Organic nitrate chemistry and its implications for nitrogen
budgets in an isoprene- and monoterpene-rich atmosphere:
constraints from aircraft (SEAC
4
RS) and ground-based (SOAS)
observations in the Southeast US
J. A. Fisher
1,2
,
D. J. Jacob
3,4
,
K. R. Travis
3
,
P. S. Kim
4
,
E. A. Marais
3
,
C. Chan Miller
4
,
K. Yu
3
,
L. Zhu
3
,
R. M. Yantosca
3
,
M. P. Sulprizio
3
,
J. Mao
5,6
,
P. O. Wennberg
7,8
,
J. D. Crounse
7
,
A. P.
Teng
7
,
T. B. Nguyen
7,a
,
J. M. St. Clair
7,b
,
R. C. Cohen
9,10
,
P. Romer
9
,
B. A. Nault
10,c
,
P. J.
Wooldridge
9
,
J. L. Jimenez
11,12
,
P. Campuzano-Jost
11,12
,
D. A. Day
11,12
,
W. Hu
11,12
,
P. B.
Shepson
13,14
,
F. Xiong
13
,
D. R. Blake
15
,
A. H. Goldstein
16,17
,
P. K. Misztal
16
,
T. F. Hanisco
18
,
G. M. Wolfe
18,19
,
T. B. Ryerson
20
,
A. Wisthaler
21,22
, and
T. Mikoviny
21
1
Centre for Atmospheric Chemistry, School of Chemistry, University of Wollongong, Wollongong,
NSW, Australia
2
School of Earth and Environmental Sciences, University of Wollongong, Wollongong, NSW,
Australia
3
Harvard John A. Paulson School of Engineering and Applied Sciences, Harvard University,
Cambridge, MA, USA
4
Department of Earth and Planetary Sciences, Harvard University, Cambridge, MA, USA
5
Program in Atmospheric and Oceanic Sciences, Princeton University, Princeton, NJ, USA
6
Geophysical Fluid Dynamics Laboratory/National Oceanic and Atmospheric Administration,
Princeton, NJ, USA
7
Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA,
USA
8
Division of Engineering and Applied Science, California Institute of Technology, Pasadena, CA,
USA
9
Department of Chemistry, University of California at Berkeley, Berkeley, CA, USA
10
Department of Earth and Planetary Science, University of California at Berkeley, Berkeley, CA,
USA
11
Department of Chemistry and Biochemistry, University of Colorado, Boulder, CO, USA
12
Cooperative Institute for Research in Environmental Sciences, University of Colorado, Boulder,
CO, USA
13
Department of Chemistry, Purdue University, West Lafayette, IN, USA
Correspondence to: J.A. Fisher (jennyf@uow.edu.au).
NASA Public Access
Author manuscript
Atmos Chem Phys
. Author manuscript; available in PMC 2018 April 19.
Published in final edited form as:
Atmos Chem Phys
. 2016 ; 16(9): 5969–5991. doi:10.5194/acp-16-5969-2016.
NASA Author Manuscript
NASA Author Manuscript
NASA Author Manuscript
14
Department of Earth, Atmospheric and Planetary Sciences, Purdue University, West Lafayette,
IN, USA
15
Department of Chemistry, University of California Irvine, Irvine, CA, USA
16
Department of Environmental Science, Policy, and Management, University of California at
Berkeley, Berkeley, CA, USA
17
Department of Civil and Environmental Engineering, University of California at Berkeley,
Berkeley, CA, USA
18
Atmospheric Chemistry and Dynamics Laboratory, NASA Goddard Space Flight Center,
Greenbelt, MD, USA
19
Joint Center for Earth Systems Technology, University of Maryland Baltimore County, Baltimore,
MD, USA
20
Chemical Sciences Division, Earth System Research Lab, National Oceanic and Atmospheric
Administration, Boulder, CO, USA
21
Department of Chemistry, University of Oslo, Oslo, Norway
22
Institute for Ion Physics and Applied Physics, University of Innsbruck, Innsbruck, Austria
a
Now at Department of Environmental Toxicology, University of California at Davis, Davis, CA,
USA
b
Now at Atmospheric Chemistry and Dynamics Laboratory, NASA Goddard Space Flight Center,
Greenbelt, MD, USA and Joint Center for Earth Systems Technology, University of Maryland
Baltimore County, Baltimore, MD, USA
c
Now at Department of Chemistry and Biochemistry and Cooperative Institute for Research in
Environmental Sciences, University of Colorado, Boulder, CO, USA
Abstract
Formation of organic nitrates (RONO
2
) during oxidation of biogenic volatile organic compounds
(BVOCs: isoprene, monoterpenes) is a significant loss pathway for atmospheric nitrogen oxide
radicals (NO
x
), but the chemistry of RONO
2
formation and degradation remains uncertain. Here
we implement a new BVOC oxidation mechanism (including updated isoprene chemistry, new
monoterpene chemistry, and particle uptake of RONO
2
) in the GEOS-Chem global chemical
transport model with
∼
25 × 25 km
2
resolution over North America. We evaluate the model using
aircraft (SEAC
4
RS) and ground-based (SOAS) observations of NO
x
, BVOCs, and RONO
2
from
the Southeast US in summer 2013. The updated simulation successfully reproduces the
concentrations of individual gas- and particle-phase RONO
2
species measured during the
campaigns. Gas-phase isoprene nitrates account for 25-50% of observed RONO
2
in surface air,
and we find that another 10% is contributed by gas-phase monoterpene nitrates. Observations in
the free troposphere show an important contribution from long-lived nitrates derived from
anthropogenic VOCs. During both campaigns, at least 10% of observed boundary layer RONO
2
were in the particle phase. We find that aerosol uptake followed by hydrolysis to HNO
3
accounts
for 60% of simulated gas-phase RONO
2
loss in the boundary layer. Other losses are 20% by
photolysis to recycle NO
x
and 15% by dry deposition. RONO
2
production accounts for 20% of the
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net regional NO
x
sink in the Southeast US in summer, limited by the spatial segregation between
BVOC and NO
x
emissions. This segregation implies that RONO
2
production will remain a minor
sink for NO
x
in the Southeast US in the future even as NO
x
emissions continue to decline.
1 Introduction
Nitrogen oxide radicals (NO
x
≡
NO + NO
2
) are critical in controlling tropospheric ozone
production (
Monks et al., 2015
, and references therein) and influencing aerosol formation
(
Rollins et al., 2012
;
Ayres et al., 2015
;
Xu et al., 2015
), with indirect impacts on
atmospheric oxidation capacity, air quality, climate forcing, and ecosystem health. The
ability of NO
x
to influence ozone and aerosol budgets is tied to its atmospheric fate. In
continental regions, a significant loss pathway for NO
x
is reaction with peroxy radicals
derived from biogenic volatile organic compounds (BVOCs) to form organic nitrates (
Liang
et al., 1998
;
Browne and Cohen, 2012
). NO
x
loss to organic nitrate formation is predicted to
become increasingly important as NO
x
abundance declines (
Browne and Cohen, 2012
), as
has occurred in the US over the past two decades (
Hidy et al., 2014
;
Simon et al., 2015
).
