of 8
Atmos. Meas. Tech., 9, 4561–4568, 2016
www.atmos-meas-tech.net/9/4561/2016/
doi:10.5194/amt-9-4561-2016
© Author(s) 2016. CC Attribution 3.0 License.
Investigation of a potential HCHO measurement
artifact from ISOPOOH
Jason M. St. Clair
1,2
, Jean C. Rivera-Rios
6
, John D. Crounse
4
, Eric Praske
5
, Michelle J. Kim
4
, Glenn M. Wolfe
1,2
,
Frank N. Keutsch
3,6
, Paul O. Wennberg
4,7
, and Thomas F. Hanisco
1
1
Atmospheric Chemistry and Dynamics Laboratory, NASA Goddard Space Flight Center, Greenbelt, MD 20771, USA
2
Joint Center for Earth Systems Technology, University of Maryland Baltimore County, Baltimore, MD 21228, USA
3
Department of Chemistry, University of Wisconsin-Madison, Madison, WI 53706, USA
4
Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA 91125, USA
5
Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA 91125, USA
6
Paulson School of Engineering and Applied Sciences and Department of Chemistry and Chemical Biology, Harvard
University, Cambridge, MA 02138, USA
7
Division of Engineering and Applied Science, California Institute of Technology, Pasadena, CA 91125, USA
Correspondence to:
Jason M. St. Clair (jason.m.stclair@nasa.gov)
Received: 13 June 2016 – Published in Atmos. Meas. Tech. Discuss.: 16 June 2016
Revised: 12 August 2016 – Accepted: 15 August 2016 – Published: 16 September 2016
Abstract.
Recent laboratory experiments have shown that
a first generation isoprene oxidation product, ISOPOOH,
can decompose to methyl vinyl ketone (MVK) and
methacrolein (MACR) on instrument surfaces, leading
to overestimates of MVK and MACR concentrations.
Formaldehyde (HCHO) was suggested as a decomposition
co-product, raising concern that in situ HCHO measure-
ments may also be affected by an ISOPOOH interference.
The HCHO measurement artifact from ISOPOOH for the
NASA In Situ Airborne Formaldehyde instrument (ISAF)
was investigated for the two major ISOPOOH isomers,
(1,2)-ISOPOOH and (4,3)-ISOPOOH, under dry and hu-
mid conditions. The dry conversion of ISOPOOH to HCHO
was 3
±
2 % and 6
±
4 % for (1,2)-ISOPOOH and (4,3)-
ISOPOOH, respectively. Under humid (relative humidity
of 40–60 %) conditions, conversion to HCHO was 6
±
4 %
for (1,2)-ISOPOOH and 10
±
5 % for (4,3)-ISOPOOH. The
measurement artifact caused by conversion of ISOPOOH to
HCHO in the ISAF instrument was estimated for data ob-
tained on the 6 September 2013 flight of the Studies of
Emissions and Atmospheric Composition, Clouds and Cli-
mate Coupling by Regional Surveys (SEAC
4
RS) campaign.
Prompt ISOPOOH conversion to HCHO was the source of
< 4 % of the observed HCHO, including in the high-isoprene
boundary layer. Time-delayed conversion, where previous
exposure to ISOPOOH affects measured HCHO later in the
flight, was conservatively estimated to be < 10 % of observed
HCHO, and is significant only when high ISOPOOH sam-
pling periods immediately precede periods of low HCHO.
1 Introduction
Formaldehyde (HCHO) in the atmosphere is predominantly
a product of the gas-phase oxidation of volatile organic com-
pounds (VOCs). Oxidation of methane produces a global
background of HCHO that accounts for
80 % of the global
HCHO production (Fortems-Cheiney et al., 2012). The emis-
sions of non-methane hydrocarbons (NMHCs), such as iso-
prene and its oxidation products, are more localized and
create spatial heterogeneity in HCHO production due to
their shorter atmospheric lifetime. HCHO is one of the few
VOCs that can be measured from orbit (e.g., Chance et al.,
2000), and is used to estimate global isoprene emissions from
space (Marais et al., 2012; Millet et al., 2008; Palmer et al.,
2003, 2006). Thus, accurate in situ HCHO measurements in
isoprene-rich environments are crucial for refining our un-
derstanding of biogenic emissions and chemistry (Kaiser et
al., 2015; Wolfe et al., 2016).
Published by Copernicus Publications on behalf of the European Geosciences Union.
4562
J. M. St. Clair et al.: Potential HCHO measurement artifact from ISOPOOH
Measurements
of
the
major
first-generation
NO-
dominated isoprene oxidation products, methyl vinyl
ketone (MVK) and methacrolein (MACR), are frequently
used in combination with isoprene measurements to un-
derstand biogenic oxidative environments (e.g., Karl et
al., 2007). The instrumental techniques used to measure
MVK and MACR, e.g., proton transfer reaction-mass spec-
trometry (PTR-MS) and gas chromatography (GC), have
recently been shown to convert the major first-generation
HO
2
-dominated isoprene oxidation product, isoprene hy-
droxyhydroperoxides (ISOPOOH), into MVK or MACR
with varying yields (Liu et al., 2013; Rivera-Rios et al.,
2014). Conversion of ISOPOOH to MVK/MACR likely
occurs via cleavage of the peroxy bond, and is catalyzed
by metal surfaces in instrument gas sampling systems
(Rivera-Rios et al., 2014). The alkoxy radicals generated
from breaking the peroxy bond subsequently decompose,
in the presence of O
2
, to MVK (from (1,2)-ISOPOOH) or
MACR (from (4,3)-ISOPOOH), HCHO, and HO
2
. Figure 1
shows the two major isomers of ISOPOOH and the observed
hydrocarbon products of their instrument surface-mediated
decomposition.
