global
-5.37
-1
0
1
control1_2
control1_3
control1_1
control2_2
control2_1
control2_3
Recovery1
Recovery2
Recovery3
HS1
HS2
HS3
ATI
Gene names
AT2G21660
RBG7
AT1G59870
ABCG36
AT4G34710
SPE2
AT2G44490
BGLU26
AT1G09780
PGM1
AT5G25610
RD22
AT4G20830
Q9SVG4-2
AT5G09440
EXL4
AT4G23270
CRK19
AT5G48380
Q9ASS4
AT1G24180
IAR4
AT5G64120
PER71
AT4G23190
CRK11
AT3G51550
FER
AT4G23180
CRK10
AT5G52310
LTI78
AT5G05170
CESA3
AT3G43300
BIG5
AT3G49910
RPL26A
AT1G79340
AMC4
AT2G13560
NAD-ME1
AT1G70520
CRK2
AT5G26751
ASK1
AT3G22330
RH53
AT5G47010
UPF1
AT4G32410
CESA1
AT5G49720
KOR
AT1G51500
ABCG12
AT4G00360
CYP86A2
AT2G26250
FDH
AT4G37870
PCKA
AT1G01120
KCS1
AT1G49430
LACS2
AT1G17840
ABCG11
AT3G57330
ACA11
AT2G32800
LECRKS2
AT3G22380
TIC
AT5G14640
ASK5
AT1G65930
CICDH
AT3G20250
APUM5
AT1G07720
KCS3
AT1G77180
SKIP
AT1G37130
NIA2
AT4G30340
DGK7
AT1G71040
LPR2
AT1G49600
RBP47A
AT3G22310
RH9
AT3G06850
BCE2
AT1G56070
T6H22.13
AT1G79090
At1g79090
AT3G15010
UBA2C
AT3G61050
T27I15_140
AT2G41560
ACA4
AT4G31180
At4g31180
AT1G35580
CINV1
AT4G34131
UGT73B3
AT4G38680
CSP2
AT4G38540
MO2
AT5G13010
EMB3011
AT4G35830
ACO1
AT4G26970
ACO3
AT3G11410
PP2CA
AT3G47340
ASN1
AT4G39090
RD19A
AT5G64440
FAAH
AT5G14920
GASA14
AT5G64570
BXL4
AT5G03280
EIN2
AT3G53870
RPS3B
AT4G33220
PME44
AT3G16530
Q9LK72
AT3G05970
LACS6
AT4G15900
PRL1
AT5G04590
SIR
AT5G19400
SMG7
AT5G64100
PER69
AT4G30170
PER45
AT5G06530
ABCG22
AT3G02360
Q9FWA3
AT2G46370
JAR1
AT1G54100
ALDH7B4
AT4G16760
ACX1
AT3G06980
RH50
AT5G67030
ZEP
AT3G16640
TCTP
AT2G46280
TIF3I1
AT3G48990
AAE3
AT2G41140
CRK1
AT2G18790
PHYB
AT1G64550
ABCF3
AT1G64190
Q9SH69
AT3G14990
DJ1A
AT4G17090
BAM3
AT4G32150
VAMP711
AT4G34110
PAB2
AT3G44320
NIT3
AT1G15690
AVP1
AT3G48560
ALS
AT1G23310
GGAT1
AT1G73120
T18K17.22
AT1G29900
CARB
AT1G25540
MED25
AT3G14440
NCED3
AT1G21400
Q9LPL5
AT1G02500
SAM1
AT1G04220
KCS17
AT2G05710
ACO2
AT4G39260
RBG8
AT1G47128
RD21A
AT2G17840
ERD7
AT4G35790
PLDDELTA
AT1G68530
CUT1
AT1G09770
CDC5
AT2G36530
ENO2
AT2G39770
CYT1
AT3G02540
RAD23C
AT5G60410
SIZ1
AT2G17420
NTR2
AT3G04880
DRT102
AT2G20360
Q9SK66
AT1G11350
SD113
AT1G04400
CRY2
AT3G58620
TTL4
AT2G25930
ELF3
AT2G39660
BIK1
AT5G23630
PDR2
AT2G19520
MSI4
AT1G53210
At1g53210
AT2G01140
FBA3
AT4G23650
CPK3
AT5G17920
MS1
AT4G37910
HSP70-9
AT5G63840
PSL5
AT1G35620
PDIL5-2
AT3G03050
CSLD3
AT1G28380
NSL1
AT1G10760
GWD1
