Items where Research Group Name is "Caltech Center for Environmental Microbial Interactions (CEMI)"

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Abrams, Michael J. and Tan, Fayth Hui and Li, Yutian et al. (2021) A conserved strategy for inducing appendage regeneration in moon jellyfish, Drosophila, and mice. eLife, 10 . Art. No. e65092. ISSN 2050-084X. PMCID PMC8782573. doi:10.7554/eLife.65092. https://resolver.caltech.edu/CaltechAUTHORS:20201123-131615362

Arnett, Charles H. and Chalkley, Matthew J. and Agapie, Theodor (2018) A Thermodynamic Model for Redox-Dependent Binding of Carbon Monoxide at Site-Differentiated, High Spin Iron Clusters. Journal of the American Chemical Society, 140 (16). pp. 5569-5578. ISSN 0002-7863. PMCID PMC6452638. doi:10.1021/jacs.8b01825. https://resolver.caltech.edu/CaltechAUTHORS:20180329-110229274

Anderson, John S. and Cutsail, George E., III and Rittle, Jonathan et al. (2015) Characterization of an Fe≡N−NH₂ Intermediate Relevant to Catalytic N₂ Reduction to NH₃. Journal of the American Chemical Society, 137 (24). pp. 7803-7809. ISSN 0002-7863. PMCID PMC4603982. doi:10.1021/jacs.5b03432. https://resolver.caltech.edu/CaltechAUTHORS:20150708-084228936

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Brückner, Adrian and Barnett, Austen A. and Bhat, Prashant et al. (2022) Molecular evolutionary trends and biosynthesis pathways in the Oribatida revealed by the genome of Archegozetes longisetosus. Acarologia, 62 (2). pp. 532-573. ISSN 0044-586X. doi:10.24349/pjye-gkeo. https://resolver.caltech.edu/CaltechAUTHORS:20201214-074948609

Brückner, Adrian and Kaltenpoth, Martin and Heethoff, Michael (2020) De novo biosynthesis of simple aromatic compounds by an arthropod (Archegozetes longisetosus). Proceedings of the Royal Society of London. Series B, Biological Sciences, 287 (1934). Art. No. 20201429. ISSN 0962-8452. PMCID PMC7542773. doi:10.1098/rspb.2020.1429. https://resolver.caltech.edu/CaltechAUTHORS:20200908-154844861

Brandenberg, Oliver F. and Prier, Christopher K. and Chen, Kai et al. (2018) Stereoselective Enzymatic Synthesis of Heteroatom-Substituted Cyclopropanes. ACS Catalysis, 8 (4). pp. 2629-2634. ISSN 2155-5435. doi:10.1021/acscatal.7b04423. https://resolver.caltech.edu/CaltechAUTHORS:20180312-085606768

Bedbrook, Claire N. and Rice, Austin J. and Yang, Kevin K. et al. (2017) Structure-guided SCHEMA recombination generates diverse chimeric channelrhodopsins. Proceedings of the National Academy of Sciences of the United States of America, 114 (13). E2624-E2633. ISSN 0027-8424. PMCID PMC5380088. doi:10.1073/pnas.1700269114. https://resolver.caltech.edu/CaltechAUTHORS:20170310-130542741

Booth, Ian R. and Miller, Samantha and Müller, Axel et al. (2015) The evolution of bacterial mechanosensitive channels. Cell Calcium, 57 (3). pp. 140-150. ISSN 0143-4160. doi:10.1016/j.ceca.2014.12.011. https://resolver.caltech.edu/CaltechAUTHORS:20150121-095159810

Booth, Ian R. (2014) Bacterial mechanosensitive channels: progress towards an understanding of their roles in cell physiology. Current Opinion in Microbiology, 18 . pp. 16-22. ISSN 1369-5274. PMCID PMC4005912. doi:10.1016/j.mib.2014.01.005. https://resolver.caltech.edu/CaltechAUTHORS:20140403-100546813