The equivalent amount of HCHO produced with
MVK/MACR has led to some concern in the community that
ISOPOOH causes a measurement artifact in HCHO instru-
ments. The degree of conversion will be highly dependent
on instrument configuration, including the nature of exposed
surfaces, gas temperatures, and flow rates. This study was
conducted to investigate the potential HCHO measurement
interference from ISOPOOH for the NASA ISAF (In Situ
Airborne Formaldehyde) HCHO instrument (Cazorla et al.,
2015). The design of the ISAF instrument minimizes sam-
ple volume to maximize the instrument time response, and
the small volume also minimizes surface area available for
ISOPOOH conversion to HCHO. In addition, most exposed
surfaces in the sample inlet and instrument are either fluo-
ropolymer (PFA tubing) or coated in fluoropolymer (Fluoro-
Pel, Cytonix). Results for the Harvard formaldehyde instru-
ment (DiGangi et al., 2011; Hottle et al., 2009) will be pub-
lished separately as part of a larger study (FIXCIT/SOAS).
Experiments were conducted for both major ISOPOOH
isomers, (1,2)-ISOPOOH and (4,3)-ISOPOOH, under both
dry and humid conditions. The influence of inlet temperature
and the composition of exposed surfaces were also investi-
gated. A slow HCHO time constant, unique to the ISOPOOH
conversion experiments and caused by the experimental con-
ditions, is discussed. Finally, the experimental results for
ISOPOOH conversion to HCHO and the laboratory time con-
stant are discussed in the context of data from the Studies of
Emissions and Atmospheric Composition, Clouds and Cli-
mate Coupling by Regional Surveys (SEAC
4
RS) campaign
(Toon et al., 2016).
OH
OOH
OH
OOH
(1,2)
(4,3)
O
O
MVK
MACR
S
urface
S
urface
+O
2
+HCHO
+HCHO
+O
2
Figure 1.
The major isomers of ISOPOOH and the observed hy-
drocarbon products of their instrument surface-mediated decom-
position: methacrolein (MACR), methyl vinyl ketone (MVK), and
formaldehyde (HCHO).
Table 1.
List of experiments.
Experiment
Compound
Description
E1
(1,2)-ISOPOOH
Dry
E2
(1,2)-ISOPOOH
Dry, with and with-
out untreated stain-
less tubing
E3
(1,2)-ISOPOOH
Dry, ISAF inlet tu-
bing temperature
E4
(4,3)-ISOPOOH
Dry, with untreated
stainless tubing
E5
(4,3)-ISOPOOH
Dry
E6
(4,3)-ISOPOOH
Dry, ISAF inlet tu-
bing temperature
E7
(1,2)-ISOPOOH
Humid
E8
(4,3)-ISOPOOH
Humid
E9
(4,3)-ISOPOOH
Dry
E10
(1,2)-ISOPOOH
Dry
2 Experimental
In total, 10 experiments were conducted and are listed
in Table 1. Experiments were performed for both ma-
jor ISOPOOH isomers, (1,2)-ISOPOOH (ISOPBOOH) and
(4,3)-ISOPOOH (ISOPDOOH), which were synthesized for
these experiments (Rivera-Rios et al., 2014). Sample purity,
as determined by nuclear magnetic resonance spectroscopy,
was 78 % for 1,2 ISOPOOH and 89 % for 4,3 ISOPOOH,
with water, H
2
O
2
, and diethyl ether as the main impurities.
For each isomer, two dry air ISOPOOH to HCHO conver-
sion experiments and one humid air conversion experiment
were performed. The effect of temperature and tubing mate-
rial was investigated for each isomer with two experiments
for each, one with varied ISAF inlet tubing temperatures and
one with varied bare stainless steel tubing temperatures.
All experiments were conducted using a
1 m
3
fluori-
nated ethylene propylene chamber. ISOPOOH was intro-
duced into the chamber by flowing 20 standard liters per
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J. M. St. Clair et al.: Potential HCHO measurement artifact from ISOPOOH
4563
minute (sL min
1
) of dry air over droplets of ISOPOOH for
10–30 min, and the remaining chamber volume was filled
with dry air. The sampling setup is shown in Fig. 2. A sample
line (6.35 mm OD PFA) connects the chamber to the instru-
ments, with the sample flow determined by the sum of the
individual instrument sample flows (
10 sL min
1
typical).
Two Caltech Chemical Ionization Mass Spectrometers (CIT-
CIMS) instruments provided measurements of ISOPOOH
(Crounse et al., 2006; Paulot et al., 2009; St. Clair et al.,
2010; Nguyen et al., 2015), and the ISAF instrument (Ca-
zorla et al., 2015) measured HCHO.