AT1G53300
TTL1
AT2G18750
CBP60C
AT3G28450
LRR-RLK
AT5G44070
PCS1
AT3G05200
ATL6
AT4G04340
OSCA1
AT4G11850
PLDGAMMA1
AT1G03230
F15K9.16
AT2G38470
WRKY33
AT2G37220
CP29B
AT5G59970
At1g07660
AT4G31550
WRKY11
AT3G49530
NAC062
AT5G51820
PGMP
AT2G34930
At2g34930
AT5G04530
KCS21
AT5G47910
RBOHD
AT3G19420
PEN2
AT5G62390
BAG7
AT4G08920
CRY1
AT3G48090
EDS1
AT1G14870
PCR2
AT3G53110
RH38
AT1G11650
RBP45B
AT1G10170
NFXL1
AT3G23820
GAE6
AT1G76180
ERD14
AT4G38630
RPN10
AT4G11480
CRK32
AT2G31880
SOBIR1
AT4G29040
RPT2A
AT2G20580
RPN1A
AT2G26890
GRV2
AT4G35580
NTL9
AT1G15520
ABCG40
AT5G17820
PER57
AT5G43060
Q9FMH8
AT5G61780
Tudor2
AT5G44380
At5g44380
AT5G46760
MYC3
AT1G71695
PER12
AT3G19130
RBP47B
AT5G45510
Q8VZC7-2
AT3G01420
DOX1
AT3G19760
RH2
AT1G70850
MLP34
AT1G77760
NIA1
AT5G22060
ATJ2
AT4G01050
STR4
AT1G29690
CAD1
AT3G12580
MED37C
AT5G48570
FKBP65
AT3G07770
Hsp89.1
AT1G16030
HSP70-5
AT1G74310
CLPB1
AT3G25230
ROF1
AT5G09590
HSP70-10
AT5G52640
HSP90-1
AT2G46500
PI4KG4
AT3G12050
T21B14.13
AT4G24280
HSP70-6
AT3G08970
ERDJ3A
AT5G63790
NAC102
AT4G23670
F9D16.140
AT1G20620
CAT3
AT3G23990
CPN60
AT1G07890
APX1
AT5G15450
CLPB3
AT4G12400
HOP3
AT3G26450
At3g26450
AT2G46240
BAG6
AT4G25130
MSR4
AT5G10860
CBSX3
AT3G22370
AOX1A
AT2G22240
IPS2
AT5G66570
PSBO1
AT2G39730
RCA
AT5G08280
HEMC
AT5G20720
CPN21
AT2G33800
rps5
AT3G04120
GAPC1
AT2G27020
PAG1
AT1G17290
ALAAT1
AT2G40140
Q9XEE6
AT5G60600
ISPG
AT3G54050
FBP
AT3G57530
CPK32
AT1G80840
WRKY40
AT3G09440
HSP70-3
AT5G02490
MED37D
AT5G49910
HSP70-7
AT4G37930
SHM1
AT3G12780
PGK1
AT1G76680
OPR1
AT3G56240
CCH
AT1G67090
RBCS-1A
AT3G55440
CTIMC
AT3G46620
F12A12.140
AT1G48410
AGO1
AT3G53280
CYP71B5
AT3G52960
PRXIIE
AT5G01750
Q9LZX1-2
AT1G71860
PTP1
AT1G11910
APA1
AT1G53750
RPT1A
AT5G19990
RPT6A
AT4G34000
ABF3
AT3G52400
SYP122
AT1G04410
MDH1
AT5G06320
NHL3
AT3G26650
GAPA1
AT1G56450
PBG1
AT2G47730
GSTF8
AT3G53260
PAL2
AT5G58090
Q93Z08
AT3G26520
TIP1-2
AT3G16460
JAL34
AT3G23000
CIPK7
AT2G42580
TTL3
AT5G57560
XTH22
AT5G54770
THI1
AT1G20020
LFNR2
AT4G37370
F6G17.20
AT5G57220
CYP81F2
AT1G08930
ERD6
AT5G02500
MED37E
AT4G39640
GGT1
AT5G56030
HSP90-2
AT5G28540
MED37A
AT1G20510
4CLL5
AT1G62380
ACO2
AT4G38580
HIPP26
AT2G41430
ERD15
AT2G22300
CMTA3
AT5G66190
LFNR1
AT3G50930
BCS1
AT5G54810
TSB1
AT1G50500
VPS53
AT1G09750
F21M12.13
AT5G11150
VAMP713
AT4G30440
GAE1
AT1G20450
ERD10