Despite this increasing influence on the NO
x
budget, the chemistry of organic nitrates
remains the subject of debate, with key uncertainties surrounding the organic nitrate yield
from BVOC oxidation, the recycling of NO
x
from organic nitrate degradation, and the role
of organic nitrates in secondary organic aerosol formation (
Paulot et al., 2012
;
Perring et al.,
2013
). Two campaigns in the Southeast US in summer 2013 provided datasets of
unprecedented chemical detail for addressing these uncertainties: the airborne NASA
SEAC
4
RS (Studies of Emissions and Atmospheric Composition, Clouds, and Climate
Coupling by Regional Surveys;
Toon et al., 2016
) and the ground-based SOAS (Southern
Oxidants and Aerosols Study). Here we use a
∼
25 × 25 km
2
resolution 3-D chemical
transport model (GEOS-Chem) to interpret organic nitrate observations from both
campaigns, with focus on their impacts on atmospheric nitrogen (N) budgets.
Nitrogen oxides are emitted from natural and anthropogenic sources primarily as NO, which
rapidly achieves steady state with NO
2
. Globally, the dominant loss pathway for NO
x
is
reaction with the hydroxyl radical (OH) to form nitric acid (HNO
3
). In the presence of
VOCs, NO
x
can also be lost by reaction with organic peroxy radicals (RO
2
) to form peroxy
nitrates (RO
2
NO
2
) and alkyl and multifunctional nitrates (RONO
2
) (
O'Brien et al., 1995
).
Their daytime formation temporarily sequesters NO
x
, facilitating its export to more remote
environments (
Horowitz et al., 1998
;
Paulot et al., 2012
;
Mao et al., 2013
). RO
2
NO
2
species
are thermally unstable at boundary layer temperatures and decompose back to NO
x
on a
time scale of minutes, except for the longer-lived peroxyacylnitrates (PANs) (
Singh and
Hanst, 1981
). RONO
2
species can dominate NO
x
loss when BVOC emissions are high and
NO
x
emissions are low (
Browne and Cohen, 2012
;
Paulot et al., 2012
;
Browne et al., 2014
)
and may be more efficient for reactive N export than PANs (
Mao et al., 2013
). The amount
of NO
x
sequestered by RONO
2
depends on the interplay between BVOC and NO
x
emissions, the RONO
2
yield from BVOC oxidation, and the eventual RONO
2
fate.
RONO
2
chemistry and impacts are illustrated schematically in Fig. 1, starting from reaction
of NO
x
with BVOCs (mainly isoprene and monoterpenes) to form RONO
2
. The RONO
2
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yield (
α
) from isoprene oxidation by OH has been inferred from laboratory and field
experiments to be 4-15% (
Tuazon and Atkinson, 1990
;
Chen et al., 1998
;
Sprengnether et
al., 2002
;
Patchen et al., 2007
;
Perring et al., 2009a
;
Paulot et al., 2009
;
Nguyen et al., 2014
;
Xiong et al., 2015
). Models have shown nearly this full range of yields to be compatible with
RONO
2
observations, depending on the chemical mechanism assumed. For example, two
models using different isoprene reaction schemes both successfully reproduced observations
from a 2004 aircraft campaign (ICARTT) - one assuming a 4% molar yield (
Horowitz et al.,
2007
) and the other assuming an 11.7% molar yield (
Mao et al., 2013
). The RONO
2
yield
from monoterpene oxidation by OH is even more uncertain. Laboratory measurements exist
only for
α
-pinene, and these show divergent results: 26% (
Rindelaub et al., 2015
), 18%
(
Nozière et al., 1999
), and 1% (
Aschmann et al., 2002
, a lower limit due to significant wall
losses). RONO
2
yields remain a significant uncertainty in BVOC oxidation schemes, with
implications for their impacts on NO
x
sequestration.
The fate of RONO
2
is of central importance in determining whether sequestered NO
x
is
returned to the atmosphere or removed irreversibly. Many first generation RONO
2
(i.e.,
those formed from NO reaction with BVOC-derived peroxy radicals) have a short lifetime
against further oxidation to form a suite of second generation RONO
2
(
Beaver et al., 2012
;
Mao et al., 2013
;
Browne et al., 2014
), especially if they are produced from di-olefins such
as isoprene or limonene. Laboratory studies indicate little NO
x
release during this process
(
Lee et al., 2014
); however, NO
x
can be recycled by subsequent oxidation and photolysis of
second generation species (
Müller et al., 2014
). Estimates of the NO
x
recycling efficiency,
defined as the mean molar percentage of RONO
2
loss that releases NO
x
, range from <5% to
>50% for isoprene nitrates (INs) (
Horowitz et al., 2007
;
Paulot et al., 2009
), and best
estimates depend on assumptions about the IN yield (
Perring et al., 2009a
). NO
x
recycling
efficiencies from monoterpene nitrates (MTNs) have not been observed experimentally, but
model sensitivity studies have shown a 14% difference in boundary layer NO
x
between
scenarios assuming 0% versus 100% recycling (assuming an initial 18% MTN yield,
Browne et al., 2014
). Uncertainty in the NO
x
recycling efficiency has a bigger impact on
simulation of NO
x
and ozone than uncertainty in the RONO
2
yield (
Xie et al., 2013
).
Organic nitrates are more functionalized and less volatile than their BVOC precursors and
are therefore more likely to partition to the particle phase. In the Southeast US,
Xu et al.
(2015)
recently showed that particulate RONO
2
(pRONO
2
) make an important contribution
to total organic aerosol (5-12%), consistent with in situ observations from other
environments (
Brown et al., 2009
,
2013
;
Fry et al., 2013
;
Rollins et al., 2012
,
2013
).
Chamber experiments have shown high mass yields of aerosol from NO
3
-initiated oxidation
of isoprene (15-25%;
Ng et al., 2008
;
Rollins et al., 2009
) and some monoterpenes (33-65%;
Fry et al., 2014
). There is evidence that RONO
2
from OH-initiated oxidation also form
aerosol, although with lower yields, possibly via multi-functionalized oxidation products
(
Kim et al., 2012
;
Lin et al., 2012
;
Rollins et al., 2012
;
Lee et al., 2014
). pRONO
2
are
removed either by deposition or by hydrolysis to form HNO
3
(
Jacobs et al., 2014
;
Rindelaub
et al., 2015
). Both losses augment N deposition to ecosystems (
Lockwood et al., 2008
).
