronk
8
,
Xu Cao
9
, A
nushree Chatterjee
10
,1
1
,
Delisa E. Clay
1
2
,
Colleen Courtney
10
,
Donald
T.
Fox
1
2
,
M. Waleed Gaber
1
3
,
Sharon Gerecht
1
4
,1
5
,
Peter Grabham
1
6
,
D
avid
Grosshans
8
, F
ada
Guan
8
,
Erin A.
Jezuit
1
2
, David G. Kirsch
1
2
,
Z
handong
Liu
1
3
, 1
7
,
Mirjana Maletic
-
Savatic
1
3
, 1
7
,
Kyle M. Miller
1
8
,
Ruth A. Montague
1
2
, Prashant Nagpal
10
,
S
ivan
Osenberg
1
3
, 1
7
,
L
uke
Parkitny
1
3
, 1
7
, N
iles A. Pierce
1
9
,20
,21
, Christopher Porada
2
2
, Susan M. Rosenberg
23
,24
,25
,26
,
Paul Sargunas
1
4
,
Sadhana Sharma
10
,
Jamie Spangler
1
4
,
Daniel
Naveed Tavakol
7
,
Dilip Thomas
9
,
Gordana Vunjak
-
Novakovic
7
,
Chunbo
Wang
6
,
Luke Whitcomb
2
7
,
D
amian
W. Young
2
8
,
Dorit
Donoviel
2
9
,
30
1
NASA Research and Education Support Services,
Arlington, VA 22202, USA,
2
KBR, Space Biosciences Division, NASA Ames Research Center, Moffett Field, CA, 94035, USA,
3
Stanley Center for Psychiatric Research, Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA,
4
Department of Molecular Virol
ogy and Microbiology, Baylor College of Medicine, Houston,
TX
77030, USA,
5
Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston,
TX
77030, USA
,
6
D
ivision of Surgical Sciences, D
epartment of Surgery, Duke University, Durham NC,
USA,
7
Columbia University, New York, NY 10027, USA
8
The
University of Texas MD Anderson Cancer Center, 1515 Holcombe Boulevard, Houston, TX 77030
, USA,
9
Stanford University School of Medicine, Stanford, CA 94305, USA,
10
Sachi Bioworks,
Louisville, CO 8002
7
,
USA,
1
1
University of Colorado Boulder, Boulder, CO 80303,
USA,
1
2
Department of
Pharmacology and Cancer
Biology, Duke University School of Medicine, Durham, NC 27710, USA,
1
3
Department of Pediatrics, Baylor College of Medicine, One Baylor Plaza, Houston,
TX 77030, USA,
1
4
Chemical and Biomolecular Engineering and Biomedical Engineering, Johns Hopkins University,
Baltimore, MD 21218 USA,
1
5
Biomedical Engineering, Duke University,
Durham, NC 27708, USA,
1
6
Center for Radiological Research, College of Physicia
ns and Surgeons, Columbia University, New York,
NY 10027
USA,
1
7
Jan and Dan Duncan Neurological Research Institute, 1250 Moursund St. Houston, TX 77030, USA,
1
8
Department of Molecular Biosciences, The U
niversity of Texas, Austin, TX 787
12
, USA,
1
9
Division
of Biology & Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA,
20
Division of Engineering & Applied Science, California Institute of Technology, Pasadena, CA 91125, USA,
2
1
Weatherall Institute of Molecular Medicine,
University of Oxford, Oxford OX3 9DS, UK,
2
2
Wake Forest Institute for Regenerative Medicine, Fetal Research and Therapy Program Wake Forest School of Medicine
, Winston
-
Salem, NC 27157, USA,
2
3
Department of Molecular and Human Genetics, Baylor College of Me
dicine, 1 Baylor Plaza, Houston, TX, 77303, USA,
2
4
Dan L. Duncan Comprehensive Cancer Center, Baylor College of Medicine, 1 Baylor Plaza, Houston, TX, 77303, USA,
2
5
Department of Biochemistry and Molecular Biology, Baylor College of Medicine, 1 Baylor Plaza, Houston, TX, 77303, USA,
2
6
Department of Molecular Virology and Microbiology, Baylor College of Medicine, 1 Baylor Plaza, Houston, TX, 77303, USA,
2
7
Department of Environmental and Radiological Health Sciences, Colorado State University, Fort Collins,
CO
80523, USA,
2
8
Department of Pharmacology, Baylor College of Medicine, Houston,
TX
77030, USA
2
9
Translational Research Institute for Space Health,
Houston, TX 77030, USA
30
Center for Space Medicine, Baylor Colleg
e of Medicine, Houston, TX
77030
, USA;
donoviel@bcm.edu
.
Abstract
Future lunar missions and beyond will require new and innovative approaches to radiation
countermeasures. The Translational Research Institute for Space Health (TRISH)
is focused on
identifying and supporting unique approaches to reduce risks to human heal
th and
performance on future missions beyond low Earth orbit
. This paper will describe
three
funded
and
complementary
avenues
for
reduc
ing
the
risk to humans from
radiation exposure
experienced in deep space.
The first focus is on
identifying
new
therapeut
ic
targets to reduce
the damaging effects of radiation by focusing on
high throughput genetic screens in
accessible
,
sometimes called
lower
,
organism
model
s
. The second focus is to design innovative approaches
for countermeasure development with special at
tention to nucleotide
-
based
methodologies
that may constitute a more agile way to design therapeutics. The final focus is to develop new
and innovative ways to test radiation countermeasures
in a human model system
. While animal
studies continue to be bene
ficial in the study of space radiation, they can have imperfect
translation to humans. The use of three
-
dimensional (3D) complex in
vitro models
is a
promis
ing approach
to aid
the
develop
ment of
new countermeasures and personalized
assessments of radiation risks.
