Items where Research Group Name is "COVID-19"

A

Abernathy, Morgan E. and Dam, Kim-Marie A. and Esswein, Shannon R. et al. (2021) How Antibodies Recognize Pathogenic Viruses: Structural Correlates of Antibody Neutralization of HIV-1, SARS-CoV-2, and Zika. Viruses, 13 (10). Art. No. 2106. ISSN 1999-4915. PMCID PMC8537525. doi:10.3390/v13102106. https://resolver.caltech.edu/CaltechAUTHORS:20211021-175154754

Agranov, Marina and Elliott, Matt and Ortoleva, Pietro (2021) The importance of Social Norms against Strategic Effects: The case of Covid-19 vaccine uptake. Economics Letters, 206 . Art. No. 109979. ISSN 0165-1765. PMCID PMC8252706. doi:10.1016/j.econlet.2021.109979. https://resolver.caltech.edu/CaltechAUTHORS:20210728-211627192

Ames, Aaron D. and Molnár, Tamás G. and Singletary, Andrew W. et al. (2020) Safety-Critical Control of Active Interventions for COVID-19 Mitigation. IEEE Access, 8 . pp. 188454-188474. ISSN 2169-3536. PMCID PMC8545284. https://resolver.caltech.edu/CaltechAUTHORS:20200706-130358309

Ahmed, M. Arslan and Behbahani, Amir H. and Brückner, Adrian et al. (2020) The precarious position of postdocs during COVID-19. Science, 368 (6494). pp. 957-958. ISSN 0036-8075. doi:10.1126/science.abc5143. https://resolver.caltech.edu/CaltechAUTHORS:20200528-120127437

B

Braet, Sean M. and Buckley, Theresa S. C. and Venkatakrishnan, Varun et al. (2023) Timeline of changes in spike conformational dynamics in emergent SARS-CoV-2 variants reveal progressive stabilization of trimer stalk with altered NTD dynamics. eLife, 12 . Art. No. e82584. ISSN 2050-084X. PMCID PMC10049203. doi:10.7554/elife.82584. https://resolver.caltech.edu/CaltechAUTHORS:20230322-393072000.2

Braet, Sean M. and Buckley, Theresa S. C. and Venkatakrishnan, Varun et al. (2022) Timeline of changes in spike conformational dynamics in emergent SARS-CoV-2 variants reveal progressive stabilization of trimer stalk and enhanced NTD dynamics. . doi:10.1101/2022.08.26.505369. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20230322-368453000.40

Białobrzeska, Wioleta and Ficek, Mateusz and Dec, Bartłomiej et al. (2022) Performance of electrochemical immunoassays for clinical diagnostics of SARS-CoV-2 based on selective nucleocapsid N protein detection: Boron-doped diamond, gold and glassy carbon evaluation. Biosensors and Bioelectronics, 209 . Art. No. 114222. ISSN 0956-5663. PMCID PMC8989705. doi:10.1016/j.bios.2022.114222. https://resolver.caltech.edu/CaltechAUTHORS:20220412-226237000

Barnes, Christopher and Scheid, Johannes F. and Eraslan, Basak et al. (2021) Structural insights into antibody-mediated neutralization of SARS-CoV-2. Glycobiology, 31 (12). pp. 1696-1697. ISSN 0959-6658. doi:10.1093/glycob/cwab121. https://resolver.caltech.edu/CaltechAUTHORS:20220415-214637408

Brogan, Daniel J. and Chaverra-Rodriguez, Duverney and Lin, Calvin P. et al. (2021) Development of a Rapid and Sensitive CasRx-Based Diagnostic Assay for SARS-CoV-2. ACS Sensors, 6 (11). pp. 3957-3966. ISSN 2379-3694. PMCID PMC8577378. doi:10.1021/acssensors.1c01088. https://resolver.caltech.edu/CaltechAUTHORS:20211102-222421621

Brune, Karl D. and Liekniņa, Ilva and Sutov, Grigorij et al. (2021) N-Terminal Modification of Gly-His-Tagged Proteins with Azidogluconolactone. ChemBioChem, 22 (22). pp. 3199-3207. ISSN 1439-4227. doi:10.1002/cbic.202100381. https://resolver.caltech.edu/CaltechAUTHORS:20211008-224615060

Booeshaghi, A. Sina and Pachter, Lior (2021) Normalization of single-cell RNA-seq counts by log(x+1)* or log(1+x)*. Bioinformatics, 37 (15). pp. 2223-2224. ISSN 1367-4803. PMCID PMC7989636. doi:10.1093/bioinformatics/btab085. https://resolver.caltech.edu/CaltechAUTHORS:20200520-084505912

Bjorkman, Pamela (2021) Neutralizing antibodies against coronaviruses. Microscopy and Microanalysis, 27 (S1). pp. 1112-1113. ISSN 1431-9276. doi:10.1017/s1431927621004177. https://resolver.caltech.edu/CaltechAUTHORS:20210930-205624907

Bjorkman, Pamela J. (2021) Neutralizing antibodies against coronaviruses. In: 262nd ACS National Meeting & Exposition, 22-26 August 2021, Atlanta, GA. https://resolver.caltech.edu/CaltechAUTHORS:20211214-231246715

Bulchandani, Vir Bannerjee and Shivam, Saumya and Moudgalya, Sanjay et al. (2021) Digital herd immunity and COVID-19. Physical Biology, 18 (4). Art. No. 045004. ISSN 1478-3967. doi:10.1088/1478-3975/abf5b4. https://resolver.caltech.edu/CaltechAUTHORS:20210409-145940364

Bloom, Joshua S. and Sathe, Laila and Munugala, Chetan et al. (2021) Massively scaled-up testing for SARS-CoV-2 RNA via next-generation sequencing of pooled and barcoded nasal and saliva samples. Nature Biomedical Engineering, 5 (7). pp. 657-665. ISSN 2157-846X. PMCID PMC7480060. doi:10.1038/s41551-021-00754-5. https://resolver.caltech.edu/CaltechAUTHORS:20201119-132151980

Bloom, Jesse D. and Chan, Yujia Alina and Baric, Ralph S. et al. (2021) Investigate the origins of COVID-19. Science, 372 (6543). p. 694. ISSN 0036-8075. doi:10.1126/science.abj0016. https://resolver.caltech.edu/CaltechAUTHORS:20210513-115757419

Bain, William G. and Peñaloza, Hernán F. and Ladinsky, Mark S. et al. (2021) Lower Respiratory Tract Myeloid Cells Harbor SARS-Cov-2 and Display an Inflammatory Phenotype. CHEST, 159 (3). pp. 963-966. ISSN 0012-3692. PMCID PMC7671922; PMC7430612. https://resolver.caltech.edu/CaltechAUTHORS:20201119-133947323

Bárcena, Montserrat and Barnes, Christopher O. and Beck, Martin et al. (2021) Structural biology in the fight against COVID-19. Nature Structural & Molecular Biology, 28 (1). pp. 2-7. ISSN 1545-9993. doi:10.1038/s41594-020-00544-8. https://resolver.caltech.edu/CaltechAUTHORS:20210119-071807621

Barnes, Christopher O. and Jette, Claudia A. and Abernathy, Morgan E. et al. (2020) SARS-CoV-2 neutralizing antibody structures inform therapeutic strategies. Nature, 588 (7839). pp. 682-687. ISSN 0028-0836. PMCID PMC8092461. doi:10.1038/s41586-020-2852-1. https://resolver.caltech.edu/CaltechAUTHORS:20200928-142205501

Booeshaghi, A. Sina and Lubock, Nathan B. and Cooper, Aaron R. et al. (2020) Reliable and accurate diagnostics from highly multiplexed sequencing assays. Scientific Reports, 10 . Art. No. 21759. ISSN 2045-2322. PMCID PMC7730459. https://resolver.caltech.edu/CaltechAUTHORS:20200601-101849395

Banerjee, Abhik K. and Blanco, Mario R. and Bruce, Emily A. et al. (2020) SARS-CoV-2 disrupts splicing, translation, and protein trafficking to suppress host defenses. Cell, 183 (5). pp. 1325-1339. ISSN 0092-8674. PMCID PMC7543886. doi:10.1016/j.cell.2020.10.004. https://resolver.caltech.edu/CaltechAUTHORS:20201008-083809040