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Challis, Collin and Hori, Acacia and Sampson, Timothy R. et al. (2020) Gut-seeded α-synuclein fibrils promote gut dysfunction and brain pathology specifically in aged mice. Nature Neuroscience, 23 (3). pp. 327-336. ISSN 1097-6256. PMCID PMC7065967. doi:10.1038/s41593-020-0589-7. https://resolver.caltech.edu/CaltechAUTHORS:20191209-154036633

Chalkley, Matthew J. and Oyala, Paul H. and Peters, Jonas C. (2019) Cp* Noninnocence Leads to a Remarkably Weak C–H Bond via Metallocene Protonation. Journal of the American Chemical Society, 141 (11). pp. 4721-4729. ISSN 0002-7863. doi:10.1021/jacs.9b00193. https://resolver.caltech.edu/CaltechAUTHORS:20190221-125557747

Chalkley, Matthew J. and Del Castillo, Trevor J. and Matson, Benjamin D. et al. (2018) Fe-Mediated Nitrogen Fixation with a Metallocene Mediator: Exploring pK_a Effects and Demonstrating Electrocatalysis. Journal of the American Chemical Society, 140 (19). pp. 6122-6129. ISSN 0002-7863. PMCID PMC6071328. doi:10.1021/jacs.8b02335. https://resolver.caltech.edu/CaltechAUTHORS:20180418-164723702

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Dutka, Przemysław and Metskas, Lauren Ann and Hurt, Robert C. et al. (2022) Structure of Anabaena flos-aquae gas vesicles revealed by cryo-ET. . doi:10.1101/2022.06.21.496981. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20220706-965078000

Douglas, Madison M. and Li, Gen K. and Fischer, Woodward W. et al. (2022) Organic carbon burial by river meandering partially offsets bank erosion carbon fluxes in a discontinuous permafrost floodplain. Earth Surface Dynamics, 10 (3). pp. 421-435. ISSN 2196-632X. doi:10.5194/esurf-10-421-2022. https://resolver.caltech.edu/CaltechAUTHORS:20220520-231800000

Douglas, Madison M. and Lingappa, Usha F. and Lamb, Michael P. et al. (2021) Impact of River Channel Lateral Migration on Microbial Communities across a Discontinuous Permafrost Floodplain. Applied and Environmental Microbiology, 87 (20). Art. No. e01339-21. ISSN 0099-2240. PMCID PMC8478453. doi:10.1128/aem.01339-21. https://resolver.caltech.edu/CaltechAUTHORS:20210831-221808372

Dutka, Przemysław and Malounda, Dina and Metskas, Lauren Ann et al. (2021) Measuring gas vesicle dimensions by electron microscopy. Protein Science, 30 (5). pp. 1081-1086. ISSN 0961-8368. PMCID PMC8040859. doi:10.1002/pro.4056. https://resolver.caltech.edu/CaltechAUTHORS:20210125-082358436

Dahlstrom, Kurt M. and Newman, Dianne K. (2021) Paraburkholderia edwinii protects Aspergillus sp. from phenazines by acting as a toxin sponge. . doi:10.1101/2021.03.28.437412. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20210419-152102811

Donaldson, Gregory P. and Chou, Wen-Chi and Manson, Abigail L. et al. (2020) Spatially distinct physiology of Bacteroides fragilis within the proximal colon of gnotobiotic mice. Nature Microbiology, 5 (5). pp. 746-756. ISSN 2058-5276. doi:10.1038/s41564-020-0683-3. https://resolver.caltech.edu/CaltechAUTHORS:20200115-104219274

Davis, Hunter C. and Kang, Sunghwi and Lee, Jae-Hyun et al. (2020) Nanoscale Heat Transfer from Magnetic Nanoparticles and Ferritin in an Alternating Magnetic Field. Biophysical Journal, 118 (6). pp. 1502-1510. ISSN 0006-3495. PMCID PMC7091488 . doi:10.1016/j.bpj.2020.01.028. https://resolver.caltech.edu/CaltechAUTHORS:20200203-092720672