These three distinct and unique approaches complement
2
traditional space radiation efforts and should provide future space explorers with more options
to safeguard their short and long
-
te
rm health.
Key
-
Words
Space Radiation, 3D tissue, Organoid, Extremophile, Nucleotide
-
based Approaches, Radiation
Countermeasure
1.1
Background
Space radiation differs from
commonly encountered
forms of radiation
emitteed
by
diagnostic
and therapeutic
procedures
(X
-
rays and gamma
-
rays) because it comprise
s
a mixed field of
high
-
energy protons and nuclei components originating from either solar particle events (SPEs)
or galactic cosmic rays (GCR
), which are
made of
high atomic number and energy (
HZE
)
rad
iation
particles.
HZE radiation particles are part
icularly concerning because their track
structure, the particle’s energy deposition as
it
passes through a tissue, leaves significant
complex damage both along the track structure and from energetic electro
ns that are formed
due to
the particle’s interactions with the tissue
(1)
. The result of this damag
e in living tissues is
mutations
and
sometimes cell death.
Space radiation
exposure
(unless
from SPE
s
)
occurs at a
low dose rate,
of
approximately
0.5 mGy/day. The complex nature of GCR is attributable to its
composition of numerous particle species, making them
potentially
harmful even at low dose
rates.
The major GCR particle types include H (protons,
approximately
8
7
%), He (
approximately
1
2%
),
ab
out 2% positrons and electrons
,
and about 1% of HZE particles with broad energy
spectra of interest
(from
Li
to
Zn
)
primarily from ~10 MeV/n to 10,000 MeV/n
(2)
.
On the other
hand, SPEs are composed chiefly of protons and have a
broad
energy spectrum extending out
to a few hundred MeV.
On Earth, life is shielded from space radiation by the Earth’s magnetic
field.
Astronauts in low Earth orbit (LEO) have
partially
benefited from this protection,
al
though
their exposure is greater than th
ose on Earth
(3)
.
On future missions to the moon and Mars,
a
stronauts will experience prolonged exposure to
radiation at a low dose and low fluence
(4)
. Given this dose rate at the expected energies is not
replicable on Earth, the true health effects of space radiation remain largely unknown. Althou
gh
HZE particles represent only 1% of the GCR spectrum, they will likely contribute most of the
absorbed dose. Exposure to HZE particles may result in
significant
effects on
a
stronauts
;
thus
studying
the effects of such particles at total doses similar to
that of an entire mission
has been
prioritized
(5
-
9)
. However,
b
ecause
it is not feasible to deliver a realistic replication of GCR on
Earth at the dose rate and fluence expected in space,
and it is unethical to purposefully expose
humans to such radiation,
the human health and performance effects of
long
-
term exposure
to
GCR beyond LEO
remains unknown
.
Because of
the unique nature of space radiation and the
enormous engineering challenges associated with adequately shielding in spaceflight,
the
current plan is to depend on exposure limits and a reliance on the very lim
ited set of known
countermeasures that have shown promise in preventing damage from space radiation in
animal studies
(9)
. There is a need for
innovative countermeasure
development
approaches to
ensure safe space travel for astronauts on exploration class missions.
3
The current body of knowledge on radiation countermeasures is limited
(10)
.
The majority of
published studies on
ionizing
radiation
health
effects
in
humans,
are
not GCR relevant,
thereby
creating a challenge for
the applicability of traditional pharmacological
countermeasures
developed for terrestrial radiation to
the
space
context
. Rodent models have long served as an
acceptable option for studying
space
radiation effects,
with the assumption being that
much of
these results will translate to humans. Samples derived from astronauts
exposed to space
radiation
and rodent
s exposed to simulated space radiation
do
show similar responses in
triggering DNA damage response, oxidative stress, inflammation, and lip
id peroxidation
(11
-
13)
.
However, inbred rodent
models
are known to be more
radioresistant
than humans,
though this
can vary with strain,
and generally, animal models have been found to imperfectly translate to
human physiology
for
various
reasons
(14)
. For instance,
it is estimated that there is a
nearly
90%
failure rate
of
drug testing using
preclinical animal models, which is related to both efficacy
and safety problems when brought to clinical trials
(15
-
17)
.
Continuing to rely on
animal models
alone to understand the effects of space radiation on humans
does not provide a complete
picture
.
Hence, it is vital to
develop
innovative experimental approaches to bridge the
translational relevance of animal studies to human response.
Both adherent and non
-
adherent
human
cell cultures have been used to understand the cell
biology and disease mechanisms induced by radiation. However, monolayer cultures do not
mimic the cell
-
cell and cell
-
extracellular matrix (ECM) interactions.
In
vivo,
these interactions
are essential for
cellular functions such as differentiation, proliferation, and fate
-
associated
gene expression.
Because of
the lack of tissue
-
like architecture, monolayer cultures are not set
up to respond to nutrients or metabolic gradients
(18)
.
One alternative is human complex
microphysiological systems
that
have the potential for improved translatability as they are
developed with normal human cells. Recent advances in their complexity, longevity,
reproducibility, and recapitulation of
in
vivo
anatomical features and differentiation markers, as
well as physio
logical activities, promise whole organism translatability.
This paper discusses funded projects by the
Translational Research Institute for Space Health
(TRISH
) that
address novel
radiation countermeasure
development approaches
.
