Investigation of a potential HCHO measurement artifact from
ISOPOOH
Jason M. St. Clair
1,2
,
Jean C. Rivera-Rios
6
,
John D. Crounse
4
,
Eric Praske
5
,
Michelle J.
Kim
4
,
Glenn M. Wolfe
1,2
,
Frank N. Keutsch
3,6
,
Paul O. Wennberg
4,7
, and
Thomas F. Hanisco
1
1
Atmospheric Chemistry and Dynamics Laboratory, NASA Goddard Space Flight Center,
Greenbelt, MD, 20771, USA
2
Joint Center for Earth Systems Technology, University of Maryland Baltimore County, Baltimore,
MD, 21228, USA
3
Department of Chemistry, University of Wisconsin-Madison, Madison, WI, 53706, USA
4
Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA,
91125, USA
5
Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena,
CA, 91125, USA
6
Paulson School of Engineering and Applied Sciences and Department of Chemistry and
Chemical Biology, Harvard University, Cambridge MA, 02138, USA
7
Division of Engineering and Applied Science, California Institute of Technology, Pasadena, CA,
91125, USA
Abstract
Recent laboratory experiments have shown that a first generation isoprene oxidation product,
ISOPOOH, can decompose to methyl vinyl ketone (MVK) and methacrolein (MACR) on
instrument surfaces, leading to overestimates of MVK and MACR concentrations. Formaldehyde
(HCHO) was suggested as a decomposition co-product, raising concern that in situ HCHO
measurements may also be affected by an ISOPOOH interference. The HCHO measurement
artifact from ISOPOOH for the NASA In Situ Airborne Formaldehyde instrument (ISAF) was
investigated for the two major ISOPOOH isomers, (1,2)-ISOPOOH and (4,3)-ISOPOOH, under
dry and humid conditions. The dry conversion of ISOPOOH to HCHO was 3±2% and 6±4% for
(1,2)-ISOPOOH and (4,3)-ISOPOOH, respectively. Under humid (RH= 40-60%) conditions,
conversion to HCHO was 6±4% for (1,2)-ISOPOOH and 10±5% for (4,3)-ISOPOOH. The
measurement artifact caused by conversion of ISOPOOH to HCHO in the ISAF instrument was
estimated for data obtained on the 2013 September 6 flight of the Studies of Emissions and
Atmospheric Composition, Clouds and Climate Coupling by Regional Surveys (SEAC
4
RS)
Correspondence to
: Jason M. St. Clair (jason.m.stclair@nasa.gov).
Supplementary material related to this article is available.
Data availability
SEAC
4
RS campaign data used in this paper can be obtained via the following DOI: 10.5067/Aircraft/SEAC4RS/Aerosol-TraceGas-
Cloud
NASA Public Access
Author manuscript
Atmos Meas Tech
. Author manuscript; available in PMC 2018 April 08.
Published in final edited form as:
Atmos Meas Tech
. 2016 ; 9(9): 4561–4568. doi:10.5194/amt-9-4561-2016.
NASA Author Manuscript
NASA Author Manuscript
NASA Author Manuscript
campaign. Prompt ISOPOOH conversion to HCHO was the source for <4% of the observed
HCHO, including in the high-isoprene boundary layer. Time-delayed conversion, where previous
exposure to ISOPOOH affects measured HCHO later in flight, was conservatively estimated to be
< 10% of observed HCHO and is significant only when high ISOPOOH sampling periods
immediately precede periods of low HCHO.
1 Introduction
Formaldehyde (HCHO) in the atmosphere is predominantly a product of the gas phase
oxidation of volatile organic compounds (VOCs). Oxidation of methane produces a global
background of HCHO that accounts for ~80% of the global HCHO production (
Fortems-
Cheiney et al., 2012
). The emissions of non-methane hydrocarbons (NMHCs), such as
isoprene and its oxidation products, are more localized and create spatial heterogeneity in
HCHO production due to their shorter atmospheric lifetime. HCHO is one of the few VOCs
that can be measured from orbit (e.g.,
Chance et al., 2000
) and is used to estimate global
isoprene emissions from space (
Marais et al., 2012
;
Millet et al., 2008
;
Palmer et al., 2003
,
2006
). Thus, accurate in situ HCHO measurements in isoprene-rich environments are crucial
for refining our understanding of biogenic emissions and chemistry (
Kaiser et al., 2015
;
Wolfe et al., 2016
).