AT2G17870
CSP3
AT4G23100
GSH1
AT3G01290
HIR3
AT4G01370
MPK4
AT4G31300
PBA1
AT1G55920
SAT1
AT1G30580
T5I8.3
AT1G55490
CPN60B1
AT3G14310
PME3
AT1G79440
ALDH5F1
AT1G03680
O48737
AT5G19690
STT3A
AT2G43430
GLX2-1
AT1G27320
AHK3
AT3G30775
POX1
AT2G38530
LTP2
AT3G09260
BGLU23
AT5G09810
ACT7
AT5G19510
Q9SCX3
AT1G05010
ACO4
AT4G11150
VHA-E1
ATCG00020
psbA
AT1G79210
PAB2
AT1G18260
HRD3A
AT5G14040
MPT3
AT1G51980
At1g51980
AT1G68010
HPR
AT3G53420
PIP2-1
AT3G47470
LHCA4
AT2G33150
PED1
AT3G17800
At3g17800
AT2G32120
HSP70-8
AT4G33680
DAP
AT2G36460
At2g36460
AT3G01500
BCA1
AT5G35630
GLN2
AT3G52930
F8J2_100
AT1G09340
CSP41B
AT1G76080
CDSP32
AT2G29500
HSP17.6B
AT4G27670
HSP25.3
AT3G03710
PNP1
AT4G38740
CYP18-3
AT3G55800
P46283
AT3G57520
RFS2
AT3G23400
PAP6
AT1G42970
GAPB
AT1G78900
VHA-A
AT4G14030
SBP1
AT3G05530
RPT5A
AT5G06760
LEA4-5
AT4G35090
CAT2
AT5G16970
P1
AT5G01410
PDX13
AT1G12110
NPF6.3
AT2G25140
CLPB4
AT5G55070
Q9FLQ4
AT1G07400
HSP17.8
AT1G32060
P25697
AT1G53240
mMDH2
AT2G18960
AHA1
AT5G03630
Q93WJ8
AT3G54470
PYRE-F
AT4G24290
Q9STW5
AT3G16450
JAL33
AT3G16857
ARR1
AT1G06680
PSBP1
AT5G50850
PDH2
AT5G27600
LACS7
AT5G64750
ABR1
AT3G09350
Fes1A
AT4G26080
ABI1
AT2G33340
PRP19B
AT1G32640
MYC2
AT5G22500
FAR1
AT5G42650
CYP74A
AT4G03550
CALS12
AT5G07440
GDH2
AT5G18170
GDH1
AT3G17390
METK4
AT3G09200
RPP0B
AT4G39980
DHS1
AT1G09020
SNF4
AT2G05940
At2g05940
E. Proteins with annotation ‘stress response’
Log2 ratio
AGI
Supplemental Figure S2:
Heat maps
show nascent protein expression
patterns across conditions. To be
included in the heat map, proteins
had to be quanti
!
ed in at least two
control samples and two “treated”
samples (either heat shock or
recovery). Relative protein
expression was normalized
individually for each protein so
that the average control
expression (across control
series 1 and series 2) was zero.
Along the x-axis, control series
1, control series 2, heat shock
samples and recovery samples
form hierarchical clusters
indicating that biological
replicates are similar.
A.
All
identi
!
ed proteins that
match the quantitation
criteria above.
B.
Proteins
with ANOVA p-values
< 0.01.
C.
Proteins with GO
annotation ‘response to
heat.’
D.
Proteins regulated
by heat stress (p-value
< 0.01; heat shock samples
compared to control
series 2)
E.
Proteins with
GO annotation ‘stress
response.’