TRISH is a
NASA
-
funded in
stitute with a focus on disruptive, high
-
risk, high
-
reward research aimed at
pushing the field of human spaceflight forward in great leaps
as opposed to incremental steps
.
This
three
-
pronged
approach
by TRISH
focuses on advancement in radiation countermeasure
target identification, development
,
and testing.
One way in which TRISH is supporting
innovative work on this front is focusing on identifying new targets for radiation resistance by
studying
accessible
o
rganism
model
s
, someti
mes called lower organisms,
and
leveragi
ng
adaptations by other organisms,
extremophile
,
to increased radiation exposure. Another
strategy is the use of innovative
nucleotide
-
based
therapeutic methods to mitigate the impacts
of radiat
ion on human
s
. Finally, TRISH has supported work using three
-
dimensional
(3D)
complex
microphysiological systems
, which may prove to be not only more translatable to
humans but also advantageous for research in space.
With NASA planning missions beyond LEO
where there is the unprecedented possibility of testing countermeasures in an actual GCR, and
possibly SPE, environment, it becomes more crucial to identify innovative strategies for
radiation countermeasures that can be tested in these unique opportuniti
es.
4
2.1
High
-
Risk, High
-
Reward Approaches to the Identification of New Radiation
Countermeasure Targets
One arm of TRISH’s approach to new radiation countermeasure development is to fund
research that focuses on identifying
novel
targets
.
Extremophile
organisms, like
tardigrades,
have adapted to survive in extreme environments, including under conditions of increased
radiation exposure. Identifying the genes that make them resilient and validating that
they can
confer resistance is a reasonable approach
. However, extremophile organisms do not yet
lend
themselves to
genetic manipulation
that are the strengths of
accessible
organisms such as
bacteria, yeast, and fruit flies.
To circumvent this challenge, Dr. Donald Fox’s group successfully
developed a nove
l platform for identifying radiation
-
resistance genes from an extremophile,
the tardigrade
R. varieornatus
in a
host organism
(19)
.
The platform involves expressing
tardigrade genes in a
genetically accessible model organism, the fruit fly
Drosophila
melanogaster.
By u
sing this approach, 74 genes have been screened that are either unique to
tardigrades or are part of a str
ess response gene family thought to confer resistance to
environmental stressors in tardigrades. Candidate tardigrade transgenes that improve
Drosophila
survival following either low (X
-
ray) or high (
56
Fe ions) LET radiation have been
identified using this
approach.
These studies were the first to expose fruit flies to space
radiation.
Promising screen hits are being identified and tested in human cells for
their ability to
confer
radiation resistance.
The power of using
accessible
organisms such as
the common bacterium
Escherichia coli
has
been
demonstrated in a
screen for genes that promote and prevent endogenous cellular
damage when slightly overexpressed
.
By u
sing this approach,
Drs. Susan Rosenberg and Kyle
Miller
have
previously
identified
the b
acterial genes’
human homologs that
may
play a role in
cancer
(20)
.
To use this same method to identify novel targets
for space radiation
countermeasures,
E. coli
cells
were exposed to ionizing radiation to look for
overexpressed
genes that
confer resistance.
The screen was successful and
human homologs
were identified
and are currently
being tested
.
Many of these target
s are brand new and have never before
been identified as potential radiation countermeasures.
Both these approaches leverage
accessible
organisms that lend themselves to high
-
throughput
genetic screening and manipulation to expand the existing pool of radiation countermeasure
targets.
3.1
High
-
Risk, High
-
Reward Approaches to
Developing
Radiation Countermeasures
Today, most drugs on the
market have been developed using traditional drug discovery
approaches,
which
requir
e
decades of preclinical and clinical research and billions of dollars in
funding. The failure rate is so high that the market size has overshadowed the need in the
decisio
n to
move forward in drug development
.
B
ec
ause the space radiation market
is
negligible, there are no financial incentives to develop novel drugs to protect humans in space.
TRISH has invested in several
nucleotide
-
based approaches
because they are likely to be
5
developed faster and at a lower cost. The recent success of Luxturna, an adeno
-
associated viral
(A
A
V) vector
-
based gene therapy that cures an inherited form of blindness, invigorated the field
of nucleotide
-
based therapeutics
.
Another recent success,
RNA
-
based vaccines
,
has
proven
invaluable in fighting the
recent COVID
-
19 pandemic
due to, amongst other benefits, the speed
by which they could be developed
.
TRISH has funded several
programs
aimed at improving
faster, lower cost
nucleotide
-
based therapeutic approaches for
radiation countermeasures.
Dr. Dawn Bowles
explores
the use of
gene therapy as a method for delivering a p
rophylactic
radiation
protectant
. The group
is optimizing gene
-
carrying
AAV
vectors for
nucleotide
-
based
radiation countermeasure delivery and safety.
There are many advantages of using the non
-
pathogenic AAV in gene therapy applications; however, from the NASA perspective perhaps the
most important advantage is that vectors based on AAV conf
er sustained expression (up to
years) of therapeutic nucleic acids in target tissues
(21)
. Packaging a genetic cargo in this type
of delivery vehicle
could be used as
a prophylactic
and initiated well in advance of the mission
and thus radiation exposure.
This
approach
would also
obviate
the need to
bring,
store
, and
continuously administer
pharmaceutical agent during
habitable volume
-
limited deep space
missions. The Bowles group focused
on developing
a therapeutic for GCR induced
cardiovascular dysfunction packaged in
a cardiac enhanced AAV capsid
(22, 23)
.