Measurements of the major first generation NO-dominated isoprene oxidation products,
methyl vinyl ketone (MVK) and methacrolein (MACR), are frequently used in combination
with isoprene measurements to understand biogenic oxidative environments (e.g.,
Karl et al.,
2007
). The instrumental techniques used to measure MVK and MACR, e.g. proton transfer
reaction-mass spectrometry (PTR-MS) and gas chromatography (GC), have recently been
shown to convert the major first generation HO
2
-dominated isoprene oxidation product,
isoprene hydroxyhydroperoxides (ISOPOOH), into MVK or MACR with varying yields
(
Liu et al., 2013
;
Rivera-Rios et al., 2014
). Conversion of ISOPOOH to MVK/MACR likely
occurs via cleavage of the peroxy bond and is catalyzed by metal surfaces in instrument gas
sampling systems (
Rivera-Rios et al., 2014
). The alkoxy radicals generated from breaking
the peroxy bond subsequently decompose, in the presence of O
2
, to MVK (from (1,2)-
ISOPOOH) or MACR (from (4,3)-ISOPOOH), HCHO, and HO
2
. Figure 1 shows the two
major isomers of ISOPOOH and the observed hydrocarbon products of their instrument
surface-mediated decomposition.
The equivalent amount of HCHO produced with MVK/MACR has led to some concern in
the community that ISOPOOH causes a measurement artifact in HCHO instruments. The
degree of conversion will be highly dependent on instrument configuration, including the
nature of exposed surfaces, gas temperatures, and flow rates. This study was conducted to
investigate the potential HCHO measurement interference from ISOPOOH for the NASA
ISAF (In Situ Airborne Formaldehyde) HCHO instrument (
Cazorla et al., 2015
). The design
of the ISAF instrument minimizes sample volume to maximize the instrument time
response, and the small volume also minimizes surface area available for ISOPOOH
conversion to HCHO. In addition, most exposed surfaces in the sample inlet and instrument
are either fluoropolymer (PFA tubing) or coated in fluoropolymer (FluoroPel, Cytonix).
St. Clair et al.
Page 2
Atmos Meas Tech
. Author manuscript; available in PMC 2018 April 08.
NASA Author Manuscript
NASA Author Manuscript
NASA Author Manuscript
Results for the Harvard formaldehyde instrument (
DiGangi et al., 2011
;
Hottle et al., 2009
)
will be published separately as part of a larger study (FIXCIT/SOAS).
Experiments were conducted for both major ISOPOOH isomers, (1,2)-ISOPOOH and (4,3)-
ISOPOOH, under both dry and humid conditions. The influence of inlet temperature and the
composition of exposed surfaces were also investigated. A slow HCHO time constant,
unique to the ISOPOOH conversion experiments and caused by the experimental conditions,
is discussed. Finally, the experimental results for ISOPOOH conversion to HCHO and the
laboratory time constant are discussed in the context of data from the Studies of Emissions
and Atmospheric Composition, Clouds and Climate Coupling by Regional Surveys
(SEAC
4
RS) campaign (
Toon et al., 2016
).
2 Experimental
In total, 10 experiments were conducted and are listed in Table 1. Experiments were
performed for both major ISOPOOH isomers, (1,2)-ISOPOOH (ISOPBOOH) and (4,3)-
ISOPOOH (ISOPDOOH), which were synthesized for these experiments (
Rivera-Rios et al.,
2014
). Sample purity, as determined by NMR, was 78% for 1,2 ISOPOOH and 89% for 4,3
ISOPOOH with water, H
2
O
2
, and diethyl ether as the main impurities. For each isomer, two
dry air ISOPOOH to HCHO conversion experiments and one humid air conversion
experiment were performed. The effect of temperature and tubing material was investigated
for each isomer with two experiments for each, one with varied ISAF inlet tubing
temperatures and one with varied bare stainless steel tubing temperatures.
All experiments were conducted using a ~1 m
3
FEP chamber. ISOPOOH was introduced
into the chamber by flowing 20 standard liters per minute (sLm) of dry air over droplets of
ISOPOOH for 10-30 minutes, and the remaining chamber volume was filled with dry air.
The sampling set-up is shown in Fig. 2. A sample line (6.35 mm OD PFA) connects the
chamber to the instruments, with the sample flow determined by the sum of the individual
instrument sample flows (~10 sLm typical). Two Caltech Chemical Ionization Mass
Spectrometers (CIT-CIMS) instruments provided measurements of ISOPOOH (
Crounse et
al., 2006
;
Paulot et al., 2009
;
St. Clair et al., 2010
;
Nguyen et al., 2015
) and the ISAF
instrument (
Cazorla et al., 2015
) measured HCHO.
The ISAF flight inlet (
Cazorla et al., 2015
) was represented in the lab experiments by a 30.5
cm length of 6.35 mm OD silica-steel tubing (Fig. 2, item B) coated with a fluoropolymer
(FluoroPel, Cytonix) and attached to a thermally controlled piece of aluminum using thermal
epoxy. The equivalent tubing in the NASA DC-8 ISAF inlet is heated by two zones of
heaters, each controlled by a thermostat: the first zone is controlled to 43-54° C (Honeywell
3100U-31440) and the second zone is controlled to 27-38° C (Honeywell 3100U-31437).