Aerosol partitioning competes with photochemistry as a loss for gas-phase RONO
2
with
impacts for NO
x
recycling. Partitioning also competes with gas-phase deposition, and
because lifetimes against deposition are much longer for organic aerosols than for gas-phase
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precursors (
Wainwright et al., 2012
;
Knote et al., 2015
), this process may shift the enhanced
N deposition associated with RONO
2
(
Zhang et al., 2012
;
Nguyen et al., 2015
) to
ecosystems further downwind of sources.
The 2013 SEAC
4
RS and SOAS campaigns provide a unique resource for evaluating the
impact of BVOC-derived organic nitrates on atmospheric NO
x
. Both campaigns provided
datasets of unprecedented chemical detail, including isoprene, monoterpenes, total and
particle-phase RONO
2
, and speciated INs; during SOAS these were further augmented by
measurements of MTNs. Continuous measurements from the SOAS ground site provide
high temporal resolution and constraints on diurnal variability (e.g.,
Nguyen et al., 2015
;
Xiong et al., 2015
). These are complemented by extensive boundary layer profiling across a
range of chemical environments from the SEAC
4
RS airborne measurements (
Toon et al.,
2016
). Combined, the campaigns covered the summer period when BVOC emissions in the
Southeast US are at a maximum (
Palmer et al., 2006
). These data offer new constraints for
testing models of organic nitrate chemistry, with implications for our understanding of NO
x
,
ozone, and aerosol budgets in BVOC-dominated environments worldwide.
We examine here the impact of BVOC oxidation on atmospheric NO
x
, using the 2013
campaign data combined with the GEOS-Chem model. The version of GEOS-Chem used in
this work represents a significant advance over previous studies, with higher spatial
resolution (
∼
25 × 25 km
2
) that better captures the spatial segregation of BVOC and NO
x
emissions (
Yu et al., 2016
); updated isoprene nitrate chemistry incorporating new
experimental and theoretical findings (e.g.,
Lee et al., 2014
;
Müller et al., 2014
;
Peeters et
al., 2014
;
Xiong et al., 2015
); addition of monoterpene nitrate chemistry (
Browne et al.,
2014
;
Pye et al., 2015
); and consideration of particle uptake of gas-phase isoprene and
monoterpene nitrates. We first evaluate the updated GEOS-Chem simulation using SOAS
and SEAC
4
RS observations of BVOCs, organic nitrates, and related species. We then use
GEOS-Chem to quantify the fates of BVOC-derived organic nitrates in the Southeast US.
Finally, we investigate the impacts of organic nitrate formation on the NO
x
budget.
2 Updates to GEOS-Chem simulation of organic nitrates
We use a new high resolution version of the GEOS-Chem CTM (
www.geos-chem.org
)
v9-02, driven by assimilated meteorology from the NASA Global Modeling and
Assimilation Office (GMAO) Goddard Earth Observing System Forward Processing
(GEOS-FP) product. The model is run in a nested configuration (
Wang et al., 2004
), with
native GEOS-FP horizontal resolution of 0.25° latitude by 0.3125° longitude over North
America (130-60°W, 9.75-60°N). Boundary conditions are provided from a 4° × 5° global
simulation, also using GEOS-Chem. The native GEOS-FP product includes 72 vertical
layers of which
∼
38 are in the troposphere. Temporal resolution of GEOS-FP is hourly for
surface variables and 3-hourly for all others. Our simulations use a time step of 5 minutes
for transport and 10 minutes for emissions and chemistry.
GEOS-Chem has been applied previously to simulation of organic nitrates in the Southeast
US (e.g.,
Fiore et al., 2005
;
Zhang et al., 2011
;
Mao et al., 2013
).
Mao et al. (2013)
recently
updated the GEOS-Chem isoprene oxidation mechanism to include explicit production and
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loss of a suite of second generation isoprene nitrates and nighttime oxidation by nitrate
radicals. While their updated simulation showed good agreement with aircraft observations
from the 2004 ICARTT campaign over the eastern US, we find that the more detailed
chemical payloads available during SOAS and SEAC
4
RS highlight deficiencies in that
mechanism, resulting in large model biases in RONO
2
.
A major component of this work is modification of the organic nitrate simulation in GEOS-
Chem. Our focus here is on the BVOC-derived nitrates for which field measurements are
newly available. GEOS-Chem simulation of PANs was recently updated by
Fischer et al.
(2014)
and is not discussed here. Our improvements to the RONO
2
simulation are detailed
below and include updates to isoprene oxidation chemistry, addition of monoterpene
oxidation chemistry, and inclusion of aerosol uptake of RONO
2
followed by particle-phase
hydrolysis. Other updates from GEOS-Chem v9-02 and comparison to Southeast US
observations are presented in several companion papers.
Kim et al. (2015)
describe the
aerosol simulation and
Travis et al. (2016)
the gas-phase oxidant chemistry. Constraints on
isoprene emissions from satellite formaldehyde observations are described by
Zhu et al.
(2016)
. The low-NO
x
isoprene oxidation pathway and implications for organic aerosols are
described by
Marais et al. (2016)
. Finally,
Yu et al. (2016)
evaluate the impact of model
resolution and spatial segregation of NO
x
and BVOC emissions on isoprene oxidation. Our
simulation is identical to that used in
Travis et al. (2016)
,
Yu et al. (2016)
, and
Zhu et al.
(2016)
.
2.1 Isoprene oxidation chemical mechanism
The basic structure of the GEOS-Chem isoprene oxidation mechanism is described by
Mao
et al. (2013)
, with updates to low-NOx pathways described and validated by
Travis et al.
(2016)
. All updates to the isoprene oxidation mechanism are provided in
Travis et al. (2016)
Tables S1 and S2. Figure 2 shows our updated implementation of OH-initiated isoprene
oxidation in the presence of NO
x
leading to isoprene nitrate (IN) formation. Isoprene
oxidation by OH produces isoprene peroxy radicals (ISOPO
2
) in either
β
- or
δ
-hydroxy
peroxy configurations depending on the location of OH addition. In the presence of NO
x
,
ISOPO
2
reacts with NO to either produce NO
2
(the dominant fate;
Perring et al., 2013
) or
form INs, with the yield of INs (
α
) defined as the branching ratio between these two
channels. Early laboratory measurements of
α
suggested an IN yield between 4.4 and 12%
(
Tuazon and Atkinson, 1990
;
Chen et al., 1998
;
Sprengnether et al., 2002
;
Patchen et al.,
2007
;
Paulot et al., 2009
;
Lockwood et al., 2010
). More recent experiments indicate
continuing uncertainty in
α
, with a measured yield of
α
= 9 ± 4% from the Purdue Chemical
Ionization Mass Spectrometer (CIMS;
Xiong et al., 2015
) and
α
= 13 ± 2% from the Caltech
CF
3
O
−
Time-of-Flight CIMS (CIT-ToF-CIMS; Teng et al., in preparation), despite excellent
agreement during calibrated intercomparison exercises using one isoprene nitrate isomer
(4,3 ISOPN). The sensitivity of the CIT-ToF-CIMS is similar for all isomers of ISOPN (
Lee
et al., 2014
), while the Purdue instrument is less sensitive to the major isomer (1,2 ISOPN)
(
Xiong et al., 2015
). Here, we use a first generation IN yield of
α
= 9%, which we find
provides a reasonable simulation of the SOAS observations and is also consistent with the
SOAS box model simulations of
Xiong et al. (2015)
. We discuss the model sensitivity to the
choice of
α
in Sect. 3.