Dr. Niles Pierce focuses on
dynamic RNA nanotechnology to enable cell
-
selective
and
programmable
gene therapies. Guide RNAs (gRNAs) play a central role in CRISPR technologies
by directing the function of Cas protein effectors to a target gene of choice, providing a
versatile programmable platform for engineering diverse modes of synthetic regulation
(edit,
silence, induce) across species (from bacteria to humans)
(24)
. However, the fact that
gRNAs
are constitutively active is a significant limitation, making it challenging to confine gRNA activity
to a desired location and time within an organism. To achieve programmable control over the
scope of gRNA activity, the Pierce Lab is utilizing prin
ciples from dynamic RNA nanotechnology
to engineer conditional guide RNAs (cgRNAs) that change conformation in response to an RNA
trigger X,
which make
it
possible to conditionally direct the function of Cas to an independent
target gene Y
(24, 25)
. Candidate genes for radiation countermeasures could be targeted
simultaneously in a tissue
-
specific manner
. For each gene, an en
dogenous RNA trigger X would
be selected to confine the regulation of target gene Y to the desired tissue type
(s)
.
Dr. Afshin Beheshti’s lab has
adpoted
a systems biology approach to develop novel nucleotide
-
based radiation countermeasures. The putative targets are miRNAs (i
-
for interfering; small
non
-
coding RNA with a negative post
-
transcriptional effect on gene expression) which may act
as systemic regu
lators of responses to stressors, including microgravity, oxidative stress, and
potentially radiation
-
induced DNA damage
(26)
. It is known that each miRNA can target
hundreds of mRNAs and regulate immunity, cardiovascular disease, muscle degeneration,
central nervous system (CNS) related diseases, and cancer
(26)
. In addition, specific miRNAs
have been shown to influence and increase DNA repair efficiency
(27)
. Radioresistant lung
can
cer cell lines express increased levels of miRNAs after ionizing radiation, which suggests that
this may be a mechanism of radioresistance
(28)
.
The
group has recently shown that a distinct
ci
rculating spaceflight miRNA signature found in the serum is correlated with cardiovascular
6
disease and muscle degeneration
(29
-
31)
.
Dr. Beheshti’s group is attempting to target miRNAs
as a novel therapeutic approach to
radiation resistance
(29, 31)
.
Antagonists
to certain miRNAs
termed
antagomirs delivered
before
radiation
exposure
effectively prevented angiogenesis damage
(29)
. Delivery was
mediated
using a unique
technology developed by
a company called
AUM Biotech
termed
“AUMantagomirs”
(32, 33)
.
Antagomirs
delivered to a 3D microvessel tissue model 24 h before
exposure to 0.5 Gy
simulated
GCR
prevented the complete collapse of the vessels
.
Molecular
analyses suggest that the effect may be partly mediated by reducing p53
b
inding
p
rotein 1
repair foci and increasing DNA repair activity
(34)
.
A
n analogous
but distinct nucleotide
-
based therapeutic approach involves the Nanoligomer
TM
(Sachi Bioworks) platform developed by Drs. Anushree Chatterjee and Prashant Nagpal’s team
(35)
.
A
Nanoligomer
is comp
osed
of
six design elements, including a peptide nucleic acid (PNA),
a synthetic DNA
-
analog where the phosphodiester bond is replaced with 2
-
N
-
aminoethylglycine
units, as the nucleic acid binding domain,
and
an engineered nanoparticle for facile cellular and
tiss
ue delivery of
the
naked molecule
(36, 37)
.
Nanoligomers offer improved stability, facile
delivery and internalization, high target specificity (on
-
target) and minimal off
-
target
activity.
They
can be designed to rapidly create a library of
many
therapeutic molecules
that can be
screened
(36, 37)
.
This approach
is a high
-
throughput method to customize peptide
-
nucleic
acid
-
based gene
-
specific reversible therapeutics with high precision.
The platform
has
accelerated design, building, testing, and learn
-
based iteration cycles, enabling the timeframe
from drug disco
very to testing to
reduce
from weeks
/
months to
days
.
The
procedure
uses
bioinformatics to predict the optimal sequence of Nanoligomers to exert inhibition (targeting
mRNA or DNA) or activation (targeting DNA) of gene expression of specific
targets. Th
e
information is used to synthesize
a library consisting of hundreds of molecules per round
within
days
. A novel nanoparticle
-
based transport system allows for efficient delivery of Nanoligomers
to host cells at
the
sub
-
micromolar range
which is a therapeut
ic dose
.
Screening of the
Nanoligomer library can be performed in a high
-
throughput manner
.
Using machine learning
algorithms, the platform analyzes the gene expression readouts from the treated cells to
optimize the particular combination of Nanoligomers
that serve as effective countermeasures.
Thus far, Nanoligomers have not caused cytotoxicity
in
vivo
across different routes of
administration, including intranasal, intraperitoneal, and intravenous delivery.
The team has
used this approach to develop Nano
ligomers that are potential radiation protectants.
The COVID
-
19 pandemic afforded an opportunity to test the development of Nanoligomers
as
antivirals against SARS
-
CoV
-
2
. Ef
ficacy
was demonstrated
in both
in
vitro
and
in
vivo
models
(37, 38)
.
This proof of concept exemplifies the versatility of the platform and its broad
applicab
ility.
Having this capability
on
a deep space spacecraft would enable the crew to
develop countermeasures to any novel threats during exploration space missions. The
accelerated design, build, test, and learn cycles and safety and efficacy of Nanoligomers
allow
for customized rapid just
-
in
-
time therapies.