The ISAF flight inlet (Cazorla et al., 2015) was repre-
sented in the lab experiments by a 30.5 cm length of 6.35 mm
OD silica-steel tubing (Fig. 2, item B) coated with a fluo-
ropolymer (FluoroPel, Cytonix) and attached to a thermally
controlled piece of aluminum using thermal epoxy. The
equivalent tubing in the NASA DC-8 ISAF inlet is heated
by two zones of heaters, each controlled by a thermostat:
the first zone is controlled to 43–54
C (Honeywell 3100U-
31440) and the second zone is controlled to 27–38
C (Hon-
eywell 3100U-31437). The thermostats are mounted on two
aluminum blocks that enclose and heat the inlet tubing; the
inlet tubing and the sample flow are likely cooler than the
control temperature. For the lab tests, a Minco heater con-
troller (model CT325) provided variable and stable control
temperatures, and a thermistor on the aluminum piece pro-
vided the temperature. In flight, flow rates through the DC-
8 inlet are 10–25 sL min
1
, with
2.5 sL min
1
of the total
inlet flow subsampled by the instrument. During these exper-
iments, the large inlet flow was not possible due to limited
chamber volume. All of the inlet flow passed through the in-
strument and ranged from 3 to 7 sL min
1
.
All experiments started with dry air flowing through the
sample line to measure the background level of ISOPOOH
and HCHO. Typical background mixing ratios were 120 and
150 pptv, respectively, and were influenced by recent exper-
iments and sample tubing flushing time. For humid experi-
ments, the dry background was followed by a humid back-
ground where the air was humidified by passing the dry air
through a water bubbler. Because of dissolved trace HCHO
in the liquid water and possible wall exchange effects, the
background HCHO was typically higher under humid condi-
tions than dry conditions by
40–100 pptv. Any background
HCHO that originated from a source other than the dry or hu-
mid air (e.g., from the ISOPOOH sample) was not accounted
for and would bias the conversion rate high. After obtain-
ing a background measurement, the instruments sampled the
chamber air diluted by dry (or humid) air provided by a mass
flow controller as shown in Fig. 2. By varying the amount of
air provided by the flow controller, the instruments sampled
multiple [ISOPOOH] from the same chamber fill.
The effect of ISAF inlet temperature on ISOPOOH con-
version to HCHO was investigated by setting the inlet tube
to multiple temperatures with a constant [ISOPOOH] and
observing the change in measured HCHO. To demonstrate
TQ-
CIMS
T
oF-
CIMS
ISAF
HCHO
~1 m
3
chamber
6.35 mm OD PF
A sample line
A
B
contr
oller
Figure 2.
Experimental setup. During experiments with untreated
stainless tubing, the sample line passed through the tubing (item A)
before proceeding to the instruments. The ISAF inlet tubing loca-
tion is noted by item B.
the potential for heated, untreated stainless steel to convert
ISOPOOH to HCHO, another set of experiments was con-
ducted where the sampling line from the chamber included
a 15.4 cm section of 6.35 mm OD stainless steel tubing held
inside a GC oven. The untreated tubing was in-line between
the chamber and the instruments (Fig. 2, item A).
3 Results and discussion
3.1 Treatment of pre-instrument ISOPOOH to HCHO
conversion
The HCHO data at the beginning of each conversion ex-
periment contain a rapid increase followed by a multi-
exponential decay. The ISOPOOH data exhibit a comple-
mentary time response such that if the HCHO decay is added
to the ISOPOOH data, the result is a sharp transition from
the background measurement to the final ISOPOOH mixing
ratio. We infer that this represents a possible ISOPOOH to
HCHO conversion upstream of the instruments and a cor-
rection should be applied to improve the calculation of the
conversion rate within the ISAF instrument.
The HCHO data for the first ISOPOOH mixing ratio of
each experiment were fit with a three-term multi-exponential
function to determine the appropriate time constants. The
function (Eq. 1) is as follows.
Function
=
A
1
×
exp
(
t/τ
1
)
+
A
2
×
exp
(
t/τ
2
)
+
A
3
×
exp
(
t/τ
3
)
+
c.
(1)
All fits were constrained to require positive values for all
fit parameters, and the data for post-experiment zero data
could not be negative after subtraction of the decay fit. These
constraints were imposed to prevent the fit from using one
term from offsetting a nonphysical value for another. The
data were then fit using the selected three time constants
(100, 800, 2000 s) to obtain the best pre-exponential terms
to describe all of the experiments. The final fit was con-
ducted with the ratio of the first three pre-exponential terms
fixed relative to each other:
A
1
=
A
2
and
A
3
=
0.25
×
A
1
.
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4564
J. M. St. Clair et al.: Potential HCHO measurement artifact from ISOPOOH
Table 2.
Conversion Fraction of ISOPOOH to HCHO in ISAF.
Room temperature
Conversion
Estimated
measurements
fraction
uncertainty*
(1,2)-ISOPOOH, dry
0.03
0.04
(4,3)-ISOPOOH, dry
0.06
0.03
(1,2)-ISOPOOH, humid
0.06
0.02
(4,3)-ISOPOOH, humid
0.10
0.04
* The uncertainty was conservatively estimated using data without
applying the pre-instrument conversion correction. The ratio of the HCHO
data/ISOPOOH data, both background-subtracted, was plotted for each
experiment. The highest value of the ratio, taken as a mean for each data
section selected for the conversion fits (red dots in Fig. 3, top panel), was
determined for each experiment and was averaged if there were two of that
experiment type. For the dry experiments, the uncertainty was set to the
difference between the highest value and the fit value. For the humid
experiments, the uncertainty was taken as twice the difference.