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For the oxidation of isoprene by OH, the mechanism described in
Mao et al. (2013)
assumed
a first generation IN composition of 40%
β
-hydroxyl INs (
β
-ISOPN) and 60%
δ
-hydroxyl
INs (
δ
-ISOPN). However, new theoretical constraints show that under atmospheric
conditions, (
δ
-channel peroxy radicals are only a small fraction of the total due to fast
redissociation of peroxy radicals that fosters interconversion between isomers and tends
towards an equilibrium population with more than 95%
β
-isomers (
Peeters et al., 2014
).
Using a simplified box model based on the extended Leuven Isoprene Mechanism LIM1, we
found
δ
-isomers were 4-8% of the total peroxy pool in representative Southeast US
boundary layer conditions (temperature
∼
295-300 K, ISOPO
2
lifetime
∼
20-60 seconds). In
what follows, we use an IN distribution of 90%
β
-ISOPN and 10%
δ
-ISOPN. Our box
modeling suggests 10% is an upper limit for the
δ
-ISOPN pool; however, we maintain this
value as it allows improved simulation of species with predominantly
δ
-pathway origins,
including glyoxal and the second generation INs propanone nitrate (PROPNN) and ethanal
nitrate (ETHLN).
First generation ISOPN isomers formed via OH oxidation of isoprene have a short
photochemical lifetime against atmospheric oxidation (
Paulot et al., 2009
;
Lockwood et al.,
2010
;
Lee et al., 2014
). Here we use updated reaction rate constants and products from
Lee
et al. (2014)
that increase the
β
-ISOPN+OH reaction by roughly a factor of two and
decrease ozonolysis by three orders of magnitude (relative to the previous mechanism based
on
Lockwood et al., 2010
;
Paulot et al., 2009
). Changes in
δ
-ISOPN reaction rate constants
are more modest but in the same direction. For both isomers, reaction with OH forms a
peroxy radical (ISOPNO
2
) along with a small (10%) yield of isoprene epoxy diols (
Jacobs et
al., 2014
). Rate constants and products of the subsequent oxidation of ISOPNO
2
to form a
suite of second generation INs follow the
Lee et al. (2014)
mechanism. We explicitly
simulate methylvinylketone nitrate (MVKN) and methacrolein nitrate (MACRN), which are
primarily from the
β
-pathway; PROPNN and ETHLN, which are primarily from the
δ
-
pathway (and NO
3
-initiated oxidation); and C
5
dihydroxy dinitrate (DHDN), formed from
both isomers (
Lee et al., 2014
).
Isoprene reaction with NO
3
is the dominant isoprene sink at night and can also be significant
during the day (
Ayres et al., 2015
), producing INs with high yield (
Perring et al., 2009b
;
Rollins et al., 2009
). This reaction can account for more than 20% of isoprene loss in some
environments (
Brown et al., 2009
) and may explain 40-50% of total RONO
2
in the Southeast
(
Mao et al., 2013
;
Xie et al., 2013
). The mechanism used here is identical to that described
by
Mao et al. (2013)
. Reaction of isoprene with NO
3
forms a nitrooxy peroxy radical
(INO
2
). Subsequent reaction of INO
2
with NO, NO
3
, itself, or other peroxy radicals forms a
first generation C
5
carbonyl nitrate (ISN1) with 70% yield, while reaction with HO
2
forms a
C
5
nitrooxy hydroperoxide (INPN) with 100% yield. In this simplified scheme, we do not
distinguish between
β
- and
δ
- isomers for ISN1 and INPN, nor do we include the C
5
hydroxy nitrate species recently identified in chamber experiments (
Schwantes et al., 2015
).
Mao et al. (2013)
lumped all second generation nitrates derived from ISN1 and INPN into a
single species (R
4
N
2
), but here we assume that the lumped species is PROPNN on the basis
of recent chamber experiments that show PROPNN to be a high-yield photooxidation
product of INs from NO
3
-initiated oxidation (
Schwantes et al., 2015
). This effectively
assumes instantaneous conversion of INs to PROPNN, a simplification that results in a shift
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in the simulated diurnal cycle of PROPNN (see Sect. 3). We do not include here the nitrooxy
hydroxyepoxide product recently identified by
Schwantes et al. (2015)
.
Possible fates for second generation INs include further oxidation, photolysis, uptake to the
aerosol phase followed by hydrolysis (Sect. 2.3), and removal via wet and dry deposition.
Müller et al. (2014)
show that photolysis is likely significantly faster than reaction with OH
for carbonyl nitrates (e.g., MVKN, MACRN, ETHLN, PROPNN) due to enhanced
absorption cross sections and high quantum yields caused by the proximity of the carbonyl
group (a strongly absorbing chromophore) to the weakly-bound nitrate group. Here we
increase the absorption cross sections of the carbonyl INs following the methodology of
Müller et al. (2014
, Sect. 2). Briefly, we first use the PROPNN cross section measured by
Barnes et al. (1993)
to calculate a wavelength-dependent cross section enhancement ratio
(
r
nk
), defined as the ratio of the measured cross section to the sum of the IUPAC-
recommended cross sections for associated monofunctional nitrates and ketones. We then
calculate new cross sections for ETHLN, MVKN, and MACRN by multiplying
r
nk
by the
sum of cross sections from appropriate monofunctional analogues (Table S5). The new cross
sections are 5-15 times larger than in the original model, which used the IUPAC-
recommended cross section of the monofunctional analogue tert-butyl nitrate for all
carbonyl nitrates (
Roberts and Fajer, 1989
). For all species, we calculate photolysis rates
assuming unity quantum yields, whereby the weak O–NO
2
bond dissociates upon a
rearrangement after photon absorption to the carbonyl chromophore (
Müller et al., 2014
).