7
The limited market and the costs of new drug development have hindered traditional drug
discovery in radiation countermeasures. Even repurposing approved medications for a novel
indication such as exposur
e to space radiation
may require
costly and lengthy studies
(10)
. This
is precisely why TRISH has funded nucleotide
-
based approaches. With new
molecular tools that
have improved delivery, programmability, tissue
-
specificity, and speed of synthesis, nucleotide
-
based countermeasures now present realistic platform capabilities for deep space missions.
Without access to resupply from Earth, an explo
ration mission crew could synthesize just
-
in
-
time therapeutics to any health threat with agility, speed, and specificity.
4.1
High
-
Risk, High
-
Reward Approaches to Modeling
Human Organs
There is room to innovate in developing
research
model systems that more closely recapitulate
the healthy human
who
will travel in deep space and experience the unique space radiation
environment.
Rodent models are typically used in radiation research and have yielded much
knowledge. The translatability
to the human is less certain.
3D c
omplex
microphysiological
systems
that utilize normal cells from human donors
present a unique opportunity to study
mechanistic biological
changes
in response to space radiation and test potential
countermeasures
in a
more
physiologically relevant manner
(39)
. This
approach
has advantages
for spaceflight research
.
Human
microphysiological
systems
serve
as organ
-
specific ‘sentinels’
d
ue to their
limited repair capacity and tolerance to
stressors. Hence, they
reveal
cascades that
fail early in disease development
. As such
they have the potential to identify
not only
the
effects of acute radiation
but also long
-
term
or delayed
radiation
effects in a shorter
timeframe
,
where
such outcomes may take months or years to ar
ise in a
model
organism.
Another
innovative
approach
is the use of
humaniz
ed”
mouse models
,
immunodeficient mice
engrafted with functional human cells and tissues,
which can
provide an improvement
in the
fidelity with
human
physiology
(40)
.
These advantages have motivated
TRISH
to fund several
research
projects
using
complex human
or humanized rodent
models to develop unique
radiation countermeasures
spanning multiple different organ systems.
4.2
Gastrointestinal System and the Microbiome
Because of
high numbers of stem cells and rapid turnover rate, the human small intestinal
epithelium is
particularly
sensitive to ionizing radiation
.
P
rolonged space travel will
likely cause
small intestin
e
disorders
,
including intestinal mucosal barrier dysfunction
and nutrient
malabsorption.
Organoid models may prove a platform for studying human gastrointestinal
effects
(41, 42)
.
To develop a h
uman model for the small intestine,
Dr.
Sarah
Blutt
uses
tissue
samples obtained from
surgical specimens, endoscopies
,
or
colonoscopies to generate 3D
human
tissue stem
cell
-
derived
gastrointestinal
organoid
cultures.
They have not altered the pH
conditions as the small intestine is thought to be at relatively neutral pH. The group has also
recapitulated the steep oxygen gradient seen
in vivo
(43)
. The crypt like organoids,
predominately made of stem cells survive indefinitely and the
villus
-
like
organoids only live for
about 3
-
5 days, which is the lifespan
in vivo
in humans.
8
The intestinal microbiome consists of a community o
f microorganisms, predominantly bacteria,
that reside within the lumen of the intestinal tract
(44)
.
Because of
its proximity to the
epithelium, the intestinal microbiome is a constant source of signals to the epithelium,
including factors that protect, heal, and
support intestinal epithelial health. Microbial factors
could influence the proliferation and survival of t
he intestinal stem cell (ISC), the nucleating cell
type necessary for regenerating damaged intestinal epithelium, specifically the villus
epithelium.
Studies in animal models indicate that the presence of the microbiome is associated
with a higher mitotic index, intestinal epithelial turnover, cell migration, and ISC proliferation
(45
-
49)
. Recent work has suggested that the microbiome has the potential to protect from the
intestinal side effects observed with anti
-
cancer radiation treatments and was linked to a
reductio
n in radiation
-
induced epithelial damage and symptoms
(50
-
53)
. Microbial products
can also activate signaling pathways that protect the ISC from radiation
-
induced apoptosis
(54)
.
Dr. Blutt’s
group
is using
the gastrointestinal microbiome to potentiate the
ISC
environment
by
stimulating
epithelial repair and regeneration
to correct damage induced by
simulated space
radiation exposure.
To date,
neither
specific microbial communities
nor
individual
candidate
organisms or
factors responsible for the healing effects have been elucidated. The group has
identif
ied
secreted
factors
naturally
produced by complex commensal communities derived
from healthy human donor stool
that exhibit
stem cell stimulatory properties. Their
approach
of culturing gastrointestinal microbiome
ex
-
vivo
has revealed that microbial factors can
stimulate
human
stem cell activation and proliferat
ion
.
This ongoing work aims
to develop
novel, safe, and cost
-
effec
tive microbiome
-
based countermeasures with minimal side effects
that can be used to protect and stimulate the
ISC
and manage intestinal dysregulation during
long
-
duration
space travel.
4.3
Nervous System
Decades of work using mostly rodents has indicated that the central nervous system is
susceptible to very low levels of space radiation exposure
(5, 6)
.
The applicability to humans
remains to be demonstrated because no human has yet to be exposed to the levels and
duration of deep space rad
iation that will b
e experienced on an exploration mission planned for
the return to the Moon and eventually Mars. The longest Apollo mission was 12 days. Apollo 17
astronauts appeared to have withstood the space radiation exposure without major effects, bu
t
it is unclear how they might have fared after 30 days or longer.