Davis, Hunter C. and Ramesh, Pradeep and Bhatnagar, Aadyot et al. (2018) Mapping the microscale origins of magnetic resonance image contrast with subcellular diamond magnetometry. Nature Communications, 9 . Art. No. 131. ISSN 2041-1723. PMCID PMC5760582. doi:10.1038/s41467-017-02471-7. https://resolver.caltech.edu/CaltechAUTHORS:20161205-095517669

DePas, William H. and Starwalt-Lee, Ruth and Van Sambeek, Lindsey et al. (2016) Exposing the Three-Dimensional Biogeography and Metabolic States of Pathogens in Cystic Fibrosis Sputum via Hydrogel Embedding, Clearing, and rRNA Labeling. mBio, 7 (5). e00796-16. ISSN 2150-7511. PMCID PMC5040109. doi:10.1128/mBio.00796-16. https://resolver.caltech.edu/CaltechAUTHORS:20160927-144217261

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Fischer, Woodward W. and Hemp, James and Johnson, Jena E. (2016) Evolution of Oxygenic Photosynthesis. Annual Review of Earth and Planetary Sciences, 44 . pp. 647-683. ISSN 0084-6597. doi:10.1146/annurev-earth-060313-054810. https://resolver.caltech.edu/CaltechAUTHORS:20160531-083106180

Fischer, Woodward W. and Hemp, James and Johnson, Jena E. (2015) Manganese and the Evolution of Photosynthesis. Origins of Life and Evolution of Biospheres, 45 (3). pp. 351-357. ISSN 0169-6149. doi:10.1007/s11084-015-9442-5. https://resolver.caltech.edu/CaltechAUTHORS:20150602-140446953

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Greenwald, Noah F. and Miller, Geneva and Moen, Erick et al. (2022) Whole-cell segmentation of tissue images with human-level performance using large-scale data annotation and deep learning. Nature Biotechnology, 40 (4). pp. 555-565. ISSN 1087-0156. PMCID PMC9010346. doi:10.1038/s41587-021-01094-0. https://resolver.caltech.edu/CaltechAUTHORS:20210303-070232817

Glenn, Weslee S. and Stone, Shannon E. and Ho, Samuel H. et al. (2017) BONCAT enables time-resolved analysis of protein synthesis in native plant tissue. Plant Physiology, 173 (3). pp. 1543-1553. ISSN 0032-0889. doi:10.1104/pp.16.01762. https://resolver.caltech.edu/CaltechAUTHORS:20170123-111643957

Grodick, Michael A. and Muren, Natalie B. and Barton, Jacqueline K. (2015) DNA Charge Transport within the Cell. Biochemistry, 54 (4). pp. 962-973. ISSN 0006-2960. PMCID PMC4587570. doi:10.1021/bi501520w. https://resolver.caltech.edu/CaltechAUTHORS:20150202-150621170

Grodick, Michael A. and Segal, Helen M. and Zwang, Theodore J. et al. (2014) DNA-Mediated Signaling by Proteins with 4Fe−4S Clusters Is Necessary for Genomic Integrity. Journal of the American Chemical Society, 136 (17). pp. 6470-6478. ISSN 0002-7863. PMCID PMC4017601. doi:10.1021/ja501973c. https://resolver.caltech.edu/CaltechAUTHORS:20140422-093606577

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Hurt, Robert C. and Buss, Marjorie T. and Duan, Mengtong et al. (2023) Genomically mined acoustic reporter genes for real-time in vivo monitoring of tumors and tumor-homing bacteria. Nature Biotechnology . ISSN 1087-0156. doi:10.1038/s41587-022-01581-y. (In Press) https://resolver.caltech.edu/CaltechAUTHORS:20230317-826078000.2