Brogan, Daniel J. and Chaverra-Rodriguez, Duverney and Lin, Calvin P. et al. (2020) A Sensitive, Rapid, and Portable CasRx-based Diagnostic Assay for SARS-CoV-2. . doi:10.1101/2020.10.14.20212795. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20201119-093121134

Barnes, Christopher O. and Jette, Claudia A. and Abernathy, Morgan E. et al. (2020) Structural classification of neutralizing antibodies against the SARS-CoV-2 spike receptor-binding domain suggests vaccine and therapeutic strategies. . doi:10.1101/2020.08.30.273920. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20200908-082702811

Barnes, Christopher O. and West, Anthony P., Jr. and Huey-Tubman, Kathryn E. et al. (2020) Structures of Human Antibodies Bound to SARS-CoV-2 Spike Reveal Common Epitopes and Recurrent Features of Antibodies. Cell, 182 (4). pp. 828-842. ISSN 0092-8674. PMCID PMC7311918; PMC7302198. https://resolver.caltech.edu/CaltechAUTHORS:20200601-100510853

Booeshaghi, A. Sina and Tan, Fayth and Renton, Benjamin et al. (2020) Markedly heterogeneous COVID-19 testing plans among US colleges and universities. . doi:10.1101/2020.08.09.20171223. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20200824-142429940

Booeshaghi, A. Sina and Pachter, Lior (2020) Decrease in ACE2 mRNA expression in aged mouse lung. . doi:10.1101/2020.04.02.021451. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20200406-101324270

Bar-On, Yinon M. and Flamholz, Avi and Phillips, Rob et al. (2020) SARS-CoV-2 (COVID-19) by the numbers. eLife, 9 . Art. No. e57309. ISSN 2050-084X. PMCID PMC7224694. doi:10.7554/elife.57309. https://resolver.caltech.edu/CaltechAUTHORS:20200331-215659202

C

Carter, Alyssa M. and Winnett, Alexander Viloria and Romano, Anna E. et al. (2023) Laboratory Evaluation Links Some False-Positive COVID-19 Antigen Test Results Observed in a Field Study to a Specific Lot of Test Strips. Open Forum Infectious Diseases, 10 (1). Art. No. ofac701. ISSN 2328-8957. PMCID PMC9887260. doi:10.1093/ofid/ofac701. (In Press) https://resolver.caltech.edu/CaltechAUTHORS:20230130-263514000.2

Cable, Jennifer and Fauci, Anthony and Dowling, William E. et al. (2022) Lessons from the pandemic: Responding to emerging zoonotic viral diseases — a Keystone Symposia report. Annals of the New York Academy of Sciences, 1518 (1). pp. 209-225. ISSN 0077-8923. PMCID PMC9538336. doi:10.1111/nyas.14898. https://resolver.caltech.edu/CaltechAUTHORS:20221017-15547800.42

Cramer, Estee Y. and Huang, Yuxin and Wang, Yijin et al. (2022) The United States COVID-19 Forecast Hub dataset. Scientific Data, 9 . Art. No. 462. ISSN 2052-4463. PMCID PMC8236414. doi:10.1038/s41597-022-01517-w. https://resolver.caltech.edu/CaltechAUTHORS:20211105-194210514

Cable, Jennifer and Rappuoli, Rino and Klemm, Elizabeth J. et al. (2022) Innovative vaccine approaches—a Keystone Symposia report. Annals of the New York Academy of Sciences, 1511 (1). pp. 59-86. ISSN 0077-8923. doi:10.1111/nyas.14739. https://resolver.caltech.edu/CaltechAUTHORS:20220202-543652000

Cao, Jian and Ramirez, Christina and Alvarez, R. Michael (2022) The politics of vaccine hesitancy in the United States. Social Science Quarterly, 103 (1). pp. 42-54. ISSN 0038-4941. doi:10.1111/ssqu.13106. https://resolver.caltech.edu/CaltechAUTHORS:20211203-174950438

Cheng, Kai-Wen and Li, Shan and Wang, Feng et al. (2021) Impacts of p97 on Proteome Changes in Human Cells during Coronaviral Replication. Cells, 10 (11). Art. No. 2953. ISSN 2073-4409. PMCID PMC8616207. doi:10.3390/cells10112953. https://resolver.caltech.edu/CaltechAUTHORS:20211117-180505059

Cohen, Alexander A. and Gnanapragasam, Priyanthi N. P. and Lee, Yu E. et al. (2021) Mosaic nanoparticles elicit cross-reactive immune responses to zoonotic coronaviruses in mice. Science, 371 (6530). pp. 735-741. ISSN 0036-8075. PMCID PMC7928838 ; PMC7685334. https://resolver.caltech.edu/CaltechAUTHORS:20201118-120755714

Crits-Christoph, Alexander and Kantor, Rose S. and Olm, Matthew R. et al. (2021) Genome Sequencing of Sewage Detects Regionally Prevalent SARS-CoV-2 Variants. mBio, 12 (1). Art. No. e02703-20. ISSN 2150-7511. PMCID PMC7845645. https://resolver.caltech.edu/CaltechAUTHORS:20201119-100731171

Contreras, Sebastián and Villavicencio, H. Andrés and Medina-Ortiz, David et al. (2020) Real-Time Estimation of R_t for Supporting Public-Health Policies Against COVID-19. Frontiers in Public Health, 8 . Art. No. 556689. ISSN 2296-2565. PMCID PMC7783316. https://resolver.caltech.edu/CaltechAUTHORS:20201120-072926742

Contreras, Sebastián and Biron-Lattes, Juan Pablo and Villavicencio, H. Andrés et al. (2020) Statistically-based methodology for revealing real contagion trends and correcting delay-induced errors in the assessment of COVID-19 pandemic. Chaos, Solitons, and Fractals, 139 . Art. No. 110087. ISSN 0960-0779. PMCID PMC7341964. doi:10.1016/j.chaos.2020.110087. https://resolver.caltech.edu/CaltechAUTHORS:20200706-145145631

Contreras, Sebastián and Villavicencio, H. Andrés and Medina-Ortiz, David et al. (2020) A multi-group SEIRA model for the spread of COVID-19 among heterogeneous populations. Chaos, Solitons, and Fractals, 136 . Art. No. 109925. ISSN 0960-0779. PMCID PMC7247502. doi:10.1016/j.chaos.2020.109925. https://resolver.caltech.edu/CaltechAUTHORS:20200608-115356852

Cohen, Bruce N. and Nichols, Aaron L. and Grant, Stephen et al. (2020) Successful Cessation Programs that Reduce Comorbidity May Explain Surprisingly Low Smoking Rates Among Hospitalized COVID-19 Patients. . doi:10.32388/WURFH0. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20200526-135356434

Chour, William and Xu, Alexander M. and Ng, Alphonsus H. C. et al. (2020) Shared Antigen-specific CD8⁺ T cell Responses Against the SARS-COV-2 Spike Protein in HLA A*02:01 COVID-19 Participants. . doi:10.1101/2020.05.04.20085779. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20201120-071520503

Cohen, Alexander A. and van Doremalen, Neeltje and Greaney, Allison J. et al. (2022) Mosaic RBD nanoparticles protect against multiple sarbecovirus challenges in animal models. bioRxiv . doi:10.1101/2022.03.25.485875. (Submitted) https://resolver.caltech.edu/CaltechAUTHORS:20220329-901344222

D

Dommer, Abigail and Casalino, Lorenzo and Kearns, Fiona et al. (2023) #COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol. International Journal of High Performance Computing Applications, 37 (1). pp. 28-44. ISSN 1094-3420. PMCID PMC9527558. doi:10.1177/10943420221128233. https://resolver.caltech.edu/CaltechAUTHORS:20221017-15547800.39

Debnath, Ramit and Bardhan, Ronita and Misra, Ashwin et al. (2022) Lockdown impacts on residential electricity demand in India: A data-driven and non-intrusive load monitoring study using Gaussian mixture models. Energy Policy, 164 . Art. No. 112886. ISSN 0301-4215. PMCID PMC9022708. doi:10.1016/j.enpol.2022.112886. https://resolver.caltech.edu/CaltechAUTHORS:20220317-376372000

Dommer, Abigail and Casalino, Lorenzo and Kearns, Fiona et al. (2021) #COVIDisAirborne: AI-Enabled Multiscale Computational Microscopy of Delta SARS-CoV-2 in a Respiratory Aerosol. . doi:10.1101/2021.11.12.468428. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20220208-947187000