Two variables were optimized:
A
1
and
c
. The goal of the
preceding steps was to obtain a three-term exponential func-
tion that would reasonably describe the data from multiple
experiments by fitting a single scaling factor (representing
[ISOPOOH] at
t
=
0) and a constant (representing a back-
ground). The ISOPOOH and HCHO used hereafter have the
decay fit added and subtracted, respectively, from the origi-
nal data. Figure S1 in the Supplement shows the effect of the
correction on experiment E7 data as an example. Two exper-
iments were not corrected for pre-instrument conversion: E5
and E10. Experiment E5 did not require this correction be-
cause it was a continuation of another experiment (E4) and
so did not exhibit the same decay. E10 was excluded because
HCHO data for the first set point were close to stable before
the ISOPOOH concentration was changed, and the correc-
tion applied to the other experiments would be larger than
the E10 data warrant.
3.2 Conversion under dry conditions
Two experiments for each of the ISOPOOH isomers (E1 and
E10 for (1,2)-ISOPOOH; E5 and E9 for (4,3)-ISOPOOH)
were conducted under dry conditions, and the results are
listed in Table 2. Figure 3 shows the HCHO time series for
one (1,2)-ISOPOOH experiment, as well as the linear regres-
sion of HCHO and ISOPOOH for the two experiments. The
background signal for both species was subtracted from the
data in all regression plots. The regressions give
3 % con-
version of (1,2)-ISOPOOH to HCHO under dry conditions
for both experiments’ fit separately and as one data set. The
equivalent plots for (4,3)-ISOPOOH are shown in Fig. S2.
For (4,3)-ISOPOOH, the fits for the two experiments differ
significantly, with one experiment giving
4 % conversion
and the second giving
7 % conversion. The second conver-
sion experiments followed a humid experiment, and the pro-
longed exposure of surfaces to water vapor may have affected
the subsequent conversion efficiency despite the sample line
being purged with dry air for
30 min in between experi-
UTC
HCHO (ppbv)
0
0.2
0.4
0.6
0.8
1
All data
Selected for fit
Background
01:16
01:36
02:00
02:24
02:48
(1,2)-ISOPOOH (ppbv)
HCHO (ppbv)
0
0.2
0.4
0.6
0.8
E1
E10
E1 fit: 0.024 x [ISOPOOH] +0.02
E10 fit: 0.031 x [ISOPOOH] +0.15
Combined fit: 0.028 x [ISOPOOH] +0.08
0
5
10
15
20
Figure 3.
Top panel: time series of dry air conversion experiment
E10 with (1,2)-ISOPOOH at three ISOPOOH mixing ratios. Bot-
tom panel: linear fits to experiments E1 (dashed blue line) and E10
(dashed red line) individually and together (solid black line).
ments. The conversion of (4,3)-ISOPOOH to HCHO under
dry conditions is estimated to be
6 %.
3.3 Conversion under humid conditions
One experiment for each ISOPOOH isomer was conducted
under humid conditions to evaluate the influence of water
vapor on ISOPOOH conversion to HCHO. The results are
displayed in Table 2, and the data from the (1,2)-ISOPOOH
(E7) and (4,3)-ISOPOOH (E8) experiments are shown in
Figs. S3 and S4, respectively. Relative humidity was
60 %
for E7 and
40 % for E8, and was determined using the CIT-
CIMS CF
3
O
two-water-cluster signal (
m/z
=
121). The
conversion rate under humid conditions is higher than under
dry conditions, and the HCHO–ISOPOOH relationship is not
linear over the range of [ISOPOOH]. One possible cause of
the nonlinearity is that the conversion process becomes sat-
urated with respect to ISOPOOH at higher [ISOPOOH]. If
saturation is occurring, the conversion rate relevant to field
operation will be the higher rate obtained from the lower
[ISOPOOH] data. Because of the uncertainty related to the
higher background, surface equilibration, and nonlinearity,
the estimated uncertainty for the ISOPOOH conversion frac-
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J. M. St. Clair et al.: Potential HCHO measurement artifact from ISOPOOH
4565
Temperature (°C)
Conversion fraction
0
0.2
0.4
0.6
0.8
1
16 ppb (1,2) ISOPOOH, bare stainless
28 ppb (4,3) ISOPOOH, bare stainless
16 ppb (1,2) ISOPOOH, no bare stainless
18 ppb (1,2) ISOPOOH, heated ISAF inlet
15 ppb (4,3) ISOPOOH, heated ISAF inlet
20
40
60
80
100
120
140
160
Figure 4.
Temperature dependence of ISOPOOH conversion to
HCHO for the ISAF inlet and untreated stainless steel tubing. Data
shown with symbols (E2, E4) are mean values, and data shown with
lines (E3, E6) are 5
C wide binned mean values.
tion is higher for the humid experiments than the dry experi-
ments. Using the lower [ISOPOOH] data where the relation-
ship is linear, the (1,2)-ISOPOOH conversion to HCHO is
determined to be 6 %, and for (4,3)-ISOPOOH it is 10 %.
