StarQualityMetric
total RNA-seq, microRNA-seq
% of chimeric reads
STAR % of chimeric reads
% of reads mapped to multiple loci
STAR % of reads mapped to multiple loci
% of reads mapped to too many loci
STAR % of reads mapped to too many loci
% of reads unmapped: other
STAR % of reads unmapped: other
% of reads unmapped: too many mismatches
STAR % of reads unmapped: too many mismatches
% of reads unmapped: too short
STAR % of reads unmapped: too short
Average input read length
STAR Average input read length
Average mapped length
STAR Average mapped length
Deletion average length
STAR Deletion average length
Deletion rate per base
STAR Deletion rate per base
Insertion average length
STAR Insertion average length
Insertion rate per base
STAR Insertion rate per base
Mapping speed, Million of reads per hour
STAR Mapping speed, Million of reads per hour
Mismatch rate per base, %
STAR Mismatch rate per base, %
Number of chimeric reads
STAR Number of chimeric reads
Number of input reads
STAR Number of input reads
Number of reads mapped to multiple loci
STAR Number of reads mapped to multiple loci
Number of reads mapped to too many loci
STAR Number of reads mapped to too many loci
Number of splices: AT/AC
STAR Number of splices: AT/AC
Number of splices: Annotated (sjdb)
STAR Number of splices: Annotated (sjdb)
Number of splices: GC/AG
STAR Number of splices: GC/AG
Number of splices: GT/AG
STAR Number of splices: GT/AG
Number of splices: Non-canonical
STAR Number of splices: Non-canonical
Number of splices: Total
STAR Number of splices: Total
Uniquely mapped reads %
STAR Uniquely mapped reads %
Uniquely mapped reads number
STAR Uniquely mapped reads number
read_depth
Sum of the uniquely mapped reads number and the number of reads mapped to multiple loci.
GeneQuantificationQualityMetric
total RNA-seq
number_of_genes_detected
Number of Genes Detected
GeneTypeQuantificationQualityMetric
total RNA-seq
Mt_rRNA
Number of reads assigned to transcripts from the \"Mt_rRNA\" GENCODE biotype; mitochondrial rRNAs
antisense
Number of reads in transcripts that overlap the genomic span (i.e. exon or introns) of a protein-coding locus on the opposite strand.
miRNA
Number of reads assigned to transcripts from the \"miRNA\" GENCODE biotype; microRNAs
processed_transcript
Number of reads mapped to genomic regions which don't contain an ORF.
protein_coding
Number of reads assigned to transcripts from the \"protein_coding\" GENCODE biotype; contain ORFs
rRNA
Number of reads assigned to transcripts from the \"rRNA\" GENCODE biotype; encode for rRNAs
ribozyme
Number of reads assigned to transcripts from the \"ribozyme\" GENCODE biotype; encode for ribozymes
sRNA
Number of reads assigned to transcripts from the \"sRNA\" GENCODE biotype; encode for sRNAs
scaRNA
Number of reads assigned to transcripts from the \"scaRNA\" GENCODE biotype; encode for scaRNAs
sense_intronic
Number of reads in long non-coding transcript in introns of a coding gene that does not overlap any exons.
sense_overlapping
Number of reads in long non-coding transcript that contains a coding gene in its intron on the same strand.
snRNA
Number of reads assigned to transcripts from the \"snRNA\" GENCODE biotype; encode for snRNAs
snoRNA
Number of reads assigned to transcripts from the \"snoRNA\" GENCODE biotype; encode for snoRNAs
spikein
Number of reads assigned to transcripts from the spike ins
MadQualityMetric
total RNA-seq
SD of log ratios
Standard Deviation of replicate log ratios from quantification
Pearson correlation
Pearson correlation coefficient of replicates from quantification
Spearman correlation
Spearman correlation coefficient of replicates from quantification
MAD of log ratios
Mean-Average-Deviation (MAD) of replicate log ratios from quantification
MicroRnaMappingQualityMetric
microRNA-seq
aligned_reads
Number of aligned reads
MicroRnaQuantificationQualityMetric
microRNA-seq
expressed_mirnas
Number of miRNAs expressed
LongReadRnaMappingQualityMetric
long read RNA-seq
full_length_non_chimeric_read_count
Quantity of reads that are full-length and do not contain a chimeric adaptor arrangement.
mapping_rate
Proportion of reads mapping to the genome
LongReadRnaQuantificationQualityMetric
long read RNA-seq
genes_detected
Number of GENCODE genes detected for the replicate