Dr. Maletic
-
Savatic’s group is
examining neurogenesis in human brain organoid models exposed to a low linear energy
transfer (LET) proton beam to mimic components of the particle fluence fo
und in SPEs and
within GCR
(55)
. These models recapitula
te the tissue environment
in
vivo,
which has multiple
neurogenic sites (rosettes) and diverse cell types
including neural stem cells,
neurons,
astrocytes, oligodendrocytes, and microglia.
The group has used two complementary cerebral
organoid models
and
expose
d
them at different time points and different frequencies of
exposure
.
Each organoid is grown at atmospheric O
2
conditions and physiologic pH of 7.25 and
can last up to 18 months in culture.
A detailed
analysis
is underway to
examine molecular,
meta
bolic, cellular, and physiological properties of the
different
cell types that are part of the
neurogenic niche
(56, 5
7)
.
T
he 3D human brain organoid
model
can be used in a high
-
9
throughput manner
for assessing
novel
small molecules that promote neural stem cell self
-
renewal a
nd neurogenesis
or
decreased
microglial inflammation, thus targeting multiple
elements of the neurogenic
niche.
The group has recently discovered a mechanism to rescue neural stem cells and increase
neurogenesis
from damage
using an endogenously produced monounsaturated fatty acid, oleic
acid, which binds to an “orphan” nuclear receptor TLX (NR2E1), a transcription factor essential
for neural stem cell self
-
renewal and proliferation
(58)
. To
understand
further in developing this
naturally occurring fatty acid as a
therapeutic
, the team
applied
novel synthetic chemist
ry
approaches
based on Fragment
-
Based Drug Discovery (FBDD) to identify traditional small
molecules that can modulate the function of the Oleic Acid Receptor
(59)
.
In addition to
molecular countermeasures, transient bursts of electrical stimulation are being tested for
increasing neurogenesis.
This is a promising new therapeutic approach to test and validat
e
space radiation countermeasures in an untransformed
in
vitro
model for the human nervous
system.
4.4
Cardiovascular System
Changes in the cardiovascular system can impact many organs since vascular integrity is
fundamental to for their function.
This is of major concern since simulated s
pace r
adiation
h
as
been shown to affect cardiovascular health and both rodents in larger animals
(7, 60)
.
T
errestrial radiation exposure has been sh
own to affect the cardiovascular system in cancer
survivors, nuclear workers
, and
the Hiroshima and Nagasaki atomic bomb survivors
(61
-
65)
.
Hence, it is important to assess space radiation effects on human experimental models.
Dr. Sharon Gerecht and her team
utilize
a
3D human vascular multicellular model to study how
space radiation modulates tissue
integrity and
function. Specifically,
they
are
using their
novel
tissue
-
engineered small vascular grafts (sVGs) based on
a
process that involves
electrospinning
a natural
polymer that
is then seeded
with vascular
cells derived from human
induced
pluripotent stem cells
(
iPSCs
)
(66
-
68)
.
This
model
system
recapitulates cellular, structural, and
physiochemical features of the
human
vasculature and is easily modulated to generate a range
of blood vessel sizes and types, from microvasculature to arteries.
Cultures are
maintained
in
atmospheric conditions in physiological pH and have been tested for up to 20 days.
The group is
currently
studying
endothelial cell
barrier function, vascular injury, inflammatory readouts,
smooth muscle cells
contractility, and necrosis
in r
esponse to simulated space radiation
.
By u
sing the sVGs model system, the group is uniquely positioned to
also
test potential
countermeasures to vascular damage from space radiation.
The
high mobility group box 1
(HMGB1) protein
is normally
localized to t
he nucleus
but
is secreted from the cell in response
to damage or stress, and likely also radiation exposure
(69)
.
Secreted HMGB1 serves as an
endogenous dan
ger
-
associated molecular pattern (DAMP) protein, binding to pattern
recognition receptors (PRRs) to activate inflammatory pathways of the innate immune system
(70, 71)
.
Since unresolved inflammation associated with HMGB1 can
initiate
pathogenesis of
the vasculature and cause vascular disorders,
autoimmune disease, arthritis, heart disease, and
10
neurodegenerative disease, HMGB1
is
a promising drug
target
(71, 72)
.
Dr. Gerecht’s team is
developing novel high
-
affinity antagonists of HMGB1.
To achieve this, they
are employing
molecular evolution
approaches
to
produce
putative
antagonist p
roteins that block the
activities of HMGB1.
By u
sing natural HMGB1 as an engineering template,
they
apply
structure
-
based molecular design
(73)
to generate a library of variants f
or selection using the yeast
display platform
(74, 75)
.
Iterative rounds of
magnetic
-
activated cell sorting (MACS) and
fluorescence
-
activated cell sorting (FACS)
on yea
st cells
are used to isolate high
-
affinity
antagonist
s
that potently block inflammatory HMGB1 signaling
. MACS and FACS are also used
to optimize antagonists
.
Although the present work focuses on HMGB1 inhibition
, the Gerecht
group’s
versatile engineering a
pproach can be applied to other
protein targets in
pathways
activated by radiation.
Another TRISH
-
funded team
of investigators from Colorado State University, Stanford
University
,
and the University of Colorado
is
also developing a cardiovascular model, specifically
engineer
ing
human heart tissues (EHT)
(76)
.
3D
-
engineered cardiac models have been shown to
have less variability and hypersensitivity to drugs compared to 2D monolayers with the same
cellular composition
(77)
.
EHTs resemble native anisotropic myocardial tissue and are
derived
from iPSC
s
differentiated into
different
lineages:
cardiomyocytes, endothelial cells
(EC)
,
and
cardiac
fibroblasts
. These
cultures
mimic the extracellular tissue
-
like environment of the heart
and its multicellular composition.