De Gasparo, Raoul and Pedotti, Mattia and Simonelli, Luca et al. (2021) Bispecific IgG neutralizes SARS-CoV-2 variants and prevents escape in mice. Nature, 593 (7859). pp. 424-428. ISSN 0028-0836. PMCID PMC8330819. doi:10.1038/s41586-021-03461-y. https://resolver.caltech.edu/CaltechAUTHORS:20210308-130543968

E

Esbin, Meagan N. and Whitney, Oscar N. and Chong, Shasha et al. (2020) Overcoming the bottleneck to widespread testing: a rapid review of nucleic acid testing approaches for COVID-19 detection. RNA, 26 (7). pp. 771-783. ISSN 1355-8382. PMCID PMC7297120. doi:10.1261/rna.076232.120. https://resolver.caltech.edu/CaltechAUTHORS:20210902-234003301

F

Fielding-Miller, Rebecca and Karthikeyan, Smruthi and Gaines, Tommi et al. (2023) Safer at school early alert: an observational study of wastewater and surface monitoring to detect COVID-19 in elementary schools. Lancet Regional Health - Americas, 19 . Art. No. 100449. ISSN 2667-193X. PMCID PMC9939935. doi:10.1016/j.lana.2023.100449. https://resolver.caltech.edu/CaltechAUTHORS:20230313-697847000.2

Fan, Chengcheng and Cohen, Alexander A. and Park, Miso et al. (2022) Neutralizing monoclonal antibodies elicited by mosaic RBD nanoparticles bind conserved sarbecovirus epitopes. Immunity, 55 (12). 2419-2435.e10. ISSN 1074-7613. PMCID PMC9606073. doi:10.1016/j.immuni.2022.10.019. https://resolver.caltech.edu/CaltechAUTHORS:20230117-369491100.9

Fielding-Miller, Rebecca and Karthikeyan, Smruthi and Gaines, Tommi et al. (2021) Wastewater and surface monitoring to detect COVID-19 in elementary school settings: The Safer at School Early Alert project. . doi:10.1101/2021.10.19.21265226. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20221215-540378000.16

Fan, Hao and Wang, Yuan and Zhao, Chuanfeng et al. (2021) The Role of Primary Emission and Transboundary Transport in the Air Quality Changes During and After the COVID‐19 Lockdown in China. Geophysical Research Letters, 48 (7). Art. No. e2020GL091065. ISSN 0094-8276. doi:10.1029/2020gl091065. https://resolver.caltech.edu/CaltechAUTHORS:20210430-124915477

Flyak, Andrew I. (2021) SARS-CoV-2 B cell receptor signatures in risk populations. Journal of Clinical Investigation, 131 (1). Art. No. e144685. ISSN 0021-9738. PMCID PMC7773361. doi:10.1172/JCI144685. https://resolver.caltech.edu/CaltechAUTHORS:20201202-081646342

Flynn, Michael J. and Snitser, Olga and Flynn, James et al. (2020) A simple direct RT-LAMP SARS-CoV-2 saliva diagnostic. . doi:10.1101/2020.11.19.20234948. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20201123-140413855

Fang, Jennifer and Liu, Yiju T. and Lee, Ernest Y. et al. (2020) Telehealth Solutions for In-hospital Communication with Patients Under Isolation During COVID-19. Western Journal of Emergency Medicine, 21 (4). pp. 801-806. ISSN 1936-900X. PMCID PMC7390554. doi:10.5811/westjem.2020.5.48165. https://resolver.caltech.edu/CaltechAUTHORS:20200803-094606578

Flyak, Andrew I. and Ruiz, Stormy E. and Salas, Jordan et al. (2020) An ultralong CDRH2 in HCV neutralizing antibody demonstrates structural plasticity of antibodies against E2 glycoprotein. eLife, 9 . Art. No. e53169. ISSN 2050-084X. PMCID PMC7064334. doi:10.7554/elife.53169. https://resolver.caltech.edu/CaltechAUTHORS:20200312-143121974

G

Gu, Alan Y. and Zhu, Yanzhe and Li, Jing et al. (2022) Speech-generated aerosol settling times and viral viability can improve COVID-19 transmission prediction. Environmental Science: Atmospheres, 2 (1). pp. 34-45. ISSN 2634-3606. doi:10.1039/d1ea00013f. https://resolver.caltech.edu/CaltechAUTHORS:20211209-456403000

Greenwald, Hannah D. and Kennedy, Lauren C. and Hinkle, Adrian et al. (2021) Tools for interpretation of wastewater SARS-CoV-2 temporal and spatial trends demonstrated with data collected in the San Francisco Bay Area. Water Research X, 12 . Art. No. 100111. ISSN 2589-9147. PMCID PMC8325558. doi:10.1016/j.wroa.2021.100111. https://resolver.caltech.edu/CaltechAUTHORS:20210510-105354773

Grant, Stephen N. and Lester, Henry A. (2021) Regulation of epithelial sodium channel activity by SARS-CoV-1 and SARS-CoV-2 proteins. Biophysical Journal, 120 (14). pp. 2805-2813. ISSN 0006-3495. PMCID PMC8238646. doi:10.1016/j.bpj.2021.06.005. https://resolver.caltech.edu/CaltechAUTHORS:20210714-140716932

Greaney, Allison J. and Starr, Tyler N. and Barnes, Christopher O. et al. (2021) Mapping mutations to the SARS-CoV-2 RBD that escape binding by different classes of antibodies. Nature Communications, 12 . Art. No. 4196. ISSN 2041-1723. PMCID PMC8263750; PMC7987015. doi:10.1038/s41467-021-24435-8. https://resolver.caltech.edu/CaltechAUTHORS:20210322-133440105

Günther, Sebastian and Reinke, Patrick Y. A. and Fernández-García, Yaiza et al. (2021) X-ray screening identifies active site and allosteric inhibitors of SARS-CoV-2 main protease. Science, 372 (6542). pp. 642-646. ISSN 0036-8075. PMCID PMC8224385. doi:10.1126/science.abf7945. https://resolver.caltech.edu/CaltechAUTHORS:20201113-100151878

Gaebler, Christian and Wang, Zijun and Lorenzi, Julio C. C. et al. (2021) Evolution of antibody immunity to SARS-CoV-2. Nature, 591 (7851). pp. 639-644. ISSN 0028-0836. PMCID PMC8221082; PMC7654855. doi:10.1038/s41586-021-03207-w. https://resolver.caltech.edu/CaltechAUTHORS:20201105-121857214

Ghaffarizadeh, S. Aryan and Ghaffarizadeh, S. Arman and Behbahani, Amir H. et al. (2021) Life and Work of Researchers Trapped in the COVID-19 Pandemic Vicious Cycle. . doi:10.1101/2021.02.02.429476. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20210203-144656191

Green, Sydnee A. and Wigman, Benjamin and Nistanaki, Sepand K. et al. (2020) Chemocatalytic Amplification Probes Enable Transcriptionally-Regulated Au(I)-Catalysis in E. coli and Sensitive Detection of SARS-CoV-2 RNA Fragments. . doi:10.26434/chemrxiv.12915761.v2. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20210811-225351023

Garza-López, Roberto A. and Kozak, John J. and Gray, Harry B. (2020) Copper(II) Inhibition of the SARS-CoV-2 Main Protease. American Chemical Society . doi:10.26434/chemrxiv.12673436.v1. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20210629-204239084

H

Hills, Rory A. and Tan, Tiong Kit and Cohen, Alexander A. et al. (2023) Multiviral Quartet Nanocages Elicit Broad Anti-Coronavirus Responses for Proactive Vaccinology. . doi:10.1101/2023.02.24.529520. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20230316-182086000.11

Hoffmann, Magnus A. G. and Yang, Zhi and Huey-Tubman, Kathryn E. et al. (2022) ESCRT recruitment to mRNA-encoded SARS-CoV-2 spike induces virus-like particles and enhanced antibody responses. . doi:10.1101/2022.12.26.521940. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20230316-182651000.48

Harrison, Neil L. and Abbott, Geoffrey W. and Gentzsch, Martina et al. (2022) How many SARS-CoV-2 “viroporins” are really ion channels? Communications Biology, 5 (1). ISSN 2399-3642. doi:10.1038/s42003-022-03669-2. https://resolver.caltech.edu/CaltechAUTHORS:20220906-252586000