3.4 Temperature dependence of conversion
The effect of tubing temperature on ISOPOOH conversion to
HCHO was evaluated for an ISAF inlet tubing proxy and for
untreated stainless steel tubing. The data for both sets of ex-
periments are displayed in Fig. 4. The inlet tubing was heated
to multiple temperature set points, including near the upper
limit of the thermostats that control the inlet heaters during
flight (54
C). The data indicated no discernable temperature
dependence of ISOPOOH to HCHO conversion for either
ISOPOOH isomer. A section of untreated stainless steel tub-
ing was heated to much higher temperatures to demonstrate
the potential for ISOPOOH conversion on heated, untreated
metal surfaces. The conversion fraction for a given temper-
ature was also found to be a function of the gas-tubing con-
tact time, determined by the length of exposed tubing and
the sample flow rate, and should not be taken as quantita-
tively applicable to other configurations. Room temperature
conversion rates for (4,3)-ISOPOOH were not significantly
higher with the untreated stainless tubing in place than the
experiments (Table 2) without it. At elevated temperatures,
however, the conversion fraction steadily increased, reaching
50 % conversion for (1,2)-ISOPOOH at 160
C.
UTC
Mi
xing ratio (ppbv)
0
2
4
6
8
% of HCHO
from conversion
0
2
4
Al
titude (km)
0
10
20
17:00
19:00
21:00
23:00
UTC
ISAF HCHO
ISOPOOH
HCHO from ISOPOOH
17:00
19:00
21:00
23:00
Figure 5.
SEAC
4
RS flight on 6 September 2013. Top panel: time
series of ISAF HCHO (black line), CIT ISOPOOH (blue line), and
potential HCHO signal from prompt ISOPOOH conversion (red
line). Bottom panel: percent of the HCHO observed that might be
from prompt ISOPOOH conversion (red line) and aircraft altitude
(black line).
3.5 Instrument time constant
The inherent HCHO time response of the ISAF instrument is
rapid, measured as 0.19 s in the lab (Cazorla et al., 2015).
The equilibration time indicated in the conversion experi-
ments is considerably longer, though the time constants in
the correction term described in Sect. 3.1 removed some of
the equilibration time. During the conversion experiments,
the ISAF instrument was exposed to ISOPOOH mixing ra-
tios that are
10 times higher than those present in the real
atmosphere. Due to small conversion efficiencies, such high
levels of ISOPOOH were necessary for discriminating signal
changes over the chamber background. The high ISOPOOH
levels, however, thoroughly coated the surface sites in the in-
strument that convert ISOPOOH to HCHO to a degree that is
not relevant to the atmosphere, and resulted in a longer term
HCHO source from ISOPOOH conversion that is unlikely to
represent the instrument response in the real atmosphere. The
potential interference from this time constant is nonetheless
investigated in the following section.
3.6 Insight from SEAC
4
RS for conversion and time
constant importance
The Studies of Emissions and Atmospheric Composi-
tion, Clouds and Climate Coupling by Regional Surveys
(SEAC
4
RS) campaign included flight tracks over the Ozark
Mountains to sample an isoprene-rich, low-NO
x
region. Fig-
ure 5 shows data from the SEAC
4
RS flight (6 Septem-
ber 2013) with some of the highest ISOPOOH mixing ra-
tios of the campaign. In the top panel, ISAF HCHO and
CIT ISOPOOH data are plotted as a time series along with
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Atmos. Meas. Tech., 9, 4561–4568, 2016
4566
J. M. St. Clair et al.: Potential HCHO measurement artifact from ISOPOOH
the possible HCHO from ISOPOOH conversion, assuming
a conservative 8 % prompt conversion rate. The percentage
of the ISAF HCHO measurement that is potentially from
prompt ISOPOOH conversion is shown in the bottom panel
and does not exceed 4 % of the measured HCHO. For com-
parison, the stated calibration accuracy of ISAF is
±
10 %.
The conversion percent was set to zero for ISOPOOH values
of
80 pptv to improve figure clarity.
While prompt conversion of ISOPOOH to HCHO was
shown to have a negligible impact on the HCHO measure-
ment, a transition from a high ISOPOOH, high HCHO, sam-
pling environment to a low HCHO environment may result
in a greater fractional influence of ISOPOOH conversion on
measured HCHO, if a significant amount of ISOPOOH con-
version continues after leaving the boundary layer. To il-
lustrate the potential effects of delayed ISOPOOH conver-
sion to HCHO on field data, a section of the SEAC
4
RS 6
September 2013 flight was selected where the aircraft rapidly
ascended from an isoprene-rich boundary layer up to over
12 km (Fig. 6, bottom panel). The HCHO transitioned from
4 ppbv to as low as
100 pptv, and ISOPOOH decreased
from peaks of
1.3 ppbv to
0 pptv (Figs. 5 and 6, top pan-
els).
The instrument response to a rapid decrease in ISOPOOH
and HCHO mixing ratios was modeled using the end of Ex-
periment E8, where the sample line source was transferred
from the chamber to clean humid air and subsequently to dry
air. The decay of the HCHO signal was first normalized to
the initial mixing ratio so that at time
=
0, HCHO
=
1. The
sample line response was then removed from the fractional
HCHO decay by subtracting the fractional ISOPOOH decay,
which was assumed to be representative of the sample line
response. The remaining fractional HCHO decay represents
only the instrument response.