The thermostats are mounted on two aluminum blocks that enclose and heat the inlet tubing;
the inlet tubing and the sample flow are likely cooler than the control temperature. For the
lab tests, a Minco heater controller (model CT325) provided variable and stable control
temperatures, and a thermistor on the aluminum piece provided the temperature. In flight,
flow rates through the DC-8 inlet are 10-25 sLm, with ~2.5 sLm of the total inlet flow
subsampled by the instrument. During these experiments, the large inlet flow was not
St. Clair et al.
Page 3
Atmos Meas Tech
. Author manuscript; available in PMC 2018 April 08.
NASA Author Manuscript
NASA Author Manuscript
NASA Author Manuscript
possible due to limited chamber volume. All of the inlet flow passed through the instrument
and ranged from 3-7 sLm.
All experiments started with dry air flowing through the sample line to measure the
background level of ISOPOOH and HCHO. Typical background mixing ratios were 120 and
150 pptv, respectively, and were influenced by recent experiments and sample tubing
flushing time. For humid experiments, the dry background was followed by a humid
background where the air was humidified by passing the dry air through a water bubbler.
Because of dissolved trace HCHO in the liquid water and possible wall exchange effects, the
background HCHO was typically higher under humid conditions than dry conditions by
~40-100 pptv. Any background HCHO that originated from a source other than the dry or
humid air (e.g. from the ISOPOOH sample) was not accounted for and would bias the
conversion rate high. After obtaining a background measurement, the instruments sampled
the chamber air diluted by dry (or humid) air provided by a mass flow controller as shown in
Fig. 2. By varying the amount of air provided by the flow controller, the instruments
sampled multiple [ISOPOOH] from the same chamber fill.
The effect of ISAF inlet temperature on ISOPOOH conversion to HCHO was investigated
by setting the inlet tube to multiple temperatures with a constant [ISOPOOH] and observing
the change in measured HCHO. To demonstrate the potential for heated, untreated stainless
steel to convert ISOPOOH to HCHO, another set of experiments was conducted where the
sampling line from the chamber included a 15.4 cm section of 6.35 mm OD stainless steel
tubing held inside a GC oven. The untreated tubing was inline between the chamber and the
instruments (Fig. 2, item A).
3 Results and Discussion
3.1 Treatment of pre-instrument ISOPOOH to HCHO conversion
The HCHO data at the beginning of each conversion experiment contains a rapid increase
followed by a multi-exponential decay. The ISOPOOH data exhibits a complementary time
response such that if the HCHO decay is added to the ISOPOOH data, the result is a sharp
transition from the background measurement to the final ISOPOOH mixing ratio. We infer
that this represents a possible ISOPOOH to HCHO conversion upstream of the instruments
and a correction should be applied to improve the calculation of the conversion rate within
the ISAF instrument.
The HCHO data for the first ISOPOOH mixing ratio of each experiment were fit with a
three term multi-exponential function to determine the appropriate time constants. The
function (Eq. (1)) is:
Function = A
1
× exp( − t/τ
1
) + A
2
× exp( − t/τ
2
) + A
3
× exp( − t/τ
3
) + c
(1)
All fits were constrained to require positive values for all fit parameters, and the data for
post-experiment zero data could not be negative after subtraction of the decay fit. These
constraints were imposed to prevent the fit from using one term from offsetting a non-
St. Clair et al.
Page 4
Atmos Meas Tech
. Author manuscript; available in PMC 2018 April 08.
NASA Author Manuscript
NASA Author Manuscript
NASA Author Manuscript
physical value for another. The data were then fit using the selected three time constants
(100 s, 800 s, 2000 s) to obtain the best pre-exponential terms to describe all of the
experiments. The final fit was conducted with the ratio of the first three pre-exponential
terms fixed relative to each other: A
1
= A
2
and A
3
=0.25×A
1
. Two variables were optimized:
A
1
, and c. The goal of the preceding steps was to obtain a three term exponential function
that would reasonably describe the data from multiple experiments by fitting a single scaling
factor (representing [ISOPOOH] at t=0) and a constant (representing a background). The
ISOPOOH and HCHO used hereafter have the decay fit added and subtracted, respectively,
from the original data. Figure S1 shows the effect of the correction on experiment E7 data as
an example. Two experiments were not corrected for pre-instrument conversion: E5 and
E10. Experiment E5 did not require this correction because it was a continuation of another
experiment (E4) and so did not exhibit the same decay. E10 was excluded because HCHO
data for the first set point was close to stable before the ISOPOOH concentration was
changed, and the correction applied to the other experiments would be larger than the E10
data warrant.