Peak midday photolysis rates now range from
∼
3 × 10
−5
s
−1
(PROPNN) to
∼
3 × 10
−4
s
−1
(MACRN).
Removal by dry deposition has been updated based on new observations from the SOAS
ground site. The dry deposition calculation is now constrained to match observed deposition
velocities for ISOPN, MVKN, MACRN, and PROPNN (
Nguyen et al., 2015
;
Travis et al.,
2016
), with all other RONO
2
deposition velocities scaled to that of ISOPN. Wet scavenging
of gases is described in
Amos et al. (2012)
and has been modified here to use the same
Henry's Law coefficients as for dry deposition. Aerosol partitioning is described in Sect. 2.3
below.
2.2 Monoterpene oxidation chemical mechanism
Monoterpene chemistry is not included in the standard GEOS-Chem gas-phase chemical
mechanism. Here we implement a monoterpene nitrate scheme developed by
Browne et al.
(2014)
that was built on the RACM2 chemical mechanism (
Goliff et al., 2013
) and evaluated
using aircraft observations over the Canadian boreal forest (
Browne et al., 2014
). Our
implementation is summarized in Fig. 3 and described briefly below, with the full
mechanism available in the Supplement (Tables S1-S3) and at
http://wiki.seas.harvard.edu/
geos-chem/index.php/Monoterpene_nitrate_scheme
. We include two lumped monoterpene
tracers: API representing monoterpenes with one double bond (
α
-pinene,
β
-pinene,
sabinene, and Δ-3-carene) and LIM representing monoterpenes with two double bonds
(limonene, myrcene, and ocimene). Combined, these species account for roughly 90% of all
monoterpene emissions (
Guenther et al., 2012
), and we neglect other terpenes here. During
the day, LIM and API are oxidized by OH to form peroxy radicals. Subsequent reaction with
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NO forms first generation monoterpene nitrates with a yield of 18% (
Nozière et al., 1999
).
These can be either saturated (MONITS) or unsaturated (MONITU), with precursor-
dependent partitioning as shown in Fig. 3. For all subsequent discussion, we refer to their
sum MONIT = MONITU + MONITS.
At night, both LIM and API react with NO
3
to form a nitrooxy peroxy radical that either
decomposes to release NO
2
or retains the nitrate functionality to form MONIT. The
branching ratio between these two fates is 50% nitrate-retaining for LIM + NO
3
(
Fry et al.,
2014
) and 10% nitrate-retaining for API + NO
3
(
Browne et al., 2014
). The 10% nitrate yield
from API + NO
3
is on the low end of the observed range (
Fry et al., 2014
), so simulated
pinene-derived MONIT should be considered a lower bound. In
Browne et al. (2014)
, the
API + NO
3
reaction used the
α
-pinene + NO
3
rate constant from the Master Chemical
Mechanims (MCMv3.2). We have updated this rate constant to
k
API
+NO
3
= 8.33 ×
10
−13
e
490/
T
, a rough average of the MCMv3.3
α
- and
β
-pinene values, as API comprises
both
α
- and
β
-pinenes (the dominant API components, present in roughly equal amounts
during both SEAC
4
RS and SOAS). API and LIM also react with O
3
, but this reaction does
not lead to RONO
2
formation.
We do not distinguish between OH-derived and NO
3
-derived MTN species. MONIT are
subject to removal via wet and dry scavenging, aerosol uptake, photolysis, ozonolysis
(MONITU only) and oxidation by OH. Here, we also add MONIT reaction with NO
3
with
the same rate constant as used for nighttime isoprene nitrates. The products of MONIT
oxidation are currently unknown; here we follow
Browne et al. (2014)
and assume oxidation
produces a second generation monoterpene nitrate (HONIT) that undergoes dry deposition,
photolysis, and oxidative loss. In our simulation, HONIT is also removed via aerosol uptake
(Sect. 2.3).
2.3 Aerosol partitioning of RONO
2
Evidence from laboratory and field studies suggests aerosol uptake is a potentially
significant loss pathway for gas-phase RONO
2
(e.g.,
Day et al., 2010
;
Rollins et al., 2010
;
Darer et al., 2011
;
Fry et al., 2013
,
2014
). In particular, BVOC oxidation by NO
3
radicals
has been shown to result in high organic aerosol yields (
Ng et al., 2008
;
Fry et al., 2009
;
Rollins et al., 2012
). Recent work from SOAS highlighted the role of the monoterpenes +
NO
3
reaction, with an estimated 23-44% yield of organic nitrate aerosol (
Ayres et al., 2015
)
that can explain roughly half of nighttime secondary organic aerosol production (
Xu et al.,
2014
). Isoprene + NO
3
results in smaller but still significant yields;
Xu et al. (2014)
estimate
that isoprene was responsible for 20% of nighttime NO
3
-derived organic aerosol observed
during SOAS. Organic nitrate aerosol yields from daytime oxidation by OH are lower but
non-negligible. At Bakersfield, for example,
Rollins et al. (2013)
found 21% of RONO
2
partitioned to the aerosol phase during the day, and that these could explain 5% of the total
daytime organic aerosol mass.
Aerosol partitioning of RONO
2
has not previously been considered in GEOS-Chem. Here
we add this process using a reactive uptake coefficient (
γ
) parameterization. Our
parameterization was designed to provide a necessary sink for gas-phase RONO
2
species
(overestimated in earlier iterations of our model), and therefore makes a number of
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simplifying assumptions. In particular, we do not allow pRONO
2
to re-partition to the gas
phase (likely to impact the more volatile isoprene-derived nitrates), and uptake coefficients
are defined to fit the measurements of gas-phase species. More accurate simulation of
organic nitrate aerosols would require additional updates that take into account vapor
pressure differences between species (as done recently by
Pye et al., 2015
) and incorporate
new findings from SOAS (
Ayres et al., 2015
;
Lee et al., 2016
). For our simulation, we apply
reactive uptake to all BVOC-derived RONO
2
except PROPNN and ETHLN, which lack
hydroxyl groups and are therefore expected to be significantly less soluble. We assume an
uptake coefficient of
γ
=0.005 for isoprene nitrates (from both daytime and nighttime
chemistry) and
γ
=0.01 for all monoterpene nitrates (Table S4). Our isoprene nitrate uptake
coefficient is in the middle of the range predicted by
Marais et al. (2016)
using a mechanistic
formulation, and is a factor of 4 lower than the upper limit for ISOPN inferred by
Wolfe et
al. (2015)
using SEAC
4
RS flux measurements. Although simplified, we find this
parameterization provides a reasonable fit to the SEAC
4
RS and SOAS observations of
individual gas-phase RONO
2
species measured by the CIT-ToF-CIMS and total pRONO
2
measured by an Aerosol Mass Spectrometer (AMS) (see Sect. 3 and 4).
