# Energy matrix for RNAP in arbitrary units. Inferred from an
# experiment done in TK310 with no supplemental cAMP (and hence, no
# CRP present in the cells). The matrix covers base pairs [-41:-1]
# where 0 denotes the transcription start site. Each row corresponds
# to a given position; each column corresponds to a value for that
# base pair. The columns are ordered [A,C,G,T].
   3.3090086e-02   8.4338901e-01   1.9145915e-01   5.7156605e-01
   2.3776175e-01   1.5712752e+00   6.7058076e-03   1.3919617e+00
   1.0944116e+00   8.2535084e-01   7.1361981e-01   2.2328462e-06
   5.9864426e-02   1.0066429e+00   6.9407124e-02   9.7620436e-01
   2.6802048e+00   1.2734957e+00   0.0000000e+00   5.7258818e+00
   4.3852720e+00   7.0449035e+00   4.7688539e+00   0.0000000e+00
   3.0848289e+00   3.9709489e+00   3.4340292e+00   0.0000000e+00
   1.2843899e+01   1.2775114e+01   0.0000000e+00   6.7068567e+00
   0.0000000e+00   9.5273671e+00   1.2366599e+00   7.1684270e+00
   9.7567254e+00   7.0366632e-01   1.0145991e+01   0.0000000e+00
   0.0000000e+00   6.8593905e+00   4.3133704e+00   2.3905484e+00
   0.0000000e+00   1.7594332e+00   1.3839752e+00   6.8668172e-01
   7.5845192e-01   1.5786643e+00   0.0000000e+00   7.0599327e-01
   2.8890547e-01   9.5169374e-01   2.8413340e-02   1.0598483e+00
   5.3030278e-01   9.4433893e-01   6.7437472e-01   7.2803717e-05
   0.0000000e+00   1.9163061e+00   9.9594277e-01   1.7259675e+00
   1.4990845e+00   1.0768794e+00   7.7364760e-01   0.0000000e+00
   0.0000000e+00   2.9917723e+00   2.1527347e+00   4.1632716e+00
   4.1263772e-01   7.9893094e-03   1.9843027e-01   1.2690202e+00
   4.9869143e-01   7.2434231e-01   5.6449291e-01   2.7238914e-04
   2.5038165e-01   6.5802748e-01   2.1211249e-01   4.2288681e-02
   0.0000000e+00   1.0634132e+00   1.0747566e+00   8.7305312e-01
   2.8977506e-01   4.9904053e-01   8.8848304e-02   1.1179347e-01
   3.2567358e-01   1.2689945e+00   1.1829313e+00   6.0211464e-03
   2.7597944e+00   2.4891846e+00   2.6693995e+00   0.0000000e+00
   0.0000000e+00   3.3573277e+00   1.2712026e+00   4.6265286e+00
   1.8671571e+00   2.9598860e+00   0.0000000e+00   2.3774089e+00
   4.2376464e+00   8.0605587e+00   0.0000000e+00   4.6122469e+00
   1.9201763e+00   1.4430513e+00   0.0000000e+00   7.6884400e-01
   4.9396224e+00   7.8252084e+00   9.9642909e+00   0.0000000e+00
   0.0000000e+00   1.1449195e+01   1.0351181e+01   1.1048615e+01
   1.3484172e+00   3.4139074e+00   4.2597235e+00   0.0000000e+00
   0.0000000e+00   4.2758871e+00   5.5404763e+00   6.0569935e+00
   0.0000000e+00   2.1330405e+00   5.5662408e+00   5.8880615e+00
   7.0033761e+00   1.0815480e+01   9.2473926e+00   0.0000000e+00
   0.0000000e+00   3.4444978e+00   1.7185707e+00   3.0026213e+00
   2.0895130e-01   2.5615064e+00   9.1081798e-01   1.1727280e-02
   1.3337890e-05   1.1660204e+00   1.1205350e+00   7.2778078e-01
   1.9009344e-01   1.0398295e+00   2.5208391e-01   3.1778086e-02
   0.0000000e+00   3.1166170e+00   2.7723361e+00   2.4297976e+00
   4.3042402e-01   5.1900833e-01   8.7572299e-01   1.2296102e-03