3.2 Conversion under dry conditions
Two experiments for each of the ISOPOOH isomers (E1 and E10 for (1,2)-ISOPOOH; E5
and E9 for (4,3)-ISOPOOH) were conducted under dry conditions, and the results are listed
in Table 2. Figure 3 shows the HCHO time series for one (1,2)-ISOPOOH experiment, as
well as the linear regression of HCHO and ISOPOOH for the two experiments. The
background signal for both species was subtracted from the data in all regression plots. The
regressions give ~3% conversion of (1,2)-ISOPOOH to HCHO under dry conditions for both
experiments fit separately and as one data set. The equivalent plots for (4,3)-ISOPOOH are
shown in Fig. S2. For (4,3)-ISOPOOH, the fits for the two experiments differ significantly,
with one experiment giving ~4% conversion and the second giving ~7% conversion. The
second conversion experiments followed a humid experiment, and the prolonged exposure of
surfaces to water vapor may have affected the subsequent conversion efficiency despite the
sample line being purged with dry air for ~30 minutes in between experiments. The
conversion of (4,3)-ISOPOOH to HCHO under dry conditions is estimated to be ~6%.
3.3 Conversion under humid conditions
One experiment for each ISOPOOH isomer was conducted under humid conditions to
evaluate the influence of water vapor on ISOPOOH conversion to HCHO. The results are
displayed in Table 2, and the data from the (1,2)-ISOPOOH (E7) and (4,3)-ISOPOOH (E8)
experiments are shown in Figs. S3 and S4, respectively. Relative humidity was ~60% for E7
and ~40% for E8, and was determined using the ToF-CIMS CF
3
O
−
two water cluster signal
(m/z=121). The conversion rate under humid conditions is higher than under dry conditions,
and the HCHO-ISOPOOH relationship is not linear over the range of [ISOPOOH]. One
possible cause of the nonlinearity is that the conversion process becomes saturated with
respect to ISOPOOH at higher [ISOPOOH]. If saturation is occurring, the conversion rate
relevant to field operation will be the higher rate obtained from the lower [ISOPOOH] data.
Because of the uncertainty related to the higher background, surface equilibration, and
nonlinearity, the estimated uncertainty for the ISOPOOH conversion fraction is higher for
the humid experiments than the dry experiments. Using the lower [ISOPOOH] data where
St. Clair et al.
Page 5
Atmos Meas Tech
. Author manuscript; available in PMC 2018 April 08.
NASA Author Manuscript
NASA Author Manuscript
NASA Author Manuscript
the relationship is linear, the (1,2)-ISOPOOH conversion to HCHO is determined to be 6%
and for (4,3)-ISOPOOH it is 10%.
3.4 Temperature dependence of conversion
The effect of tubing temperature on ISOPOOH conversion to HCHO was evaluated for an
ISAF inlet tubing proxy and for untreated stainless steel tubing. The data for both sets of
experiments are displayed in Fig. 4. The inlet tubing was heated to multiple temperature set
points, including near the upper limit of the thermostats that control the inlet heaters during
flight (54° C). The data indicated no discernable temperature dependence of ISOPOOH to
HCHO conversion for either ISOPOOH isomer. A section of untreated stainless steel tubing
was heated to much higher temperatures to demonstrate the potential for ISOPOOH
conversion on heated, untreated metal surfaces. The conversion fraction for a given
temperature was also found to be a function of the gas-tubing contact time, determined by
the length of exposed tubing and the sample flow rate, and should not be taken as
quantitatively applicable to other configurations. Room temperature conversion rates for
(4,3)-ISOPOOH were not significantly higher with the untreated stainless tubing in place
than the experiments (Table 2) without it. At elevated temperatures, however, the conversion
fraction steadily increased, reaching ~50% conversion for (1,2)-ISOPOOH at 160° C.
3.5 Instrument time constant
The inherent HCHO time response of the ISAF instrument is rapid, measured as 0.19 s in
the lab (
Cazorla et al., 2015
). The equilibration time indicated in the conversion experiments
is considerably longer, though the time constants in the correction term described in Sect. 3
removed some of the equilibration time. During the conversion experiments, the ISAF
instrument was exposed to ISOPOOH mixing ratios that are ~10 times higher than those
present in the real atmosphere. Due to small conversion efficiencies, such high levels of
ISOPOOH were necessary for discriminating signal changes over the chamber background.
The high ISOPOOH levels, however, thoroughly coated the surface sites in the instrument
that convert ISOPOOH to HCHO to a degree that is not relevant to the atmosphere, and
resulted in a longer term HCHO source from ISOPOOH conversion that is unlikely to
represent the instrument response in the real atmosphere. The potential interference from
this time constant is nonetheless investigated in the following section.