After partitioning to the aerosol, laboratory experiments have shown that pRONO
2
can
hydrolyze to form alcohols and nitric acid via pRONO
2
+ H
2
O
→
ROH + HNO
3
. Some
pRONO
2
species hydrolyze rapidly under atmospherically-relevant conditions, while others
are stable against hydrolysis over timescales significantly longer than the organic aerosol
lifetime against deposition (
Darer et al., 2011
;
Hu et al., 2011
;
Liu et al., 2012
;
Jacobs et al.,
2014
;
Rindelaub et al., 2015
). Lifetimes against hydrolysis inferred from bulk aqueous and
reaction chamber studies range widely from minutes (
Darer et al., 2011
;
Rindelaub et al.,
2015
) to a few hours (
Liu et al., 2012
;
Lee et al., 2016
) to nearly a day (
Jacobs et al., 2014
).
Here we apply a bulk lifetime against hydrolysis for the entire population of pRONO
2
(similar to
Pye et al., 2015
). In other words, our implementation of aerosol partitioning
involves a two-step process of (1) uptake of gas-phase RONO
2
to form a simplified non-
volatile pRONO
2
species, with rate determined by
γ
, followed by (2) hydrolysis of the
simplified pRONO
2
species to form HNO
3
, with rate determined by the lifetime against
hydrolysis. These steps are de-coupled, and we do not include any dependence of
γ
on the
hydrolysis rate (unlike the more detailed formulation of
Marais et al. (2016
)). In subsequent
sections, we compare the simplified pRONO
2
formed as an intermediate during this process
to total pRONO
2
derived from observations. The assumption of a single hydrolysis lifetime
overestimates the loss rate of non-tertiary nitrates (
Darer et al., 2011
;
Hu et al., 2011
) and
may lead to model bias in total pRONO
2
, particularly in the free troposphere where the
longer-lived species would be more prevalent (see Sect. 4).
We assume here a bulk lifetime against hydrolysis of 1 h, which we found in preliminary
simulations to provide a better simulation of pRONO
2
than longer lifetimes. Our 1 h bulk
hydrolysis lifetime is shorter than the 2-4 h lifetime found in recent analysis of SOAS data
and laboratory experiments (
Boyd et al., 2015
;
Lee et al., 2016
;
Pye et al., 2015
) - likely
reflecting the simplifying assumptions of our uptake parameterization. In any case, the
choice of hydrolysis lifetime does not affect the concentration of gas-phase RONO
2
species
(because pRONO
2
cannot re-partition to the gas phase in the model), and we find this value
provides a reasonable match to AMS measurements of total pRONO
2
at the surface during
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SOAS and SEAC
4
RS (see Sect. 3 and 4). Impacts on HNO
3
are minor: compared to a
simulation without hydrolysis, our simulation with a 1 h lifetime against hydrolysis
increased boundary layer HNO
3
by 20 ppt, or 2.4%.
3 BVOCs and organic nitrates in the Southeast US
We evaluate the updated GEOS-Chem simulation using Southeast US measurements of
isoprene, monoterpenes, and a suite of oxidation products from two field campaigns in
summer 2013. SEAC
4
RS was a NASA aircraft campaign that took place in August-
September 2013 (
Toon et al., 2016
). All observations discussed in this work were taken
onboard the NASA DC-8 (data doi: 10.5067/Aircraft/SEAC
4
RS/Aerosol-TraceGas-Cloud),
which was based in Houston, Texas with an
∼
8-hour flight range. SOAS was a ground-based
campaign that took place in June-July 2013 at the Centreville monitoring site near Brent,
Alabama (32.903°N, 87.250°W).
3.1 Isoprene and monoterpenes
Understanding BVOC sources and chemistry was a primary goal of SEAC
4
RS, resulting in a
large number of boundary layer flights over regions of enhanced biogenic emissions (
Kim et
al., 2015
). Isoprene and monoterpene distributions in Southeast US surface air (80-94.5°W,
29.5-40°N, and below 1 km) measured by PTR-MS are shown in Fig. 4, and their campaign-
median vertical profiles are shown in Fig. 5(b,c). Whole Air Sampler (WAS) measurements
of isoprene and
α
-pinene +
β
-pinene (Fig. S1) are similar, but with more limited sampling
than the PTR-MS. All observations have been averaged to the spatial and temporal
resolution of the model.
The SOAS site is located at the edge of a mixed coniferous and deciduous forest (
Nguyen et
al., 2015
). SOAS observations of isoprene and monoterpenes, measured by PTR-ToF-MS
and averaged to hourly mean values, are shown in Fig. 6. Both species display a clear
diurnal cycle with peak isoprene during day, reflecting the light- and temperature-dependent
source, and peak monoterpenes at night. For monoterpenes, the figure also shows the sum of
α
-pinene +
β
-pinene as measured by 2D-GC-FID, which indicates that these are the
dominant monoterpenes.
Figures 4, 5, and 6 compare observed BVOCs from both campaigns to the GEOS-Chem
simulation, sampled to match the observations. Similar figures for NO
x
can be found in
Travis et al. (2016)
and in Fig. S2. Model bias relative to observations is quantified using the
normalized mean bias
NMB = 100 % × [∑
i
(
M
i
–
O
i
)/∑
i
(
O
i
)]
, where
O
i
and
M
i
are the
observed and modeled values and the summation is over all hours (SOAS) or unique
gridbox-timestep combinations along the flight tracks (SEAC
4
RS). BVOC emissions are
from MEGANv2.1 (
Guenther et al., 2012
) and have been decreased by 15% for isoprene and
doubled for monoterpenes to better match aircraft (isoprene, monoterpene) and satellite
(formaldehyde) observations (
Kim et al., 2015
;
Zhu et al., 2016
). With these scalings
applied, simulated surface isoprene and monoterpenes overestimate somewhat the SEAC
4
RS
data (Fig. 4, mainly due to a few simulated high-BVOC events), but the medians are well
within the observed variability (Fig. 5). Model high bias above 500 m is likely caused by
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excessive vertical mixing through the simulated boundary layer (
Travis et al., 2016
).
Relative to the SOAS data, simulated monoterpenes are biased low by a factor of two, while
isoprene falls within the interquartile range of the measurements. The opposite sign of the
SOAS monoterpene bias relative to the more spatially representative SEAC
4
RS data
suggests a low bias in MEGANv2.1 monoterpene emissions that is unique to the Centreville
gridbox; errors in vertical mixing may also contribute. For isoprene, the model reproduces
both the observed nighttime decline and the subsequent morning growth with a small delay
(
∼
1 hour).