The modeled long-term HCHO source from ISOPOOH
conversion is shown in Fig. 6, top panel. The HCHO de-
cay started at a time of 20:34:55 UTC, which was chosen
to coincide with the rapid drop in ambient HCHO mixing
ratio. The fractional decay of the HCHO from ISOPOOH
conversion from Experiment E8 was applied to the in situ
data, with the starting value of the in situ HCHO decay being
the mean HCHO from rapid conversion (8 % of ISOPOOH)
over the hour prior to leaving the boundary layer. The bot-
tom panel of Fig. 6 shows the percentage of observed HCHO
that would be from ISOPOOH conversion under the mod-
eled assumptions. The HCHO from ISOPOOH conversion
accounts for less than 10 % of the measured HCHO and is
largely controlled by low ambient HCHO rather than large
amounts of HCHO from ISOPOOH conversion. The de-
layed HCHO source from ISOPOOH is likely a function of
exposure time in addition to ISOPOOH mixing ratio. The
HCHO decay from Experiment E8 followed exposure to 6–
19 ppbv of ISOPOOH over
3 h, resulting in an integrated
ISOPOOH exposure that greatly exceeds in situ sampling
UTC
Mix
ing ratio (pptv)
0
200
400
UTC
% of HCHO
from conversion
0
5
10
Al
itude (km)
0
10
20
ISAF HCHO
CIT ISOPOOH
S
hort-term contamination
L
ong-term contamination
20:30
21:00
21:30
22:00
20:30
21:00
21:30
22:00
Figure 6.
Hypothesized HCHO signal from delayed ISOPOOH
conversion, shown for part of SEAC
4
RS flight on 6 Septem-
ber 2013. Top panel: time series of ISAF HCHO (black line),
CIT ISOPOOH (blue line), potential HCHO signal from prompt
ISOPOOH conversion (red line), and potential HCHO signal from
delayed ISOPOOH conversion (cyan line). Bottom panel: altitude
(black line) and percentage of HCHO that might be from delayed
ISOPOOH conversion (red line).
conditions. As a result, the estimated error shown in Fig. 6,
bottom panel, may be an upper limit.
4 Summary and conclusions
In the ambient atmosphere, (1,2)-ISOPOOH will be the
predominant isomer due to first-generation isoprene RO
2
branching and isomerization (Bates et al., 2014; Teng et al.,
2016), and more rapid reaction of (4,3)-ISOPOOH with OH
(St. Clair et al., 2016). Consequently, the laboratory experi-
ments with (1,2)-ISOPOOH are most relevant to the potential
HCHO artifact in ISAF. Under dry conditions, only
3 %
of the (1,2)-ISOPOOH was converted to HCHO. Under hu-
mid conditions closer to typical high ISOPOOH sampling
conditions, the conversion is still only
6 % of ISOPOOH,
albeit with higher uncertainty. For comparison, the stated
ISAF measurement uncertainty is
±
10 % for calibration and
±
20 pptv for offset. Prompt conversion of ISOPOOH to
HCHO in the ISAF instrument will cause a negligible error
in the measurement of ambient HCHO.
The instrument surfaces that converted ISOPOOH to
HCHO in ISAF were thoroughly coated with ISOPOOH by
long exposure to high ISOPOOH concentrations, and back-
ground HCHO was subsequently elevated for a time period
orders of magnitude longer than suggested by the instrument
time constant (0.19 s). The slow time response may be an ar-
tifact unique to the laboratory experiments, or it may be an
indication of a delayed conversion of ISOPOOH to HCHO
that could cause an error in the measured HCHO after ex-
posure to ISOPOOH. The delayed conversion would mani-
fest for upper tropospheric measurements that follow closely
Atmos. Meas. Tech., 9, 4561–4568, 2016
www.atmos-meas-tech.net/9/4561/2016/
J. M. St. Clair et al.: Potential HCHO measurement artifact from ISOPOOH
4567
after extended boundary layer sampling in an isoprene-rich
area. For the SEAC
4
RS campaign example given, the error
was still within the stated ISAF measurement uncertainty.
Heating of the treated ISAF inlet tubing over the possible
operation range had no effect on the conversion rate, while
heating untreated stainless steel tubing converted a substan-
tial fraction (
50 % at 160
C) of ISOPOOH to HCHO with
high (> 80 %) molar conversion of ISOPOOH to HCHO,
as determined by dividing the change in ISOPOOH by the
change in HCHO. The high conversion rate on the un-
treated stainless steel tubing suggests attributes that should
be avoided in instrument and inlet design to minimize con-
version of hydroperoxide compounds. These experiments
suggest that instruments with any amount of metal surface
uncoated with a fluoropolymer, particularly if the surface is
heated, are likely susceptible to conversion of organic per-
oxides such as ISOPOOH. The most likely site for conver-
sion in ISAF is the MKS pressure controller upstream of the
detection cell. As a step toward eliminating the small con-
version in ISAF, this component will be replaced with a ver-
sion that has smaller unflushed volumes and fluoropolymer-
coated surfaces.
Future work will extend the testing of instrumentation to-
wards interferences from additional reactive peroxides that
can be abundant in the boundary layer, e.g., hydroxymethyl
hydrogen peroxide.
5 Data availability
SEAC
4
RS campaign data (Hanisco, 2014; Wennberg, 2014)
used in this paper can be obtained from http://www-air.larc.
nasa.gov/cgi-bin/ArcView/seac4rs.
The Supplement related to this article is available online
at doi:10.5194/amt-9-4561-2016-supplement.
Acknowledgements.
F.
N.
Keutsch
and
J.
C.