He, Xiaojia and Chadwick, Grayson and Jiménez Otero, Fernanda et al. (2021) Spatially Resolved Electron Transport through Anode-Respiring Geobacter sulfurreducens Biofilms: Controls and Constraints. ChemElectroChem, 8 (10). p. 1697. ISSN 2196-0216. doi:10.1002/celc.202100425. https://resolver.caltech.edu/CaltechAUTHORS:20210430-122719691

Hurt, Robert C. and Buss, Marjorie T. and Duan, Mengtong et al. (2021) Genomically Mined Acoustic Reporter Genes Enable In Vivo Monitoring of Tumors and Tumor-Homing Bacteria. . doi:10.1101/2021.04.26.441537. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20210429-092722876

Hirokawa, Soichi and Chure, Griffin and Belliveau, Nathan M. et al. (2020) Sequence-Dependent Dynamics of Synthetic and Endogenous RSSs in V(D)J Recombination. Nucleic Acids Research, 48 (12). pp. 6726-6739. ISSN 0305-1048. PMCID PMC7337519. doi:10.1093/nar/gkaa418. https://resolver.caltech.edu/CaltechAUTHORS:20191007-074542895

Hanewich-Hollatz, Mikhail H. and Chen, Zhewei and Hochrein, Lisa M. et al. (2019) Conditional Guide RNAs: Programmable Conditional Regulation of CRISPR/Cas Function in Bacterial and Mammalian Cells via Dynamic RNA Nanotechnology. ACS Central Science, 5 (7). pp. 1241-1249. ISSN 2374-7943. PMCID PMC6661866. doi:10.1021/acscentsci.9b00340. https://resolver.caltech.edu/CaltechAUTHORS:20190123-124341981

Herwig, Lukas and Rice, Austin J. and Bedbrook, Claire N. et al. (2017) Directed Evolution of a Bright Near-Infrared Fluorescent Rhodopsin Using a Synthetic Chromophore. Cell Chemical Biology, 24 (3). pp. 415-425. ISSN 2451-9456. PMCID PMC5357175. doi:10.1016/j.chembiol.2017.02.008. https://resolver.caltech.edu/CaltechAUTHORS:20170307-082231020

Ho, Samuel H. and Tirrell, David A. (2016) Chemoenzymatic Labeling of Proteins for Imaging in Bacterial Cells. Journal of the American Chemical Society, 138 (46). pp. 15098-15101. ISSN 0002-7863. doi:10.1021/jacs.6b07067. https://resolver.caltech.edu/CaltechAUTHORS:20161116-100355067

Hemp, James and Lücker, Sebastian and Schott, Joachim et al. (2016) Genomics of a phototrophic nitrite oxidizer: insights into the evolution of photosynthesis and nitrification. ISME Journal, 10 (11). pp. 2669-2678. ISSN 1751-7362. PMCID PMC5113846. doi:10.1038/ismej.2016.56. https://resolver.caltech.edu/CaltechAUTHORS:20160425-075949394

Hemp, James and Ward, Lewis M. and Pace, Laura A. et al. (2015) Draft Genome Sequence of Ardenticatena maritime 110S, a Thermophilic Nitrate- and Iron-Reducing Member of the Chloroflexi Class Ardenticatenia. Genome Announcements, 3 (6). Art. No. e01347-15. ISSN 2169-8287. PMCID PMC4653789. doi:10.1128/genomeA.01347-15. https://resolver.caltech.edu/CaltechAUTHORS:20151221-091145750

Hemp, James and Ward, Lewis M. and Pace, Laura A. et al. (2015) Draft Genome Sequence of Levilinea saccharolytica KIBI-1, a Member of the Chloroflexi Class Anaerolineae. Genome Announcements, 3 (6). Art. No. e01357-15. ISSN 2169-8287. PMCID PMC4653796. doi:10.1128/genomeA.01357-15. https://resolver.caltech.edu/CaltechAUTHORS:20151221-084436954