The observed declines in isoprene at night (Fig. 6) and above the boundary layer (Fig. 5)
reflect its short lifetime against oxidation. We find in the model that OH oxidation accounts
for 90% of isoprene loss (
Marais et al., 2016
), but only 65% of monoterpenes loss (with
NO
3
responsible for most of the rest). For isoprene, the subsequent fate of the peroxy
radicals (ISOPO
2
) has been evaluated in detail by
Travis et al. (2016)
, who also present an
in-depth analysis of the NO
x
budget and impacts on ozone. They show that on average 56%
of ISOPO
2
reaction during SEAC
4
RS is with NO, and that there is large spatial variability in
this term that is accurately reproduced by the high-resolution GEOS-Chem simulation. Here
we focus exclusively on this pathway and the resultant formation of RONO
2
from both
isoprene and monoterpenes.
3.2 First generation RONO
2
Observed near-surface mixing ratios of first generation isoprene nitrates (ISOPN) during
SEAC
4
RS are shown in Fig. 7 and are generally well represented by GEOS-Chem (
r
= 0.61;
NMB = -0.6%). ISOPN vertical profiles in Fig. 5e indicate a rapid decline from the
boundary layer to the free troposphere, reflecting the short atmospheric lifetime (2-4 h in our
simulation; Table 1). Comparing the lowest altitude SEAC
4
RS observations to the SOAS
median from the CIT-ToF-CIMS (black triangle) indicates an apparent vertical gradient from
the surface to
∼
500 m. This could be caused by spatial variability between the campaigns, or
could reflect rapid dry deposition of ISOPN with limited vertical mixing. GEOS-Chem does
not simulate this SOAS-SEAC
4
RS difference, possibly due to overly strong vertical mixing
through the modeled boundary layer as identified by
Travis et al. (2016)
from model
comparison to SEACIONS ozonesonde observations.
During SOAS, ISOPN was measured simultaneously by the CIT-ToF-CIMS (
Crounse et al.,
2006
;
Nguyen et al., 2015
) and the Purdue CIMS (
Xiong et al., 2015
), and Fig. 6 shows the
diurnal cycles from both. Median ISOPN from the Purdue CIMS is a factor of two higher
than that from the CIT-ToF-CIMS during daylight hours, with the most significant
differences in mid-late morning. In both datasets, ISOPN peaks around 10:00 am local time,
is elevated until early evening, and declines to a pre-dawn minimum. Simulated ISOPN from
GEOS-Chem is in good agreement with the Purdue CIMS measurements except in the
afternoon when modeled ISOPN shows a broad peak (rather than the observed decline)
coincident with simulated peak isoprene (Fig. 6). After
∼
7:00 pm, the model captures the
observed timing of the nighttime ISOPN decline seen in both datasets, as well as the rapid
morning growth seen in the Purdue CIMS measurements.
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As described in Sect. 2.1, there is considerable uncertainty in the ISOPN yield. We find here
that a 9% yield provides the best simulation of the ensemble of SEAC
4
RS and SOAS
observations, given experimental constraints on oxidative loss rates (
Lee et al., 2014
) and
dry deposition fluxes (
Nguyen et al., 2015
). Using model sensitivity studies, we found that
applying a lower yield of 7% improved the agreement with the CIT-ToF-CIMS during
SOAS, but worsened agreement with the other datasets and is inconsistent with the yields
from laboratory experiments (Teng et al., in preparation). We also tested a higher yield of
12%, and found the model overestimated observed SEAC
4
RS and SOAS ISOPN (from both
instruments) unless we invoked much larger aerosol uptake and/or added another ISOPN
sink. ISOPN sinks (especially aerosol uptake) remain poorly constrained, and the uncertain
parameter space describing these processes likely contains multiple solutions that fit the
observations equally well (i.e., a higher yield could be accommodated by faster ISOPN loss
to aerosol).
Our finding that GEOS-Chem can reproduce the Purdue CIMS ISOPN observations using a
9% ISOPN yield is consistent with the box model of
Xiong et al. (2015)
. The chemical
mechanisms used in both studies are similar. In both simulations, modeled ISOPN was
overestimated unless an extra sink was included (also consistent with
Wolfe et al., 2015
,
who inferred a missing sink based on SEAC
4
RS flux measurements). While we assumed this
sink was due to aerosol uptake,
Xiong et al. (2015)
invoked enhanced ISOPN photolysis.
They argued that models typically underestimate the ISOPN absorption cross section by not
taking into account the combined influence of the double bond and hydroxyl group in the
ISOPN structure (Fig. 2).
Xiong et al. (2015)
were better able to reproduce the observed
ISOPN morning peak and afternoon decline when they increased the MCMv3.2 photolysis
rate constant by a factor of 5. Including both faster ISOPN photolysis and uptake to the
aerosol phase could be a means to accommodate a higher initial ISOPN yield, such as the
12-14% yield inferred from laboratory experiments with the CIT-ToF-CIMS (Teng et al., in
preparation), although both sinks remain unverified. The nature of the sink has implications
for NO
x
recycling from isoprene nitrates (photolysis recycles NO
x
while uptake removes it),
and this remains a source of uncertainty in our estimates of the impacts of RONO
2
on the
NO
x
budget.
Even more uncertain than ISOPN are the first generation monoterpene nitrates (MONIT).
MONIT in GEOS-Chem is a lumped species that represents the sum of monoterpene nitrates
from both daytime OH-initiated and nighttime NO
3
-initiated oxidation (Sect. 2.2). The
nighttime oxidation cascade involves a diversity of reactants (including NO, HO
2
, NO
3
, and
other peroxy radicals) and produces a diversity of monoterpene nitrate species (
Lee et al.,
2016
) that we do not distinguish here. In the model, most MONIT is produced from the
NO
3
-initiated chemistry, resulting in mean MONIT concentrations of 30-60 ppt at night and
∼
10-20 ppt during the day.
During SOAS, two monoterpene nitrates were measured by the CIT-ToF-CIMS: C
10
H
17
NO
4
and C
10
H
17
NO
5
. We find that simulated MONIT shows the same diurnal pattern as the sum
of the two measured species (with peak concentrations at night) but is a factor of 2-3 higher
(Fig. S3).
Pye et al. (2015)
similarly found simulated MONIT was a factor of 7 higher than
observations using a version of the CMAQ model with explicit MONIT chemistry. The
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higher modeled values in both studies presumably reflect inclusion in modeled MONIT of
many species that were not measured by CIT-ToF-CIMS (including several identified during
SOAS by
Lee et al., 2016
), as well as biases in the model mechanisms (most of the rate
constants and products have not been measured). NO
3
-initiated monoterpene oxidation is
particularly uncertain and is likely too strong in GEOS-Chem, as indicated by large
nighttime MONIT overestimates (Fig. S3) combined with monoterpene underestimates (Fig.