Hjorleifsson, Kristjan E. and Rognvaldsson, Solvi and Jonsson, Hakon et al. (2022) Reconstruction of a large-scale outbreak of SARS-CoV-2 infection in Iceland informs vaccination strategies. Clinical Microbiology and Infection, 28 (6). pp. 852-858. ISSN 1198-743X. PMCID PMC8849849. doi:10.1016/j.cmi.2022.02.012. https://resolver.caltech.edu/CaltechAUTHORS:20220228-862133400

Hensley, Matthew K. and Bain, William G. and Jacobs, Jana et al. (2021) Intractable Coronavirus Disease 2019 (COVID-19) and Prolonged Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Replication in a Chimeric Antigen Receptor-Modified T-Cell Therapy Recipient: A Case Study. Clinical Infectious Diseases, 73 (3). e815-e821. ISSN 1058-4838. PMCID PMC7929077. doi:10.1093/cid/ciab072. https://resolver.caltech.edu/CaltechAUTHORS:20210201-145608486

Hoffmann, Magnus A. G. and Kieffer, Collin and Bjorkman, Pamela J. (2021) In vitro characterization of engineered red blood cells as viral traps against HIV-1 and SARS-CoV-2. Molecular Therapy - Methods and Clinical Development, 21 . pp. 161-170. ISSN 2329-0501. PMCID PMC7944778. doi:10.1016/j.omtm.2021.03.003. https://resolver.caltech.edu/CaltechAUTHORS:20201222-101000542

Harris-Lovett, Sasha and Nelson, Kara L. and Beamer, Paloma et al. (2021) Wastewater Surveillance for SARS-CoV-2 on College Campuses: Initial Efforts, Lessons Learned, and Research Needs. International Journal of Environmental Research and Public Health, 18 (9). Art. No. 4455. ISSN 1660-4601. PMCID PMC8122720. doi:10.3390/ijerph18094455. https://resolver.caltech.edu/CaltechAUTHORS:20221215-540206000.10

Harris-Lovett, Sasha and Nelson, Kara and Beamer, Paloma et al. (2021) Wastewater surveillance for SARS-CoV-2 on college campuses: Initial efforts, lessons learned and research needs. . doi:10.1101/2021.02.01.21250952. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20221215-540238000.11

J

Ji, Jenny and Winnett, Alexander Viloria and Shelby, Natasha et al. (2023) Index Cases First Identified by Nasal-Swab Rapid COVID-19 Tests Had More Transmission to Household Contacts Than Cases Identified by Other Test Types. . doi:10.1101/2023.03.09.23286855. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20230323-420614000.1

Jo, HyeongChan and Kim, Juhyun and Huang, Tzu-Chen et al. (2022) condLSTM-Q: A novel deep learning model for predicting COVID-19 mortality in fine geographical scale. Quantitative Biology, 10 (2). pp. 125-138. ISSN 2095-4689. doi:10.15302/j-qb-021-0276. https://resolver.caltech.edu/CaltechAUTHORS:20220823-628672500.759

Jacobs, Jana L. and Bain, William and Naqvi, Asma et al. (2022) Severe Acute Respiratory Syndrome Coronavirus 2 Viremia Is Associated With Coronavirus Disease 2019 Severity and Predicts Clinical Outcome. Clinical Infectious Diseases, 74 (9). pp. 1525-1533. ISSN 1058-4838. PMCID PMC9070832. doi:10.1093/cid/ciab686. https://resolver.caltech.edu/CaltechAUTHORS:20210816-230140809

Jiang, Yonghou and Duffy, Fergal and Hadlock, Jennifer et al. (2021) Angiotensin II receptor I auto-antibodies following SARS-CoV-2 infection. PLoS ONE, 16 (11). Art. No. e0259902. ISSN 1932-6203. PMCID PMC8598062. doi:10.1371/journal.pone.0259902. https://resolver.caltech.edu/CaltechAUTHORS:20210714-152527909

Ji, Jenny and Winnett, Alexander and Shelby, Natasha et al. (2021) Modulating Factors of Household Transmission of SARS‑CoV‑2 in a Community-Based Study. American Journal of Tropical Medicine and Hygiene, 105 (5). p. 313. ISSN 0002-9637. doi:10.4269/ajtmh.abstract2021. https://resolver.caltech.edu/CaltechAUTHORS:20220512-142847077

Jain, Siddharth and Xiao, Xiongye and Bogdan, Paul et al. (2021) Generator based approach to analyze mutations in genomic datasets. Scientific Reports, 11 . Art. No. 21084. ISSN 2045-2322. PMCID PMC8548350. doi:10.1038/s41598-021-00609-8. https://resolver.caltech.edu/CaltechAUTHORS:20200728-093329251

Jette, Claudia A. and Cohen, Alexander A. and Gnanapragasam, Priyanthi N. P. et al. (2021) Broad cross-reactivity across sarbecoviruses exhibited by a subset of COVID-19 donor-derived neutralizing antibodies. Cell Reports, 36 (13). Art. No. 109760. ISSN 2211-1247. PMCID PMC8423902; PMC8095199. doi:10.1016/j.celrep.2021.109760. https://resolver.caltech.edu/CaltechAUTHORS:20210429-094548605

Jin, Qixuan (2020) Time Warping Clustering for the Forecast and Analysis of COVID-19. In: 2020 IEEE MIT Undergraduate Research Technology Conference (URTC). IEEE , Piscataway, NJ, pp. 1-5. ISBN 978-1-7281-7571-3. https://resolver.caltech.edu/CaltechAUTHORS:20220121-88735100

Jue, Erik and Ismagilov, Rustem F. (2020) Commercial stocks of SARS-CoV-2 RNA may report low concentration values, leading to artificially increased apparent sensitivity of diagnostic assays. . doi:10.1101/2020.04.28.20077602. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20200519-071416134

K

Kim, Soo-Kyung and Suebka, Sartanee and Gin, Adley et al. (2022) Prediction and experimental validation of drug candidates that bind specifically to the SARS-CoV-2 receptor-binding domain to prevent entry via Angiotensin-converting enzyme 2 (ACE2). . doi:10.26434/chemrxiv-2022-nrhzz. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20230324-284930000.4

Karthikeyan, Smruthi and Levy, Joshua I. and De Hoff, Peter et al. (2022) Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission. Nature, 609 (7925). pp. 101-108. ISSN 0028-0836. PMCID PMC9433318. doi:10.1038/s41586-022-05049-6. https://resolver.caltech.edu/CaltechAUTHORS:20221215-539953000.2

Knyazev, Sergey and Chhugani, Karishma and Sarwal, Varuni et al. (2022) Unlocking capacities of genomics for the COVID-19 response and future pandemics. Nature Methods, 19 (4). pp. 374-380. ISSN 1548-7091. PMCID PMC9467803. doi:10.1038/s41592-022-01444-z. https://resolver.caltech.edu/CaltechAUTHORS:20221215-540336000.14

Kadakia, Shevali and Stratton, Catherine and Wu, Yinfei et al. (2022) The Accessibility of YouTube Fitness Videos for Individuals Who Are Disabled Before and During the COVID-19 Pandemic: Preliminary Application of a Text Analytics Approach. JMIR Formative Research, 6 (2). Art. No. e34176. ISSN 2561-326X. PMCID PMC8849230. doi:10.2196/34176. https://resolver.caltech.edu/CaltechAUTHORS:20220411-77938600

Karthikeyan, Smruthi and Levy, Joshua I. and De Hoff, Peter et al. (2021) Wastewater sequencing uncovers early, cryptic SARS-CoV-2 variant transmission. . doi:10.1101/2021.12.21.21268143. https://resolver.caltech.edu/CaltechAUTHORS:20221215-540121000.6

Karthikeyan, Smruthi and Nguyen, Andrew and McDonald, Daniel et al. (2021) Rapid, Large-Scale Wastewater Surveillance and Automated Reporting System Enable Early Detection of Nearly 85% of COVID-19 Cases on a University Campus. mSystems, 6 (4). Art. No. e0079321. ISSN 2379-5077. PMCID PMC8409724. doi:10.1128/msystems.00793-21. https://resolver.caltech.edu/CaltechAUTHORS:20221215-540495000.23

Knyazev, Sergey and Chhugani, Karishma and Sarwal, Varuni et al. (2021) Unlocking capacities of viral genomics for the COVID-19 pandemic response. . (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20221215-185439493