3.6 Insight from SEAC
4
RS for conversion and time constant importance
The Studies of Emissions and Atmospheric Composition, Clouds and Climate Coupling by
Regional Surveys (SEAC
4
RS) campaign included flight tracks over the Ozark Mountains to
sample an isoprene rich, low-NO
x
region. Figure 5 shows data from the SEAC
4
RS flight (6
September 2013) with some of the highest ISOPOOH mixing ratios of the campaign. In the
top panel, ISAF HCHO and CIT ISOPOOH data are plotted as a time series along with the
possible HCHO from ISOPOOH conversion, assuming a conservative 8% prompt
conversion rate. The percentage of the ISAF HCHO measurement that is potentially from
prompt ISOPOOH conversion is shown in the bottom panel and does not exceed 4% of the
measured HCHO. For comparison, the stated calibration accuracy of ISAF is ±10%. The
conversion percent was set to zero for ISOPOOH values of ≤ 80 pptv to improve figure
clarity.
St. Clair et al.
Page 6
Atmos Meas Tech
. Author manuscript; available in PMC 2018 April 08.
NASA Author Manuscript
NASA Author Manuscript
NASA Author Manuscript
While prompt conversion of ISOPOOH to HCHO was shown to have a negligible impact on
the HCHO measurement, a transition from a high ISOPOOH, high HCHO, sampling
environment to a low HCHO environment may result in a greater fractional influence of
ISOPOOH conversion on measured HCHO, if a significant amount of ISOPOOH conversion
continues after leaving the boundary layer. To illustrate the potential effects of delayed
ISOPOOH conversion to HCHO on field data, a section of the SEAC
4
RS 2013 September 6
flight was selected where the aircraft rapidly ascended from an isoprene-rich boundary layer
up to over 12 km (Fig. 6, bottom panel). The HCHO transitioned from ~4 ppbv to as low as
~100 pptv and ISOPOOH decreased from peaks of ~1.3 ppbv to ~0 pptv (Figs 5 and 6, top
panels).
The instrument response to a rapid decrease in ISOPOOH and HCHO mixing ratios was
modeled using the end of Experiment E8, where the sample line source was transferred from
the chamber to clean humid air and subsequently to dry air. The decay of the HCHO signal
was first normalized to the initial mixing ratio so that at time=0, HCHO=1. The sample line
response was then removed from the fractional HCHO decay by subtracting the fractional
ISOPOOH decay, which was assumed to be representative of the sample line response. The
remaining fractional HCHO decay represents only the instrument response.
The modeled long-term HCHO source from ISOPOOH conversion is shown in Fig. 6, top
panel. The HCHO decay started at time = 20.582 h UTC, which was chosen to coincide with
the rapid drop in ambient HCHO mixing ratio. The fractional decay of the HCHO from
ISOPOOH conversion from Experiment E8 was applied to the in situ data, with the starting
value of the in situ HCHO decay being the mean HCHO from rapid conversion (8% of
ISOPOOH) over the hour prior to leaving the boundary layer. The bottom panel of Fig. 6
shows the percentage of observed HCHO that would be from ISOPOOH conversion under
the modeled assumptions. The HCHO from ISOPOOH conversion accounts for less than
10% of the measured HCHO and is largely controlled by low ambient HCHO rather than
large amounts of HCHO from ISOPOOH conversion. The delayed HCHO source from
ISOPOOH is likely a function of exposure time in addition to ISOPOOH mixing ratio. The
HCHO decay from Experiment E8 followed exposure to 6-19 ppbv of ISOPOOH over ~ 3
hours, resulting in an integrated ISOPOOH exposure that greatly exceeds in situ sampling
conditions. As a result, the estimated error shown in Fig. 6, bottom panel, may be an upper
limit.
4 Summary and Conclusions
In the ambient atmosphere, (1,2)-ISOPOOH will be the predominant isomer due to first
generation isoprene RO
2
branching and isomerization (
Bates et al., 2014
;
Teng et al., in
preparation
), and more rapid reaction of (4,3)-ISOPOOH with OH (
St. Clair et al., 2015
).
Consequently, the laboratory experiments with (1,2)-ISOPOOH are most relevant to the
potential HCHO artifact in ISAF. Under dry conditions, only ~3% of the (1,2)-ISOPOOH
was converted to HCHO. Under humid conditions closer to typical high ISOPOOH sampling
conditions, the conversion is still only ~6% of ISOPOOH, albeit with higher uncertainty. For
comparison, the stated ISAF measurement uncertainty is ±10% for calibration and ±20 pptv
St. Clair et al.
Page 7
Atmos Meas Tech
. Author manuscript; available in PMC 2018 April 08.
NASA Author Manuscript
NASA Author Manuscript
NASA Author Manuscript
for offset. Prompt conversion of ISOPOOH to HCHO in the ISAF instrument will cause a
negligible error in the measurement of ambient HCHO.