6). Simulated nighttime peak values of NO
3
-derived isoprene nitrates (ISN1) during SOAS
are also up to a factor of 2 higher than the observations reported by
Schwantes et al. (2015)
.
This suggests that model biases in nighttime PBL heights and associated vertical mixing
may also contribute to simulated nighttime overestimates for some RONO
2
species.
3.3 Second generation RONO
2
and pRONO
2
First generation ISOPN and MONIT undergo further oxidation to form a suite of second
generation RONO
2
species that retain the nitrate functionality (Figs. 2, 3). Four of these
species (MVKN, MACRN, PROPNN, and ETHLN) were measured by the CIT-ToF-CIMS,
with vertical profiles shown in Fig. 5 (f-h) and spatial distribution shown in Fig. 7. The
model provides a good simulation of SEAC
4
RS MVKN+MACRN but underestimates the
variability of PROPNN and ETHLN. In contrast, all three species show positive mean model
biases relative to the SOAS surface observations. The model tends to overestimate PROPNN
and ETHLN at night but underestimate them during the day (Fig. S3), reflecting the
assumption in our mechanism that PROPNN is produced at night during NO
3
-initiated
isoprene oxidation. In reality, the nighttime chemistry produces INs that only photo-oxidize
to PROPNN after sunrise (
Schwantes et al., 2015
). This missing delay between nighttime
NO
3
addition and subsequent daytime photo-oxidation likely also explains the model bias
relative to the SEAC
4
RS observations, which mostly took place during daytime. Additional
simplifications in the NO
3
-initiated chemistry could also contribute to the biases, and
preliminary simulations conducted with the AM3 model show that including more details of
this chemistry improves model ability to match observed PROPNN (Li et al., in preparation).
Some of the bias may also be due to error in the assumed distribution between
β
- and
δ
-
channel OH-initiated oxidation, as both PROPNN and ETHLN are produced by the latter
channel only.
The full time series of first and second generation INs measured at Centreville during SOAS
are shown in Fig. 8. We also include the time series of observed particulate RONO
2
(pRONO
2
) estimated from AMS measurements (
Fry et al., 2013
;
Ayres et al., 2015
;
Lee et
al., 2016
; Day et al., in preparation) and of
Σ
ANs, the sum of all RONO
2
species (including
pRONO
2
) as measured by thermal dissociation laser-induced fluorescence (TD-LIF;
Day et
al., 2002
). Despite the biases identified above, the simulation captures the temporal
variability in gas-phase, particulate, and total RONO
2
observed over the 6-week campaign,
with correlation coefficients of
r
∼
0.6-0.7. Low observed and modeled values for all species
in early July (days 185-189) indicate suppressed BVOC emissions caused by low
temperatures (
Marais et al., 2016
). The model underestimates both pRONO
2
and
Σ
ANs at
night (Fig. S3), suggesting that hydrolysis of particulate monoterpene nitrates should be
slower than assumed here (Sect. 2.3). Afternoon overestimates of pRONO
2
relative to the
AMS observations (Fig. S3) are coincident with the peak in isoprene nitrates (Fig. 6),
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suggesting overly strong partitioning to the aerosol phase likely due to our assumption of
irreversibility (Sect. 2.3).
3.4 RONO
2
-HCHO relationship
The relationship between organic nitrates and formaldehyde (HCHO), a high-yield product
of the ISOPO
2
+ NO reaction, provides an additional test of the model chemistry and in
particular the IN yield. Daytime isoprene oxidation in the presence of NO
x
co-produces
HCHO and INs, resulting in an expected strong correlation between these species (
Perring et
al., 2009a
). When INs dominate total RONO
2
, the correlation should also be strong between
HCHO and
Σ
ANs, and this relationship has previously been used to constrain the IN yield
when IN measurements were not available. For example, HCHO and
Σ
ANs measurements
from the 2004 ICARTT aircraft campaign showed moderate correlation with
r
∼
0.4-0.6
(
Perring et al., 2009a
;
Mao et al., 2013
). However, linking the HCHO-
Σ
ANs correlation to
the IN yield is complicated by the contribution to
Σ
ANs from other RONO
2
sources (e.g.,
monoterpene nitrates, anthropogenic nitrates, etc.). During SEAC
4
RS, a better constraint can
be obtained directly from the HCHO-IN relationship. Figure 9 shows the correlation
between HCHO and the sum of ISOPN, MVKN, and MACRN (we exclude PROPNN and
ETHLN to avoid the biases identified previously). The figure shows the observed slope of
0.027 (ppt IN) (ppt HCHO)
−1
is reproduced by the model but with more scatter in the
simulation (
r
∼
0.5) than in the observations (
r
∼
0.7). The similarity of the observed and
simulated relationships in Fig. 9 lends confidence to the IN mechanism used here, at least
for the
β
-peroxy channel.
4 Total alkyl and multifunctional nitrates (
Σ
ANs)
4.1 Speciated versus total RONO
2
SEAC
4
RS represents one of the first airborne campaigns to make measurements of
individual BVOC-derived RONO
2
species. Without these speciated measurements, previous
model evaluations of isoprene nitrate chemistry have relied on TD-LIF observations of
Σ
ANs (total RONO
2
), with the assumption that gas-phase INs account for the majority of
Σ
ANs (
Horowitz et al., 2007
;
Perring et al., 2009a
;
Mao et al., 2013
;
Xie et al., 2013
).
Figure 10a compares the TD-LIF
Σ
ANs measurement (solid line) to the sum of explicitly
measured gas-phase RONO
2
species and total pRONO
2
(dashed line, combined CIT-ToF-
CIMS, WAS, and AMS measurements) during SEAC
4
RS. The figure shows a large gap
between measured
Σ
ANs and the total of speciated RONO
2
(including both gas-phase and
aerosol contributions), especially near the surface (
Σ
ANs = 409 ppt, total speciated RONO
2
= 198 ppt). Figure 10a also shows the median surface
Σ
ANs measured during SOAS (198
ppt; black triangle). As for SEAC
4
RS, SOAS total speciated RONO
2
is much lower (82 ppt)
when calculated from the CIT-ToF-CIMS and AMS measurements. The gap is smaller, but
still exists, when calculated using ISOPN from the Purdue CIMS (total RONO
2
= 102 ppt)
or pRONO
2
from the TD-LIF (total RONO
2
= 139 ppt). An independent thermal
dissociation instrument operated by the SouthEastern Aerosol Research and Characterization
(SEARCH) Network also measured
Σ
ANs at the SOAS site and showed values that were 80
ppt higher than measured by the TD-LIF (but generally well correlated, with slope close to 1
and
r
∼
0.8).
Fisher et al.
Page 15
Atmos Chem Phys
. Author manuscript; available in PMC 2018 April 19.
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