Kozak, John J. and Gray, Harry B. and Garza-López, Roberto A. (2020) Structural stability of the SARS-CoV-2 main protease: Can metal ions affect function? Journal of Inorganic Biochemistry, 211 . Art. No. 111179. ISSN 0162-0134. PMCID PMC7365078. doi:10.1016/j.jinorgbio.2020.111179. https://resolver.caltech.edu/CaltechAUTHORS:20200716-094538897

L

López-Castro, Teresa and Papini, Santiago and Bauer, Alexandria et al. (2022) Posttraumatic stress disorder symptom trajectories in a 16-month COVID-19 pandemic period. Journal of Traumatic Stress . ISSN 0894-9867. PMCID PMC9880687. doi:10.1002/jts.22899. (In Press) https://resolver.caltech.edu/CaltechAUTHORS:20230113-708423000.15

Luo, Qi and Weightman, Ryan and McQuade, Sean T. et al. (2022) Optimization of vaccination for COVID-19 in the midst of a pandemic. Networks and Heterogeneous Media, 17 (3). pp. 443-466. ISSN 1556-1801. doi:10.3934/nhm.2022016. https://resolver.caltech.edu/CaltechAUTHORS:20220622-933053900

Linardi, Sera and Camerer, Colin (2021) Worker-firm relational contracts in the time of shutdowns: experimental evidence. Experimental Economics, 24 (4). pp. 1267-1293. ISSN 1386-4157. PMCID PMC7883973. doi:10.1007/s10683-020-09697-1. https://resolver.caltech.edu/CaltechAUTHORS:20210302-145031108

Lovenduski, Nicole S. and Chatterjee, Abhishek and Swart, Neil C. et al. (2021) On the Detection of COVID‐Driven Changes in Atmospheric Carbon Dioxide. Geophysical Research Letters, 48 (22). Art. No. e2021GL095396. ISSN 0094-8276. doi:10.1029/2021gl095396. https://resolver.caltech.edu/CaltechAUTHORS:20211124-174243639

Laughner, Joshua L. and Neu, Jessica L. and Schimel, David et al. (2021) Societal shifts due to COVID-19 reveal large-scale complexities and feedbacks between atmospheric chemistry and climate change. Proceedings of the National Academy of Sciences, 118 (46). Art. No. e2109481118. ISSN 0027-8424. PMCID PMC8609622. doi:10.1073/pnas.2109481118. https://resolver.caltech.edu/CaltechAUTHORS:20211111-200602979

Lubecke, Lana C. and Ishmael, Khaldoon and Zheng, Yao et al. (2021) Identification of COVID-19 Type Respiratory Disorders Using Channel State Analysis of Wireless Communications Links. In: 2021 43rd Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC). IEEE , Piscataway, NJ, pp. 7582-7585. ISBN 978-1-7281-1179-7. https://resolver.caltech.edu/CaltechAUTHORS:20220504-115246900

Li, Jing and Zhu, Yanzhe and Wu, Xunyi et al. (2021) Rapid and Inexpensive point-of-use (POU) testing for SARS-CoV-2 quantification with membrane-based in-gel loop-mediated isothermal amplification (mgLAMP) system. In: 262nd ACS National Meeting & Exposition, 22-26 August 2021, Atlanta, GA. https://resolver.caltech.edu/CaltechAUTHORS:20211216-235117074

Livanos, Alexandra E. and Jha, Divya and Cossarini, Francesca et al. (2021) Intestinal Host Response to SARS-CoV-2 Infection and COVID-19 Outcomes in Patients With Gastrointestinal Symptoms. Gastroenterology, 160 (7). pp. 2435-2450. ISSN 0016-5085. PMCID PMC7931673. doi:10.1053/j.gastro.2021.02.056. https://resolver.caltech.edu/CaltechAUTHORS:20210305-070228450

Lukas, Heather and Xu, Changhao and Yu, You et al. (2020) Emerging Telemedicine Tools for Remote COVID-19 Diagnosis, Monitoring, and Management. ACS Nano, 14 (12). pp. 16180-16193. ISSN 1936-0851. PMCID PMC7754783. doi:10.1021/acsnano.0c08494. https://resolver.caltech.edu/CaltechAUTHORS:20201214-130923880

Linsky, Thomas W. and Vergara, Renan and Codina, Nuria et al. (2020) De novo design of potent and resilient hACE2 decoys to neutralize SARS-CoV-2. Science, 370 (6521). pp. 1208-1214. ISSN 0036-8075. PMCID PMC7920261. doi:10.1126/science.abe0075. https://resolver.caltech.edu/CaltechAUTHORS:20201109-112630767

Liu, Zhu and Ciais, Philippe and Deng, Zhu et al. (2020) Near-real-time monitoring of global CO₂ emissions reveals the effects of the COVID-19 pandemic. Nature Communications, 11 . Art. No. 5172. ISSN 2041-1723. PMCID PMC7560733; PMC7709803. https://resolver.caltech.edu/CaltechAUTHORS:20201019-102845933

Lecocq, Thomas and Hicks, Stephen P. and Van Noten, Koen et al. (2020) Global quieting of high-frequency seismic noise due to COVID-19 pandemic lockdown measures. Science, 369 (6509). pp. 1338-1343. ISSN 0036-8075. doi:10.1126/science.abd2438. https://resolver.caltech.edu/CaltechAUTHORS:20200727-071931607

Le, Tianhao and Wang, Yuan and Liu, Lang et al. (2020) Unexpected air pollution with marked emission reductions during the COVID-19 outbreak in China. Science, 369 (6504). pp. 702-706. ISSN 0036-8075. doi:10.1126/science.abb7431. https://resolver.caltech.edu/CaltechAUTHORS:20200622-104138262

M

Morales, Maryann and Ravanfar, Raheleh and Oyala, Paul H. et al. (2022) Copper(II) Binding to the Intrinsically Disordered C-Terminal Peptide of SARS-CoV-2 Virulence Factor Nsp1. Inorganic Chemistry, 61 (24). pp. 8992-8996. ISSN 0020-1669. PMCID PMC9195567. doi:10.1021/acs.inorgchem.2c01329. https://resolver.caltech.edu/CaltechAUTHORS:20220606-736150000

McNeill, V. Faye and Corsi, Richard and Huffman, J. Alex et al. (2022) Room-level ventilation in schools and universities. Atmospheric Environment: X, 13 . Art. No. 100152. ISSN 2590-1621. PMCID PMC8789458. doi:10.1016/j.aeaoa.2022.100152. https://resolver.caltech.edu/CaltechAUTHORS:20210811-170707088

Molnár, Tamás G. and Singletary, Andrew W. and Orosz, Gábor et al. (2021) Safety-Critical Control of Compartmental Epidemiological Models with Measurement Delays. IEEE Control Systems Letters, 5 (5). pp. 1537-1542. ISSN 2475-1456. doi:10.1109/LCSYS.2020.3040948. https://resolver.caltech.edu/CaltechAUTHORS:20201109-140935453

Muecksch, Frauke and Weisblum, Yiska and Barnes, Christopher O. et al. (2021) Affinity maturation of SARS-CoV-2 neutralizing antibodies confers potency, breadth, and resilience to viral escape mutations. Immunity, 54 (8). pp. 1853-1868. ISSN 1074-7613. PMCID PMC8323339. doi:10.1016/j.immuni.2021.07.008. https://resolver.caltech.edu/CaltechAUTHORS:20210802-161329765

Miyazaki, Kayuzuki and Bowman, Kevin and Sekiya, Takashi et al. (2021) Global Tropospheric Ozone Responses to Reduced NOₓ Emissions Linked to the COVID-19 Worldwide Lockdowns. Science Advances, 7 (24). Art. No. eabf7460. ISSN 2375-2548. PMCID PMC8189586. doi:10.1126/sciadv.abf7460. https://resolver.caltech.edu/CaltechAUTHORS:20211116-003049409

Ma, Jianxin and Qi, Xiao and Chen, Haoxuan et al. (2021) Coronavirus Disease 2019 Patients in Earlier Stages Exhaled Millions of Severe Acute Respiratory Syndrome Coronavirus 2 Per Hour. Clinical Infectious Diseases, 72 (10). e652-e654. ISSN 1058-4838. PMCID PMC7499537. doi:10.1093/cid/ciaa1283. https://resolver.caltech.edu/CaltechAUTHORS:20200909-135124154