The instrument surfaces that converted ISOPOOH to HCHO in ISAF were thoroughly
coated with ISOPOOH by long exposure to high ISOPOOH concentrations, and background
HCHO was subsequently elevated for a time period orders of magnitude longer than
suggested by the instrument time constant (0.19 s). The slow time response may be an
artifact unique to the laboratory experiments, or it may be an indication of a delayed
conversion of ISOPOOH to HCHO that could cause an error in the measured HCHO after
exposure to ISOPOOH. The delayed conversion would manifest for upper tropospheric
measurements that follow closely after extended boundary layer sampling in an isoprene-
rich area. For the SEAC
4
RS campaign example given, the error was still within the stated
ISAF measurement uncertainty.
Heating of the treated ISAF inlet tubing over the possible operation range had no effect on
the conversion rate, while heating untreated stainless steel tubing converted a substantial
fraction (~50% at 160° C) of ISOPOOH to HCHO with high (>80%) molar conversion of
ISOPOOH to HCHO, as determined by dividing the change in ISOPOOH by the change in
HCHO. The high conversion rate on the untreated stainless steel tubing suggests attributes
that should be avoided in instrument and inlet design to minimize conversion of
hydroperoxide compounds. These experiments suggest that instruments with any amount of
metal surface uncoated with a fluoropolymer, particularly if the surface is heated, are likely
susceptible to conversion of organic peroxides such as ISOPOOH. The most likely site for
conversion in ISAF is the MKS pressure controller upstream of the detection cell. As a step
toward eliminating the small conversion in ISAF, this component will be replaced with a
version that has smaller unflushed volumes and fluoropolymer-coated surfaces.
Future work will extend the testing of instrumentation towards interferences from additional
reactive peroxides that can be abundant in the boundary layer, e.g. hydroxymethyl hydrogen
peroxide.
Supplementary Material
Refer to Web version on PubMed Central for supplementary material.
Acknowledgments
FNK and JCR were supported by the National Science Foundation (AGS 1628491, 1628530, 1247421, 1321987).
JMSC, GMW, and TFH were supported by NASA (NNH12ZDA001N-UACO). MJK was supported by the National
Science Foundation (AGS PRF 1524860).
References
Bates KH, Crounse JD, St Clair JM, Bennett NB, Nguyen TB, Seinfeld JH, Stoltz BM, Wennberg PO.
Gas phase production and loss of isoprene epoxydiols. J Phys Chem A. 2014; 118:1237–1246. DOI:
10.1021/jp4107958 [PubMed: 24476509]
Cazorla M, Wolfe GM, Bailey SA, Swanson AK, Arkinson HL, Hanisco TF. A new airborne laser-
induced fluorescence instrument for in situ detection of formaldehyde throughout the troposphere
and lower stratosphere. Atmos Meas Tech. 2015; 8:541–552. DOI: 10.5194/amt-8-541-2015
St. Clair et al.
Page 8
Atmos Meas Tech
. Author manuscript; available in PMC 2018 April 08.
NASA Author Manuscript
NASA Author Manuscript
NASA Author Manuscript
Chance K, Palmer PI, Spurr RJD, Martin RV, Kurosu TP, Jacob DJ. Satellite observations of
formaldehyde over North America from GOME. Geophys Res Lett. 2000; 27:3461–3464. DOI:
10.1029/2000GL011857
Crounse JD, McKinney KA, Kwan AJ, Wennberg PO. Measurement of gas-phase hydroperoxides by
chemical ionization mass spectrometry. Anal Chem. 2006; 78:6726–6732. DOI: 10.1021/ac0604235
[PubMed: 17007490]
DiGangi JP, Boyle ES, Karl T, Harley P, Turnipseed A, Kim S, Cantrell C, Maudlin RL III, Zheng W,
Flocke F, Hall SR, Ullmann K, Nakashima Y, Paul JB, Wolfe GM, Desai AR, Kajii Y, Guenther A,
Keutsch FN. First direct measurements of formaldehyde flux via eddy covariance: implications for
missing in-canopy formaldehyde sources. Atmos Chem Phys. 2011; 11:10565–10578. DOI:
10.5194/acp-11-10565-2011
Fortems-Cheiney A, Chevallier F, Pison I, Bousquet P, Saunois M, Szopa S, Cressot C, Kurosu TP,
Chance K, Fried A. The formaldehyde budget as seen by a global-scale multi-constraint and multi-
species inversion system. Atmos Chem Phys. 2012; 12:6699–6721. DOI: 10.5194/
acp-12-6699-2012
Hottle JR, Huisman AJ, Digangi JP, Kammrath A, Galloway MM, Coens KL, Keutsch FN.
Fluorescence-based instrument for in-situ measurements of atmospheric formaldehyde. Environ Sci
Technol. 2009; 43:790–795. [PubMed: 19245018]
Kaiser J, Wolfe GM, Min KE, Brown SS, Miller CC, Jacob DJ, de Gouw JA, Graus M, Hanisco TF,
Holloway J, Peischl J, Pollack IB, Ryerson TB, Warneke C, Washenfelder RA, Keutsch FN.