Rivera-
Rios were supported by the National Science Foundation
(AGS 1628491, 1628530, 1247421, 1321987). J. M. St. Clair,
G. M. Wolfe, and T. F. Hanisco were supported by NASA
(NNH12ZDA001N-UACO). M. J. Kim was supported by the
National Science Foundation (AGS PRF 1524860).
Edited by: A. Hofzumahaus
Reviewed by: two anonymous referees
References
Bates, K. H., Crounse, J. D., St. Clair, J. M., Bennett, N. B., Nguyen,
T. B., Seinfeld, J. H., Stoltz, B. M., and Wennberg, P. O.: Gas
phase production and loss of isoprene epoxydiols, J. Phys. Chem.
A, 118, 1237–1246, doi:10.1021/jp4107958, 2014.
Cazorla, M., Wolfe, G. M., Bailey, S. A., Swanson, A. K., Arkinson,
H. L., and Hanisco, T. F.: A new airborne laser-induced fluores-
cence instrument for in situ detection of formaldehyde through-
out the troposphere and lower stratosphere, Atmos. Meas. Tech.,
8, 541–552, doi:10.5194/amt-8-541-2015, 2015.
Chance, K., Palmer, P. I., Spurr, R. J. D., Martin, R. V., Kurosu, T.
P., and Jacob, D. J.: Satellite observations of formaldehyde over
North America from GOME, Geophys. Res. Lett., 27, 3461–
3464, doi:10.1029/2000GL011857, 2000.
Crounse, J. D., McKinney, K. A., Kwan, A. J., and Wennberg,
P. O.: Measurement of gas-phase hydroperoxides by chemi-
cal ionization mass spectrometry, Anal. Chem., 78, 6726–6732,
doi:10.1021/ac0604235, 2006.
DiGangi, J. P., Boyle, E. S., Karl, T., Harley, P., Turnipseed, A.,
Kim, S., Cantrell, C., Maudlin III, R. L., Zheng, W., Flocke, F.,
Hall, S. R., Ullmann, K., Nakashima, Y., Paul, J. B., Wolfe, G.
M., Desai, A. R., Kajii, Y., Guenther, A., and Keutsch, F. N.:
First direct measurements of formaldehyde flux via eddy covari-
ance: implications for missing in-canopy formaldehyde sources,
Atmos. Chem. Phys., 11, 10565–10578, doi:10.5194/acp-11-
10565-2011, 2011.
Fortems-Cheiney, A., Chevallier, F., Pison, I., Bousquet, P., Saunois,
M., Szopa, S., Cressot, C., Kurosu, T. P., Chance, K., and Fried,
A.: The formaldehyde budget as seen by a global-scale multi-
constraint and multi-species inversion system, Atmos. Chem.
Phys., 12, 6699–6721, doi:10.5194/acp-12-6699-2012, 2012.
Hanisco, T. F.: SEAC4RS 6 September 2013 HCHO data, file name:
seac4rs-ISAF-H2CO_DC8_20130906_R1.ict, available at: http:
//www-air.larc.nasa.gov/cgi-bin/ArcView/seac4rs, 2014
Hottle, J. R., Huisman, A. J., DiGangi, J. P., Kammrath,
A., Galloway, M. M., Coens, K. L., and Keutsch, F. N.:
Fluorescence-based instrument for in-situ measurements of at-
mospheric formaldehyde, Environ. Sci. Technol., 43, 790–795,
doi:10.1021/es801621f, 2009.
Kaiser, J., Wolfe, G. M., Min, K. E., Brown, S. S., Miller, C. C., Ja-
cob, D. J., deGouw, J. A., Graus, M., Hanisco, T. F., Holloway, J.,
Peischl, J., Pollack, I. B., Ryerson, T. B., Warneke, C., Washen-
felder, R. A., and Keutsch, F. N.: Reassessing the ratio of glyoxal
to formaldehyde as an indicator of hydrocarbon precursor speci-
ation, Atmos. Chem. Phys., 15, 7571–7583, doi:10.5194/acp-15-
7571-2015, 2015.
Karl, T., Guenther, A., Yokelson, R. J., Greenberg, J., Poto-
snak, M., Blake, D. R., and Artaxo, P.: The tropical forest
and fire emissions experiment: Emission, chemistry, and trans-
port of biogenic volatile organic compounds in the lower at-
mosphere over Amazonia, J. Geophys. Res., 112, D18302,
doi:10.1029/2007JD008539, 2007.
Liu, Y. J., Herdlinger-Blatt, I., McKinney, K. A., and Martin, S. T.:
Production of methyl vinyl ketone and methacrolein via the hy-
droperoxyl pathway of isoprene oxidation, Atmos. Chem. Phys.,
13, 5715–5730, doi:10.5194/acp-13-5715-2013, 2013.
Marais, E. A., Jacob, D. J., Kurosu, T. P., Chance, K., Murphy, J.
G., Reeves, C., Mills, G., Casadio, S., Millet, D. B., Barkley,
M. P., Paulot, F., and Mao, J.: Isoprene emissions in Africa in-
ferred from OMI observations of formaldehyde columns, At-
mos. Chem. Phys., 12, 6219–6235, doi:10.5194/acp-12-6219-
2012, 2012.