Muecksch, Frauke and Weisblum, Yiska and Barnes, Christopher O. et al. (2021) Development of potency, breadth and resilience to viral escape mutations in SARS-CoV-2 neutralizing antibodies. . doi:10.1101/2021.03.07.434227. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20210310-101010448

Ming, Yi and Lin, Pu and Naik, Vaishali et al. (2021) Assessing the Influence of COVID‐19 on the Shortwave Radiative Fluxes Over the East Asian Marginal Seas. Geophysical Research Letters, 48 (3). Art. No. e2020GL091699. ISSN 0094-8276. https://resolver.caltech.edu/CaltechAUTHORS:20210107-101118570

Min, Jihong and Sempionatto, Juliane R. and Teymourian, Hazhir et al. (2021) Wearable electrochemical biosensors in North America. Biosensors and Bioelectronics, 172 . Art. No. 112750. ISSN 0956-5663. doi:10.1016/j.bios.2020.112750. https://resolver.caltech.edu/CaltechAUTHORS:20201027-083652858

Medina-Ortiz, David and Contreras, Sebastián and Barrera-Saavedra, Yasna et al. (2020) Country-Wise Forecast Model for the Effective Reproduction Number R_t of Coronavirus Disease. Frontiers in Physics, 8 . Art. No. 304. ISSN 2296-424X. doi:10.3389/fphy.2020.00304. https://resolver.caltech.edu/CaltechAUTHORS:20200831-105818791

N

Nguyen, Minhphuong and Paul, Eric and Mills, Paul K. et al. (2022) Risk of COVID-19 Reinfection and Vaccine Breakthrough Infection, Madera County, California, 2021. . doi:10.1101/2022.01.22.22269105. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20220124-214548000

Nesterenko, Pavlo A. and McLaughlin, Jami and Tsai, Brandon L. et al. (2021) HLA-A∗02:01 restricted T cell receptors against the highly conserved SARS-CoV-2 polymerase cross-react with human coronaviruses. Cell Reports, 37 (13). Art. No. 110167. ISSN 2211-1247. PMCID PMC8660260. doi:10.1016/j.celrep.2021.110167. https://resolver.caltech.edu/CaltechAUTHORS:20211210-240628000

Nazeeri, Albert I. and Hilburn, Isaac A. and Wu, Daw-An et al. (2020) Ethanol-Drying Regeneration of N95 Respirators. . doi:10.1101/2020.04.12.20059709. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20201119-142640062

P

Papini, Santiago and López-Castro, Teresa and Swarbrick, Margaret et al. (2023) Alcohol, cannabis, and nicotine use have distinct associations with COVID-19 pandemic-related experiences: An exploratory Bayesian network analysis across two timepoints. Drug and Alcohol Dependence . Art. No. 109929. ISSN 0376-8716. doi:10.1016/j.drugalcdep.2023.109929. (In Press) https://resolver.caltech.edu/CaltechAUTHORS:20230519-1701000.17

Pushpawela, Buddhi and Amanatidis, Stavros and Huang, Yuanlong et al. (2022) Variability of the penetration of particles through facemasks. Aerosol Science and Technology, 56 (2). pp. 186-203. ISSN 0278-6826. doi:10.1080/02786826.2021.2003291. https://resolver.caltech.edu/CaltechAUTHORS:20220127-913884200

Perdomo, Sammy A. and Ortega, Viviana and Jaramillo-Botero, Andres et al. (2021) SenSARS: A Low-Cost Portable Electrochemical System for Ultra-Sensitive, Near Real-Time, Diagnostics of SARS-CoV-2 Infections. IEEE Transactions on Instrumentation and Measurement, 70 . Art. No. 4007710-10. ISSN 0018-9456. PMCID PMC8843068. doi:10.1109/tim.2021.3119147. https://resolver.caltech.edu/CaltechAUTHORS:20211124-171711818

Parker, H. A. and Hasheminassab, S. and Crounse, J. D. et al. (2020) Impacts of Traffic Reductions Associated With COVID-19 on Southern California Air Quality. Geophysical Research Letters, 47 (23). Art. No. e2020GL090164. ISSN 0094-8276. PMCID PMC7744837. doi:10.1029/2020gl090164. https://resolver.caltech.edu/CaltechAUTHORS:20201124-133212486

R

Rusch, Tessa and Han, Yanting and Liang, Dehua et al. (2023) COVID-Dynamic: A large-scale longitudinal study of socioemotional and behavioral change across the pandemic. Scientific Data, 10 . Art. No. 71. ISSN 2052-4463. PMCID PMC9897616. doi:10.1038/s41597-022-01901-6. https://resolver.caltech.edu/CaltechAUTHORS:20230308-468102500.11

Ravanfar, Raheleh and Sheng, Yuling and Shahgholi, Mona et al. (2022) Surface cysteines could protect the SARS-CoV-2 main protease from oxidative damage. Journal of Inorganic Biochemistry, 234 . Art. No. 111886. ISSN 0162-0134. PMCID PMC9161685. doi:10.1016/j.jinorgbio.2022.111886. https://resolver.caltech.edu/CaltechAUTHORS:20220603-698843600

Rusch, Tessa and Han, Yanting and Liang, Dehua et al. (2021) COVID-Dynamic: A large-scale multifaceted longitudinal study of socioemotional and behavioral change across the pandemic. . doi:10.31234/osf.io/75eyx. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20211008-224631657

Reutrakul, Sirimon and Genco, Matthew and Salinas, Harley et al. (2020) Feasibility of Inpatient Continuous Glucose Monitoring During the COVID-19 Pandemic: Early Experience. Diabetes Care, 43 (10). e137-e138. ISSN 0149-5992. doi:10.2337/dc20-1503. https://resolver.caltech.edu/CaltechAUTHORS:20200818-151255840

Robbiani, Davide F. and Gaebler, Christian and Muecksch, Frauke et al. (2020) Convergent Antibody Responses to SARS-CoV-2 Infection in Convalescent Individuals. Nature, 584 (7821). pp. 437-442. ISSN 0028-0836. PMCID PMC7263513. doi:10.1038/s41586-020-2456-9. https://resolver.caltech.edu/CaltechAUTHORS:20200518-082748284

S

Shrock, Ellen L. and Timms, Richard T. and Kula, Tomasz et al. (2023) Germline-encoded amino acid–binding motifs drive immunodominant public antibody responses. Science, 380 (6640). Art. No. eadc9498. ISSN 0036-8075. doi:10.1126/science.adc9498. https://resolver.caltech.edu/CaltechAUTHORS:20230510-349443100.9

Schulte, Samuel J. and Huang, Jining and Pierce, Niles A. (2023) Hybridization Chain Reaction Lateral Flow Assays for Amplified Instrument-Free At-Home SARS-CoV-2 Testing. ACS Infectious Diseases, 9 (3). pp. 450-458. ISSN 2373-8227. PMCID PMC9924079. doi:10.1021/acsinfecdis.2c00472. https://resolver.caltech.edu/CaltechAUTHORS:20230227-258668000.1

Sellam, Abdellah Zakaria and Benlamoudi, Azeddine and Cid, Clément Antoine et al. (2023) Deep Learning Solution for Quantification of Fluorescence Particles on a Membrane. Sensors, 23 (4). Art. No. 1794. ISSN 1424-8220. PMCID PMC9967937. doi:10.3390/s23041794. https://resolver.caltech.edu/CaltechAUTHORS:20230328-706203600.35

Satta, Sandro and Shahabipour, Fahimeh and Gao, Wei et al. (2022) Engineering viral genomics and nano-liposomes in microfluidic platforms for patient-specific analysis of SARS-CoV-2 variants. Theranostics, 12 (10). pp. 4779-4790. ISSN 1838-7640. PMCID PMC9254234. doi:10.7150/thno.72339. https://resolver.caltech.edu/CaltechAUTHORS:20220810-254276000

Schulte, Samuel J. and Huang, Jining and Pierce, Niles A. (2022) HCR Lateral Flow Assays for Amplified Instrument-Free At-Home SARS-CoV-2 Testing. . doi:10.1101/2022.09.18.508442. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20230322-367067000.13