Reassessing the ratio of glyoxal to formaldehyde as an indicator of hydrocarbon precursor
speciation. Atmos Chem Phys. 2015; 15:7571–7583. DOI: 10.5194/acp-15-7571-2015
Karl T, Guenther A, Yokelson RJ, Greenberg J, Potosnak M, Blake DR, Artaxo P. The tropical forest
and fire emissions experiment: Emission, chemistry, and transport of biogenic volatile organic
compounds in the lower atmosphere over Amazonia. J Geophys Res. 2007; 112(D18):D18302.
Liu YJ, Herdlinger-Blatt I, McKinney KA, Martin ST. Production of methyl vinyl ketone and
methacrolein via the hydroperoxyl pathway of isoprene oxidation. Atmos Chem Phys. 2013;
13:5715–5730. DOI: 10.5194/acp-13-5715-2013
Marais EA, Jacob DJ, Kurosu TP, Chance K, Murphy JG, Reeves C, Mills G, Casadio S, Millet DB,
Barkley MP, Paulot F, Mao J. Isoprene emissions in Africa inferred from OMI observations of
formaldehyde columns. Atmos Chem Phys. 2012; 12:6219–6235. DOI: 10.5194/
acp-12-6219-2012
Millet DB, Jacob DJ, Boersma KF, Fu TM, Kurosu TP, Chance K, Heald CL, Guenther A. Spatial
distribution of isoprene emissions from North America derived from formaldehyde column
measurements by the OMI satellite sensor. J Geophys Res Atmos. 2008; 113:1–18. DOI:
10.1029/2007JD008950
Nguyen TB, Crounse JD, Teng AP, St Clair JM, Paulot F, Wolfe GM, Wennberg PO. Rapid deposition
of oxidized biogenic compounds to a temperate forest. Proc Natl Acad Sci. 2015; 112:E392–E401.
DOI: 10.1073/pnas.1418702112 [PubMed: 25605913]
Palmer PI, Jacob DJ, Fiore AM, Martin RV, Chance K, Kurosu TP. Mapping isoprene emissions over
North America using formaldehyde column observations from space. J Geophys Res Atmos. 2003;
108
Palmer PI, Abbot DS, Fu T, Jacob DJ, Chance K, Kurosu TP, Guenther A, Wiedinmyer C, Stanton JC,
Pilling MJ, Pressley SN, Lamb B, Sumner AL. Quantifying the seasonal and interannual
variability of North American isoprene emissions using satellite observations of the formaldehyde
column. J Geophys Res. 2006; 111(D12):D12315.
Paulot F, Crounse JD, Kjaergaard HG, Kürten A, St Clair JM, Seinfeld JH, Wennberg PO. Unexpected
epoxide formation in the gas-phase photooxidation of isoprene. Science. 2009; 325:730–733. DOI:
10.1126/science.1172910 [PubMed: 19661425]
Rivera-Rios JC, Nguyen TB, Crounse JD, Jud W, St Clair JM, Mikoviny T, Gilman JB, Lerner BM,
Kaiser JB, de Gouw J, Wisthaler A, Hansel A, Wennberg PO, Seinfeld JH, Keutsch FN.
Conversion of hydroperoxides to carbonyls in field and laboratory instrumentation: Observational
bias in diagnosing pristine versus anthropogenically controlled atmospheric chemistry. Geophys
Res Lett. 2014; 41:8645–8651. DOI: 10.1002/2014GL061919
St. Clair et al.
Page 9
Atmos Meas Tech
. Author manuscript; available in PMC 2018 April 08.
NASA Author Manuscript
NASA Author Manuscript
NASA Author Manuscript
St Clair JM, McCabe DC, Crounse JD, Steiner U, Wennberg PO. Chemical ionization tandem mass
spectrometer for the in situ measurement of methyl hydrogen peroxide. Rev Sci Instrum. 2010;
81:094102. [PubMed: 20886995]
St Clair JM, Rivera-Rios JC, Crounse JD, Knap HC, Bates KH, Teng AP, Jørgensen S, Kjaergaard HG,
Keutsch FN, Wennberg PO. Kinetics and Products of the Reaction of the First-Generation Isoprene
Hydroxy Hydroperoxide (ISOPOOH) with OH. J Phys Chem A. 2015
Teng AP, Crounse JD, Wennberg PO. Isoprene peroxy radical dynamics. n.d.