Arterial oxygen concentration is ~14%, whereas in the
myocardium
,
it is less than 10%
(78, 79)
.
In
vitro
,
standard
culture conditions are typically
maintained
at 20% oxygen,
which represents hyperoxia compared to the oxygen tension within
myocardial niches. Higher oxygen levels
in
vitro
could blunt physiological processes such as
proliferation and metabolism
(80)
. However, higher oxygen tension helps in the maintenance of
a homeostatic environment for the human engineered cardiac tissues, driving oxidative
phosphorylation pathways critical for maturation in c
ulture. The
EHTs
are cultured at buffered
physiological pH (7
-
7.6) with regular medium replenishment to prevent acid
ification.
Characterization of these cardiac models using the current protocols demonstrate comparable
structural and molecular features to its stage
-
matched
in vivo
cou
nterpart.
The EHT platform
enables
physiological analys
e
s such as contractility, electr
ophysiology, and calcium
transport
.
In
a semi high
-
throughput manner, one can test countermeasures against radiation
-
induced
damage of various cardiac cell types
.
The EHT have been studied in culture for up to 90 days
with long
-
term culture beyond 3 months
under current investigation.
EHTs are being exposed to
chronic
low dose rate
137
Cs γ
-
rays and 14
MeV neutrons
mimicking
the
space
radiation
field
.
This
experimental strategy
was enabled by
TRISH
-
funded
modification
of
an existing radiation facility
at C
olorado State University
by the addition of a D
-
T neutron
generator, enabling
for the first
-
time,
protracted exposures of cultured tissues.
Collaborations
are enabling the testing of p
otential radiation
countermeasure
targets
identified through
genomics
,
metabolomics
,
and proteomic analyses
will be tested via
adeno
-
associated virus
delivery
and Nanoligomer delivery (described
above
)
using
the EHT model.
4.5 Hematopoietic System
11
Studies in animals and humans have demonstrated that the hematopoietic
system is highly
sensitive to radiation damage
(81)
. To
create
a model for human hematopoiesis that could be
used to test space radiation countermeasures, Dr. Christopher Porada’s group developed
mouse “avatars” whose endogenous
murine
hematopoietic systems are replaced with human
hematopoietic stem/progenitor cells (HSC) from healthy donors of approximate astronaut age.
By u
sing this mouse model, they demonstrated that exposure to Mars mission
-
relevant dose
s
of SPE protons or GCR ions p
rofoundly affects human hematopoiesis and introduces mutations
in genes associated with hematopoiesis distinct from those induced by gamma radiation.
Perhaps most concerning
is that
exposure to some of the higher energy HZE ions,
e.g.
,
56
Fe ions,
resulted
in the generation of human T
-
cell acute lymphoblastic leukemia
in
vivo
(82)
. This ability
to reconstitute human hematopoiesis and perform
in
vivo
exposures to Mars mission
equivalent
doses and ion species of radiation provides a powerful experimental model system
that can be used to explor
e possible LET effects. The humanized mice have now been exposed
to single ion beams of
16
O ions and
28
Si ions, as well as the NASA Space Radiation Laboratory’s
simplified 5
-
ion GCR Simulator at Brookhaven National Lab. This model may be useful in
identifying space radiation
damage
biomarkers, developing mission
-
compatible multi
-
omics
platforms to enable screening of astronauts for
just
-
in
-
time
radiation
-
induced stress/damage
.
The humanized mice can
b
e used to test potential,
radiation countermeasur
es.
As an example,
t
he group
has preliminary data to indicate that
c
urcumin
is
an effective radiation
countermeasure when the solubility and bioavailability were enhanced by packaging it in
nanolipoprotein particles (NLPs)
in
the hematopoiesis
-
humanized mi
ce
.
4.6
Multi
-
Organ System
s
Although looking at individual organ system effects via organoids can be
insightful
, r
adiation
damage would affect the entire body of a crew member, and damage to specific organs w
ould
be likely to impact other organs through multiple
mechanisms
of cellular signaling.
To replicate
some aspects of the whole
-
body system, Dr. Gordana Vunjak
-
Novakovic’s group enables the
humoral
communication between distinct bioengineered tissues repre
senting
different
organ
systems. This integration of multiple 3D complex microphysiological systems was developed
over many years
(83, 84)
. Each tissue type is provided with its own specialized environment and
is c
onnected to other tissues by vascular perfusion, as a selectively permeable endothelial
barrier can distinctly separate the vascular and tissue compartments. The tissues are fabricated
using human
cells (both primary and iPSCs) and tissue
-
specific biomater
ial scaffolds, and are
matured individually over 4
-
6 weeks before being placed into the platform. The bioengineered
tissues are linked by perfusion and cultured for an additional
4
weeks,
thereby
allowing f
or
cross
-
talk between each individual organ
(85)
.
For studies of the effects of
GCR
radiation on human body, this body
-
on
-
a
-
chip platform
contain
s
engineered human tissue models of bone marrow (site of hematopoiesis and acute
radiation toxicity), cardiac muscle (site of chronic radiation damage), liver (site of metabolism),
and vasculature (barrier for transport of signals throughout the system). Th
e adult
-
like human
cardiac muscle
is
engineered from human iPSCs and matured in culture by electromechanical
conditioning
(86)
.