Millet, D. B., Jacob, D. J., Boersma, K. F., Fu, T. M., Kurosu,
T. P., Chance, K., Heald, C. L., and Guenther, A.: Spa-
www.atmos-meas-tech.net/9/4561/2016/
Atmos. Meas. Tech., 9, 4561–4568, 2016
4568
J. M. St. Clair et al.: Potential HCHO measurement artifact from ISOPOOH
tial distribution of isoprene emissions from North Amer-
ica derived from formaldehyde column measurements by the
OMI satellite sensor, J. Geophys. Res.-Atmos., 113, 1–18,
doi:10.1029/2007JD008950, 2008.
Nguyen, T. B., Crounse, J. D., Teng, A. P., St. Clair, J. M., Paulot, F.,
Wolfe, G. M., and Wennberg, P. O.: Rapid deposition of oxidized
biogenic compounds to a temperate forest, P. Natl. Acad. Sci.
USA, 112, E392–E401, doi:10.1073/pnas.1418702112, 2015.
Palmer, P. I., Jacob, D. J., Fiore, A. M., Martin, R. V, Chance,
K., and Kurosu, T. P.: Mapping isoprene emissions over North
America using formaldehyde column observations from space, J.
Geophys. Res.-Atmos., 108, 4180, doi:10.1029/2002JD002153,
2003.
Palmer, P. I., Abbot, D. S., Fu, T., Jacob, D. J., Chance, K.,
Kurosu, T. P., Guenther, A., Wiedinmyer, C., Stanton, J. C.,
Pilling, M. J., Pressley, S. N., Lamb, B., and Sumner, A. L.:
Quantifying the seasonal and interannual variability of North
American isoprene emissions using satellite observations of
the formaldehyde column, J. Geophys. Res., 111, D12315,
doi:10.1029/2005JD006689, 2006.
Paulot, F., Crounse, J. D., Kjaergaard, H. G., Kürten, A., St. Clair,
J. M., Seinfeld, J. H., and Wennberg, P. O.: Unexpected epoxide
formation in the gas-phase photooxidation of isoprene., Science,
325, 730–733, doi:10.1126/science.1172910, 2009.
Rivera-Rios, J. C., Nguyen, T. B., Crounse, J. D., Jud, W., St. Clair,
J. M., Mikoviny, T., Gilman, J. B., Lerner, B. M., Kaiser, J. B.,
de Gouw, J., Wisthaler, A., Hansel, A., Wennberg, P. O., Sein-
feld, J. H., and Keutsch, F. N.: Conversion of hydroperoxides
to carbonyls in field and laboratory instrumentation: Observa-
tional bias in diagnosing pristine versus anthropogenically con-
trolled atmospheric chemistry, Geophys. Res. Lett., 41, 8645–
8651, doi:10.1002/2014GL061919, 2014.
St. Clair, J. M., McCabe, D. C., Crounse, J. D., Steiner, U., and
Wennberg, P. O.: Chemical ionization tandem mass spectrometer
for the in situ measurement of methyl hydrogen peroxide, Rev.
Sci. Instrum., 81, 094102, doi:10.1063/1.3480552, 2010.
St. Clair, J. M., Rivera-Rios, J. C., Crounse, J. D., Knap, H. C.,
Bates, K. H., Teng, A. P., Jørgensen, S., Kjaergaard, H. G.,
Keutsch, F. N., and Wennberg, P. O.: Kinetics and Products of the
Reaction of the First-Generation Isoprene Hydroxy Hydroperox-
ide (ISOPOOH) with OH, J. Phys. Chem. A, 120, 1441–1451,
doi:10.1021/acs.jpca.5b06532, 2016.
Teng, A. P., Crounse, J. D., and Wennberg, P. O.: Isoprene peroxy
radical dynamics, in preparation, 2016.
Toon, O. B., Maring, H., Dibb, J., Ferrare, R., Jacob, D. J.,
Jensen, E. J., Luo, Z. J., Mace, G. G., Pan, L. L., Pfister,
L., Rosenlof, K. H., Redemann, J., Reid, J. S., Singh, H. B.,
Thompson, A. M., Yokelson, R., Minnis, P., Chen, G., Jucks,
K. W. and Pszenny, A.: Planning, implementation, and scien-
tific goals of the Studies of Emissions and Atmospheric Com-
position, Clouds and Climate Coupling by Regional Surveys
(SEAC4RS) field mission, J. Geophys. Res.-Atmos., 121, 4967–
5009, doi:10.1002/2015JD024297, 2016.
Wennberg, P. O.: SEAC4RS 6 September 2013 ISOPOOH data, file
name: seac4rs-CIT-ISOPOOH_DC8_20130906_R1.ict, avail-
able at: http://www-air.larc.nasa.gov/cgi-bin/ArcView/seac4rs,
2014.
Wolfe, G. M., Kaiser, J., Hanisco, T. F., Keutsch, F. N., de Gouw,
J. A., Gilman, J. B., Graus, M., Hatch, C. D., Holloway, J.,
Horowitz, L. W., Lee, B. H., Lerner, B. M., Lopez-Hilifiker, F.,
Mao, J., Marvin, M. R., Peischl, J., Pollack, I. B., Roberts, J. M.,
Ryerson, T. B., Thornton, J. A., Veres, P. R., and Warneke, C.:
Formaldehyde production from isoprene oxidation across NO
x
regimes, Atmos. Chem. Phys., 16, 2597–2610, doi:10.5194/acp-
16-2597-2016, 2016.
Atmos. Meas. Tech., 9, 4561–4568, 2016
www.atmos-meas-tech.net/9/4561/2016/