Schneider, Tapio and Dunbar, Oliver R. A. and Wu, Jinlong et al. (2022) Epidemic management and control through risk-dependent individual contact interventions. PLoS Computational Biology, 18 (6). Art. No. e1010171. ISSN 1553-734X. PMCID PMC9223336. doi:10.1371/journal.pcbi.1010171. https://resolver.caltech.edu/CaltechAUTHORS:20220325-220336231

Savela, Emily S. and Winnett, Alexander Viloria and Romano, Anna E. et al. (2022) Quantitative SARS-CoV-2 Viral-Load Curves in Paired Saliva Samples and Nasal Swabs Inform Appropriate Respiratory Sampling Site and Analytical Test Sensitivity Required for Earliest Viral Detection. Journal of Clinical Microbiology, 60 (2). Art. No. e01785-21. ISSN 0095-1137. PMCID PMC8849374; PMC8043477. doi:10.1128/JCM.01785-21. https://resolver.caltech.edu/CaltechAUTHORS:20210407-080559241

Sottile, Peter D. and Albers, David and DeWitt, Peter E. et al. (2021) Real-time electronic health record mortality prediction during the COVID-19 pandemic: a prospective cohort study. Journal of the American Medical Informatics Association, 28 (11). pp. 2354-2365. ISSN 1067-5027. doi:10.1093/jamia/ocab100. https://resolver.caltech.edu/CaltechAUTHORS:20210120-124914573

Shahrestani, Shane and Chou, Tzu-Chieh and Shang, Kuang-Ming et al. (2021) A wearable eddy current based pulmonary function sensor for continuous non-contact point-of-care monitoring during the COVID-19 pandemic. Scientific Reports, 11 . Art. No. 20144. ISSN 2045-2322. PMCID PMC8505507. doi:10.1038/s41598-021-99682-2. https://resolver.caltech.edu/CaltechAUTHORS:20211011-193517859

Sender, Ron and Bar-On, Yinon M. and Gleizer, Shmuel et al. (2021) The total number and mass of SARS-CoV-2 virions. Proceedings of the National Academy of Sciences of the United States of America, 118 (25). Art. No. e2024815118. ISSN 0027-8424. PMCID PMC8237675; PMC7685332. doi:10.1073/pnas.2024815118. https://resolver.caltech.edu/CaltechAUTHORS:20201118-151353187

Scheid, Johannes F. and Barnes, Christopher O. and Eraslan, Basak et al. (2021) B cell genomics behind cross-neutralization of SARS-CoV-2 variants and SARS-CoV. Cell, 184 (12). pp. 3205-3221. ISSN 0092-8674. PMCID PMC8064835. doi:10.1016/j.cell.2021.04.032. https://resolver.caltech.edu/CaltechAUTHORS:20210429-090704273

Sarma, Anish A. and Sarma, Aartik and Csete, Marie et al. (2021) Control-theoretic immune tradeoffs explain SARS-CoV-2 virulence and transmission variation. . doi:10.1101/2021.04.25.441372. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20210429-095332336

Stratton, Catherine and Kadakia, Shevali and Balikuddembe, Joseph K. et al. (2020) Access denied: the shortage of digitized fitness resources for people with disabilities. Disability and Rehabilitation, 44 (13). pp. 3301-3303. ISSN 0963-8288. doi:10.1080/09638288.2020.1854873. https://resolver.caltech.edu/CaltechAUTHORS:20201215-075622224

T

Tanaka, Shiho and Olson, C. Anders and Barnes, Christopher O. et al. (2022) Rapid identification of neutralizing antibodies against SARS-CoV-2 variants by mRNA display. Cell Reports, 38 (6). Art. No. 110348. ISSN 2211-1247. PMCID PMC8769934; PMC8452091. doi:10.1016/j.celrep.2022.110348. https://resolver.caltech.edu/CaltechAUTHORS:20210915-214123136

Trifan, Anda and Gorgun, Defne and Li, Zongyi et al. (2021) Intelligent Resolution: Integrating Cryo-EM with AI-driven Multi-resolution Simulations to Observe the SARS-CoV-2 Replication-Transcription Machinery in Action. . doi:10.1101/2021.10.09.463779. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20211015-222208091

Toubat, Omar and Berg, Anders H. and Sobhani, Kimia et al. (2021) Manufacturer Signal-to-Cutoff Threshold Underestimates Cumulative Incidence of SARS-CoV-2 Infection: Evidence from the Los Angeles Firefighters Study. . doi:10.1101/2021.04.20.21255829. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20210428-092309187

Tada, Takuya and Fan, Chen and Chen, Jennifer S. et al. (2020) An ACE2 Microbody Containing a Single Immunoglobulin Fc Domain Is a Potent Inhibitor of SARS-CoV-2. Cell Reports, 33 (12). Art. No. 108528. ISSN 2211-1247. PMCID PMC7705358. https://resolver.caltech.edu/CaltechAUTHORS:20201202-101233646

Torrente-Rodríguez, Rebeca M. and Lukas, Heather and Tu, Jiaobing et al. (2020) SARS-CoV-2 RapidPlex: A Graphene-Based Multiplexed Telemedicine Platform for Rapid and Low-Cost COVID-19 Diagnosis and Monitoring. Matter, 3 (6). pp. 1981-1998. ISSN 2590-2385. PMCID PMC7535803. doi:10.1016/j.matt.2020.09.027. https://resolver.caltech.edu/CaltechAUTHORS:20201002-102234974

Turner, Alexander J. and Kim, Jinsol and Fitzmaurice, Helen et al. (2020) Observed impacts of COVID-19 on urban CO₂ emissions. Geophysical Research Letters, 47 (22). Art. No. e2020GL090037. ISSN 0094-8276. https://resolver.caltech.edu/CaltechAUTHORS:20201026-102351517

U

Ullah, Irfan and Prévost, Jérémie and Ladinsky, Mark S. et al. (2021) Live imaging of SARS-CoV-2 infection in mice reveals that neutralizing antibodies require Fc function for optimal efficacy. Immunity, 54 (9). pp. 2143-2158. ISSN 1074-7613. PMCID PMC8372518; PMC8010726. doi:10.1016/j.immuni.2021.08.015. https://resolver.caltech.edu/CaltechAUTHORS:20210323-080814224

V

Vanshylla, Kanika and Fan, Chengcheng and Wunsch, Marie et al. (2022) Discovery of ultrapotent broadly neutralizing antibodies from SARS-CoV-2 elite neutralizers. Cell Host and Microbe, 30 (1). pp. 69-82. ISSN 1931-3128. PMCID PMC8683262. doi:10.1016/j.chom.2021.12.010. https://resolver.caltech.edu/CaltechAUTHORS:20211220-495801000

Van Rooy, Paul and Tasnia, Afsara and Barletta, Barbara et al. (2021) Observations of Volatile Organic Compounds in the Los Angeles Basin during COVID-19. ACS Earth and Space Chemistry, 5 (11). pp. 3045-3055. ISSN 2472-3452. doi:10.1021/acsearthspacechem.1c00248. https://resolver.caltech.edu/CaltechAUTHORS:20211118-233559021

Van Bavel, Jay J. and Baicker, Katherine and Boggio, Paulo S. et al. (2020) Using social and behavioural science to support COVID-19 pandemic response. Nature Human Behaviour, 4 (5). pp. 460-471. ISSN 2397-3374. doi:10.1038/s41562-020-0884-z. https://resolver.caltech.edu/CaltechAUTHORS:20200504-130436917

W

Winnett, Alexander Viloria and Akana, Reid and Shelby, Natasha et al. (2023) Extreme differences in SARS-CoV-2 viral loads among respiratory specimen types during presumed pre-infectious and infectious periods. PNAS Nexus, 2 (3). Art. No. pgad033. ISSN 2752-6542. PMCID PMC10013338. doi:10.1093/pnasnexus/pgad033. https://resolver.caltech.edu/CaltechAUTHORS:20230323-759607000.4

Winnett, Alexander Viloria and Porter, Michael K. and Romano, Anna E. et al. (2022) Morning SARS-CoV-2 Testing Yields Better Detection of Infection Due to Higher Viral Loads in Saliva and Nasal Swabs upon Waking. Microbiology Spectrum, 10 (6). Art. No. e03873-22. ISSN 2165-0497. PMCID PMC9769854. doi:10.1128/spectrum.03873-22. https://resolver.caltech.edu/CaltechAUTHORS:20221110-430693700.10