Toon OB, Maring H, Dibb J, Ferrare R, Jacob DJ, Jensen EJ, Luo ZJ, Mace GG, Pan LL, Pfister L,
Rosenlof KH, Redemann J, Reid JS, Singh HB, Thompson AM, Yokelson R, Minnis P, Chen G,
Jucks KW, Pszenny A. Planning, implementation, and scientific goals of the Studies of Emissions
and Atmospheric Composition, Clouds and Climate Coupling by Regional Surveys (SEAC4RS)
field mission. J Geophys Res Atmos. 2016; 121:4967–5009. DOI: 10.1002/2015JD024297
Wolfe GM, Kaiser J, Hanisco TF, Keutsch FN, De Gouw JA, Gilman JB, Graus M, Hatch CD,
Holloway J, Horowitz LW, Lee BH, Lerner BM, Lopez-Hilifiker F, Mao J, Marvin MR, Peischl J,
Pollack IB, Roberts JM, Ryerson TB, Thornton JA, Veres PR, Warneke C. Formaldehyde
production from isoprene oxidation across NOx regimes. Atmos Chem Phys. 2016; 16:2597–2610.
DOI: 10.5194/acp-16-2597-2016 [PubMed: 29619046]
St. Clair et al.
Page 10
Atmos Meas Tech
. Author manuscript; available in PMC 2018 April 08.
NASA Author Manuscript
NASA Author Manuscript
NASA Author Manuscript
Figure 1.
The major isomers of ISOPOOH and the observed hydrocarbon products of their instrument
surface-mediated decomposition: methacrolein (MACR), methyl vinyl ketone (MVK), and
formaldehyde (HCHO).
St. Clair et al.
Page 11
Atmos Meas Tech
. Author manuscript; available in PMC 2018 April 08.
NASA Author Manuscript
NASA Author Manuscript
NASA Author Manuscript
Figure 2.
Experimental set up. During experiments with untreated stainless tubing, the sample line
passed through the tubing (item A) before proceeding to the instruments. The ISAF inlet
tubing location is noted by item B.
St. Clair et al.
Page 12
Atmos Meas Tech
. Author manuscript; available in PMC 2018 April 08.
NASA Author Manuscript
NASA Author Manuscript
NASA Author Manuscript
Figure 3.
(Top Panel) Time series of dry air conversion experiment E10 with (1,2)-ISOPOOH at three
ISOPOOH mixing ratios. (Bottom Panel) Linear fits to experiments E1 (dashed blue line)
and E10 (dashed red line) individually and together (solid black line).
St. Clair et al.
Page 13
Atmos Meas Tech
. Author manuscript; available in PMC 2018 April 08.
NASA Author Manuscript
NASA Author Manuscript
NASA Author Manuscript
Figure 4.
Temperature dependence of ISOPOOH conversion to HCHO for the ISAF inlet and
untreated stainless steel tubing. Data shown with symbols (E2, E4) are mean values, and
data shown with lines (E3, E6) are 5° C wide binned mean values.
St. Clair et al.
Page 14
Atmos Meas Tech
. Author manuscript; available in PMC 2018 April 08.
NASA Author Manuscript
NASA Author Manuscript
NASA Author Manuscript
Figure 5.
SEAC
4
RS flight on 6 September 2013. Top panel: Time series of ISAF HCHO (black line),
CIT ISOPOOH (blue line), and potential HCHO signal from prompt ISOPOOH conversion
(red line). Bottom panel: Percent of the HCHO observed that might be from prompt
ISOPOOH conversion (red line) and aircraft altitude (black line).
St. Clair et al.
Page 15
Atmos Meas Tech
. Author manuscript; available in PMC 2018 April 08.
NASA Author Manuscript
NASA Author Manuscript
NASA Author Manuscript
Figure 6.
Hypothesized HCHO signal from delayed ISOPOOH conversion, shown for part of
SEAC
4
RS flight on 6 September 2013. Top panel: Time series of ISAF HCHO (black line),
CIT ISOPOOH (blue line), potential HCHO signal from prompt ISOPOOH conversion (red
line), and potential HCHO signal from delayed ISOPOOH conversion (cyan line). Bottom
panel: Altitude (black line) and percentage of HCHO that might be from delayed ISOPOOH
conversion (red line).
St. Clair et al.
Page 16
Atmos Meas Tech
. Author manuscript; available in PMC 2018 April 08.
NASA Author Manuscript
NASA Author Manuscript
NASA Author Manuscript
NASA Author Manuscript
NASA Author Manuscript
NASA Author Manuscript
St. Clair et al.
Page 17
Table 1
List of Experiments
Experiment
Compound
Description
E1
(1,2)-ISOPOOH
Dry
E2
(1,2)-ISOPOOH
Dry, with and without untreated stainless tubing
E3
(1,2)-ISOPOOH
Dry, ISAF inlet tubing temperature
E4
(4,3)-ISOPOOH
Dry, with untreated stainless tubing
E5
(4,3)-ISOPOOH
Dry
E6
(4,3)-ISOPOOH
Dry, ISAF inlet tubing temperature
E7
(1,2)-ISOPOOH
Humid
E8
(4,3)-ISOPOOH
Humid
E9
(4,3)-ISOPOOH
Dry
E10
(1,2)-ISOPOOH
Dry
Atmos Meas Tech
. Author manuscript; available in PMC 2018 April 08.