Published November 1998 | Version public
Journal Article

Effects of pressure on the structure of metmyoglobin: Molecular dynamics predictions for pressure unfolding through a molten globule intermediate

  • 1. ROR icon California Institute of Technology
  • 2. ROR icon Universidade Federal do Espírito Santo
  • 3. ROR icon Federal University of Rio de Janeiro

Abstract

We investigated the pathway for pressure unfolding of metmyoglobin using molecular dynamics (MD) for a range of pressures (0. 1 MPa to 1. 2 GPa) and a temperature of 300 K. We find that the unfolding of metmyoglobin proceeds via a two‐step mechanism native → molten globule intermediate → unfolded, where the molten globule forms at 700 MPa. The simulation describes qualitatively the experimental behavior of metmyoglobin under pressure. We find that unfolding of the alpha‐helices follows the sequence of migrating hydrogen bonds (i, i + 4) → (i, i + 2).

Additional Information

© 1998 The Protein Society. Manuscript accepted: 01 July 1998; Manuscript received: 04 February 1998. This research was supported in part by grants from the Brazilian Agencies: Financiadora de Estudos e Projetos (FINEP), Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq) and Fundação de Amparo à Pesquisa do Estado do Rio de Janeiro (FAPERJ). It was also supported by a grant from DOE-OIT-BCTR (David Boron) and by NSF (CHE 95-12279). Additional support for the Materials Simulation Center (MSC) facilities came from the National Science Foundation (Grand Challenge Application Grant ASC 92-17368), DURIP (DAAG55-97-l-0140), Chevron Petroleum Technology Co., Asahi Chemical, Aramco, Owens-Corning, Exxon, Asahi Glass, Nippon Steel, Hercules, Avery Dennison, BP Chemical, and the Beckman Institute. Some calculations were carried out at the Illinois National Center for Supercomputing Applications (NCSA), funded by the National Science Foundation (NSF).

Additional details

Identifiers

PMCID
PMC2143858
Eprint ID
93288
Resolver ID
CaltechAUTHORS:20190227-084325988

Funding

Financiadora de Estudos e Projetos (FINEP)
Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)
Fundação de Amparo à Pesquisa do Estado do Rio de Janeiro (FAPERJ)
Department of Energy (DOE)
NSF
CHE 95-12279
NSF
ASC 92-17368
Army Research Office (ARO)
DAAG55-97-1-0140
Chevron Petroleum Technology Co.
Asahi Chemical
Aramco
Owens-Corning
Exxon
Asahi Glass
Nippon Steel
Hercules
Avery Dennison
BP Chemical
Caltech Beckman Institute

Dates

Created
2019-02-27
Created from EPrint's datestamp field
Updated
2021-11-16
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