Wang, Zichao and Nie, Weili and Qiao, Zhuoran et al. (2022) Retrieval-based Controllable Molecule Generation. . (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20221221-004642358

Winnett, Alexander Viloria and Akana, Reid and Shelby, Natasha et al. (2022) Extreme differences in SARS-CoV-2 viral loads among respiratory specimen types during presumed pre-infectious and infectious periods. . doi:10.1101/2022.07.13.22277113. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20220720-917402000

Winnett, Alexander Viloria and Akana, Reid and Shelby, Natasha et al. (2022) Why Daily SARS-CoV-2 Nasal Rapid Antigen Testing Poorly Detects Infected and Infectious Individuals. . doi:10.1101/2022.07.13.22277513. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20220720-917093000

Winnett, Alexander Viloria and Porter, Michael K. and Romano, Anna E. et al. (2022) Morning SARS-CoV-2 testing yields better detection of infection due to higher viral loads in saliva and nasal swabs upon waking. . doi:10.1101/2022.03.02.22271724. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20220307-188444000

Wang, Xin and Zhan, Zhongwen and Williams, Ethan F. et al. (2021) Ground vibrations recorded by fiber-optic cables reveal traffic response to COVID-19 lockdown measures in Pasadena, California. Communications Earth & Environment, 2 (1). Art. No. 160. ISSN 2662-4435. doi:10.1038/s43247-021-00234-3. https://resolver.caltech.edu/CaltechAUTHORS:20210812-141727237

West, Anthony P., Jr. and Wertheim, Joel O. and Wang, Jade C. et al. (2021) Detection and characterization of the SARS-CoV-2 lineage B.1.526 in New York. Nature Communications, 12 . Art. No. 4886. ISSN 2041-1723. PMCID PMC8352861; PMC8077570. doi:10.1038/s41467-021-25168-4. https://resolver.caltech.edu/CaltechAUTHORS:20210216-123229308

Wang, Liqiang and Chen, Xue and Zhang, Yibo et al. (2021) Switching to electric vehicles can lead to significant reductions of PM_(2.5) and NO₂ across China. One Earth, 4 (7). pp. 1037-1048. ISSN 2590-3322. doi:10.1016/j.oneear.2021.06.008. https://resolver.caltech.edu/CaltechAUTHORS:20210729-221138822

Wang, Zijun and Muecksch, Frauke and Schaefer-Babajew, Dennis et al. (2021) Naturally enhanced neutralizing breadth against SARS-CoV-2 one year after infection. Nature, 595 (7867). pp. 426-431. ISSN 0028-0836. PMCID PMC8277577. doi:10.1038/s41586-021-03696-9. https://resolver.caltech.edu/CaltechAUTHORS:20210510-104403619

Wang, Zijun and Schmidt, Fabian and Weisblum, Yiska et al. (2021) mRNA vaccine-elicited antibodies to SARS-CoV-2 and circulating variants. Nature, 592 (7855). pp. 616-622. ISSN 0028-0836. PMCID PMC7836122. doi:10.1038/s41586-021-03324-6. https://resolver.caltech.edu/CaltechAUTHORS:20210120-121820490

Weissgerber, Tracey and Riedel, Nico and Kilicoglu, Halil et al. (2021) Automated screening of COVID-19 preprints: can we help authors to improve transparency and reproducibility? Nature Medicine, 27 (1). pp. 6-7. ISSN 1078-8956. doi:10.1038/s41591-020-01203-7. https://resolver.caltech.edu/CaltechAUTHORS:20210119-072728244

Winnett, Alexander and Cooper, Matthew M. and Shelby, Natasha et al. (2020) SARS-CoV-2 Viral Load in Saliva Rises Gradually and to Moderate Levels in Some Humans. . doi:10.1101/2020.12.09.20239467. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20201211-113537700

Wise, Toby and Zbozinek, Tomislav D. and Michelini, Giorgia et al. (2020) Changes in risk perception and self-reported protective behaviour during the first week of the COVID-19 pandemic in the United States. Royal Society Open Science, 7 (9). Art. No. 200742. ISSN 2054-5703. PMCID PMC7540790. doi:10.1098/rsos.200742. https://resolver.caltech.edu/CaltechAUTHORS:20200918-083207183

Wang, Liqiang and Li, Mengying and Yu, Shaocai et al. (2020) Unexpected rise of ozone in urban and rural areas, and sulfur dioxide in rural areas during the coronavirus city lockdown in Hangzhou, China: implications for air quality. Environmental Chemistry Letters, 18 (5). pp. 1713-1723. ISSN 1610-3653. PMCID PMC7292245. doi:10.1007/s10311-020-01028-3. https://resolver.caltech.edu/CaltechAUTHORS:20200615-082327667

Weatherbee, Bailey A. T. and Glover, David M. and Zernicka-Goetz, Magdalena (2020) Expression of SARS-CoV-2 receptor ACE2 and the protease TMPRSS2 suggests susceptibility of the human embryo in the first trimester. Open Biology, 10 (8). Art. No. 200162. ISSN 2046-2441. PMCID PMC7479935. doi:10.1098/rsob.200162. https://resolver.caltech.edu/CaltechAUTHORS:20200805-090719433

X

Xu, Rong and Lu, Renfei and Zhang, Tao et al. (2020) Temporal dynamics of human respiratory and gut microbiomes during the course of COVID-19 in adults. . doi:10.1101/2020.07.21.20158758. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20201119-135010266

Y

Yang, Jiani and Wen, Yifan and Wang, Yuan et al. (2021) From COVID-19 to future electrification: Assessing traffic impacts on air quality by a machine-learning model. Proceedings of the National Academy of Sciences, 118 (26). Art. No. e2102705118. ISSN 0027-8424. PMCID PMC8256029. doi:10.1073/pnas.2102705118. https://resolver.caltech.edu/CaltechAUTHORS:20210623-180037244

Yan, Liming and Yang, Yunxiang and Li, Mingyu et al. (2021) Coupling of N7-methyltransferase and 3′-5′ exoribonuclease with SARS-CoV-2 polymerase reveals mechanisms for capping and proofreading. Cell, 184 (13). pp. 3474-3485. ISSN 0092-8674. PMCID PMC8142856. doi:10.1016/j.cell.2021.05.033. https://resolver.caltech.edu/CaltechAUTHORS:20210701-155032256

Yurk, Dominic and Abu-Mostafa, Yaser (2021) County-Specific, Real-Time Projection of the Effect of Business Closures on the COVID-19 Pandemic. . doi:10.1101/2021.02.10.21251533. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20210212-100829452

Yun, Kyongsik and Lee, Jeong Seok and Kim, Eun Young et al. (2020) Severe COVID-19 Illness: Risk Factors and Its Burden on Critical Care Resources. Frontiers in Medicine, 7 . Art. No. 583060. ISSN 2296-858X. PMCID PMC7711126. doi:10.3389/fmed.2020.583060. https://resolver.caltech.edu/CaltechAUTHORS:20201221-133546033

Z

Zvyagin, Maxim and Brace, Alexander and Hippe, Kyle et al. (2022) GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics. . doi:10.1101/2022.10.10.511571. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20230322-101633000.20

Zhu, Yanzhe and Wu, Xunyi and Gu, Alan Y. et al. (2022) Membrane-Based In-Gel Loop-Mediated Isothermal Amplification (mgLAMP) System for SARS-CoV-2 Quantification in Environmental Waters. Environmental Science and Technology, 56 (2). pp. 862-873. ISSN 0013-936X. PMCID PMC8751019. doi:10.1021/acs.est.1c04623. https://resolver.caltech.edu/CaltechAUTHORS:20220103-231324400

Zhou, Lian and Yao, Maosheng and Zhang, Xiang et al. (2021) Breath-, air- and surface-borne SARS-CoV-2 in hospitals. Journal of Aerosol Science, 152 . Art. No. 105693. ISSN 0021-8502. PMCID PMC7557302. https://resolver.caltech.edu/CaltechAUTHORS:20201027-093242333

Zhang, Renyi and Li, Yixin and Zhang, Annie L. et al. (2020) Identifying airborne transmission as the dominant route for the spread of COVID-19. Proceedings of the National Academy of Sciences of the United States of America, 117 (26). pp. 14857-14863. ISSN 0027-8424. PMCID PMC7334447. doi:10.1073/pnas.2009637117. https://resolver.caltech.edu/CaltechAUTHORS:20200612-143721963