After only
4
weeks of culture, cardiac tissues displayed adult
-
like gene
12
expression profiles, remarkably organized ultrastructure, oxidative meta
bolism, and contractile
properties. The human bone marrow model
can
produce downstream blood and immune cells,
as well as in
corporates the complexity of multiple cell populations, with human mesenchymal
stem and stromal cells, osteoblasts, endothelial cells, and CD34+ hematopoietic
stem/progenitor cells introduced within a decellularized bone scaffold
(87)
.
The group can
control oxygen level in these platforms, from 0.1% to 21% oxygen
. Studies on the effe
cts of GCR
have been conducted in normoxia (21% oxygen). The body
-
on
-
a
-
chip platform can be regularly
maintained for 2 months; however,
the bone marrow system can last
for
3 months and the
cardiac muscle system can last up to 8 months specifically
(85)
.
Columbia’s Radiological Research Accelerator is used by Dr. Vunjak
-
Novakovic’s group to test
the effects of neutron radiation on extended
-
living cultures of the body
-
on
-
a
-
chip system, and
to
observe differences in the cultures’ responses to acut
e and protracted exposures. The value
of this model to study space radiation effects on the human hematopoietic system was further
demonstrated through characterization of myeloid cell subtypes, the extracellular matrix
remodeling, and leukocyte chemotaxis
typically associated with activated myeloid cells. These
studies helped establish a platform for studying human hematopoiesis
in
vitro
and developing
novel radiation protectants.
The discussed individual platforms have the potential to improve our mechanistic
understanding of radiation damage to tissues. Importantly, as they are improved and better
recapitulate the human organ, they may serve as effective test beds for possible rad
iation
therapeutic countermeasures complementing the animal studies and improving translation to
humans. With the ability to connect multiple tissue
-
on
-
a
-
chip systems to make a body
-
on
-
a
-
chip, it is possible to test even more accurately the realistic effec
ts of an intervention on a
particular human. A body on a chip can be
derived from stem cells obtained from an astronaut
who is selected for a deep space exploration mission. NASA has recently partnered with the NIH
and other agencies to fund work to extend
the longevity of these tissue
-
on
-
a
-
chip and body
-
on
-
a
-
chip platforms. These models hold great promise for space radiation protections as well as
for
many other applications in drug discovery.
5.1
Future
Directions
TRISH has been charged by NASA to help
it solve the challenges of human deep space
exploration by funding disruptive more high
-
risk research. A top concern for human health
beyond
LEO
is space radiation. Much work to date has focused on rodent models and
traditional countermeasures. TRISH chos
e to take three different new approaches. First, by
focusing on
genetically accessible
lower
-
organisms, for which genomic manipulation can be
performed with high
-
throughput and extremophiles that can survive in extreme radiation
environments, TRISH is iden
tifying new targets for radiation countermeasures. Second, TRISH
believes that nucleotide
-
based therapeutic approaches are more agile as their synthesis can be
potentially
accommodated off the planet.
This provides an alternative to the strategy
undertaken
by NASA to repurpose FDA
-
approved medications that prove effective
radioprotectors or radiomitigators for space
-
radiation induced carcinogenesis
(10)
.
Clinical
13
applications for nucleotide
-
based therapeutic approaches is still in its infancy, but it is
important to make investments to drive these fields forward.
Third, TRISH has invested in
developing models based on human systems. The humani
zed mice and the human organoid
and complex microphysiological systems (organs on a chip) complement animal studies.
Together, we will have a more complete understanding of the effects of
radiation during
deep
space travel and be able to provide each crew
member with appropriate and effective
personalized countermeasures.
For example, the tissues
-
on
-
a
-
chip systems could be used to understand individual radiation
risk and drug efficacy. Since the effects of the space environment, specifically radiation, a
re
highly variable among individuals; the ability to test each person’s sensitivity to space radiation
would be a game
-
changer
(88)
.
Patient
-
derived organoids or organs
-
on
-
a
-
chip are already being
used in clinical trials for cancer therapy
(15, 89)
.
In the space context, individuals bound for a
deep space mission would provide samples to derive iPSCs, which would be used to generate
organoids or organs
-
on
-
a
-
chip. The cultures would then be exposed to real or
simulated space
radiation for testing. Given that the systemic physiological responses can differ quite
significantly from one person to another, this
would enable the personalization of risk profiles
and the customization and testing of radiation counterm
easures by using an individualized
“astronaut
-
on
-
a
-
chip” approach.
Future tissue
-
on
-
a
-
chip research can also lead to a more accurate investigation of real
-
time GCR
exposure testing since they are small enough to be included in autonomous payloads exposed
to deep space. More work is needed to increase the longevity of these micro
-
physiological
systems and to develop the technologies that allow the automation of culturing and reporting
of physiology and function of these “human avatars” while they are in sp
ace. NASA has recently
partnered with other government agencies such as the NIH to solicit for research that will
address longevity of tissues
-
on
-
a
-
chip model systems. If these cultures could continue for up to
6 months, they could be tested as autonomous
payloads beyond LEO to determine the
tissue
donor
’s
own susceptibility to radiation exposure. Knowledge ahead of a deep space mission
about susceptibility of the crew would inform a personalized mitigation strategy.
The investments made in tissue
-
enginee
ring, new
accessible
organism model systems, and
nucleotide
-
based therapeutic approaches are at present considered high
-
risk research. If
successful, some of these technologies could be impactful for not only reducing the health
impacts to humans exploring
deep space but also to the humans who remain on
E
arth in their
pursuit of health and longevity.
Acknowledgments
:
This work was supported by the Translational Research Institute for Space Health through NASA
Cooperative Agreement NNX16AO69A.
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