Hemp, James and Ward, Lewis M. and Pace, Laura A. et al. (2015) Draft Genome Sequence of Ornatilinea apprima P3M-1, an Anaerobic Member of the Chloroflexi Class Anaerolineae. Genome Announcements, 3 (6). Art. No. e01353-15. ISSN 2169-8287. PMCID PMC4653791. doi:10.1128/genomeA.01353-15. https://resolver.caltech.edu/CaltechAUTHORS:20151221-090203951

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Khazaei, Tahmineh and Williams, Rory L. and Bogatyrev, Said R. et al. (2020) Metabolic multistability and hysteresis in a model aerobe-anaerobe microbiome community. Science Advances, 6 (33). Art. No. eaba0353. ISSN 2375-2548. PMCID PMC7423363. doi:10.1126/sciadv.aba0353. https://resolver.caltech.edu/CaltechAUTHORS:20200813-144241318

Khazaei, Tahmineh and Williams, Rory L. and Bogatyrev, Said R. et al. (2020) Metabolic multi-stability and hysteresis in a model aerobe-anaerobe microbiome community. . doi:10.1101/2020.02.28.968941. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20200303-084602692

Knight, Anders M. and Kan, S. B. Jennifer and Lewis, Russell D. et al. (2018) Diverse engineered heme proteins enable stereodivergent cyclopropanation of unactivated alkenes. ACS Central Science, 4 (3). pp. 372-377. ISSN 2374-7943. PMCID PMC5879470. doi:10.1021/acscentsci.7b00548. https://resolver.caltech.edu/CaltechAUTHORS:20171220-092532762

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Ling, Bill and Lee, Justin and Maresca, David et al. (2020) Biomolecular Ultrasound Imaging of Phagolysosomal Function. ACS Nano, 14 (9). pp. 12210-12221. ISSN 1936-0851. PMCID PMC7685203. doi:10.1021/acsnano.0c05912. https://resolver.caltech.edu/CaltechAUTHORS:20200911-133137357

Lu, George J. and Farhadi, Arash and Mukherjee, Arnab et al. (2018) Proteins, air and water: reporter genes for ultrasound and magnetic resonance imaging. Current Opinion in Chemical Biology, 45 . pp. 57-63. ISSN 1367-5931. PMCID PMC6076850. doi:10.1016/j.cbpa.2018.02.011. https://resolver.caltech.edu/CaltechAUTHORS:20180322-135005180

Lewis, Russell D. and Garcia-Borràs, Marc and Chalkley, Matthew J. et al. (2018) Catalytic iron-carbene intermediate revealed in a cytochrome c carbene transferase. Proceedings of the National Academy of Sciences of the United States of America, 115 (28). pp. 7308-7313. ISSN 0027-8424. PMCID PMC6048479. doi:10.1073/pnas.1807027115. https://resolver.caltech.edu/CaltechAUTHORS:20180626-131945645

Lucey, Kaitlyn S. and Leadbetter, Jared R. (2014) Catechol 2,3-dioxygenase and other meta-cleavage catabolic pathway genes in the “anaerobic” termite gut spirochete Treponema primitia. Molecular Ecology, 23 (6). pp. 1531-1543. ISSN 0962-1083. doi:10.1111/mec.12598. https://resolver.caltech.edu/CaltechAUTHORS:20131204-090224188

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Magkiriadou, S. and Habel, A. and Stepp, W. L. et al. (2021) Polyphosphate affects cytoplasmic and chromosomal dynamics in nitrogen-starved Pseudomonas aeruginosa. . doi:10.1101/2021.12.23.473106. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20220104-461622500

Mondragón-Palomino, Octavio and Poceviciute, Roberta and Lignell, Antti et al. (2021) 3D imaging for the quantification of spatial patterns in microbiota of the intestinal mucosa. . doi:10.1101/2021.10.07.463215. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20211015-222210959

Morrison, Muir and Razo-Mejia, Manuel and Phillips, Rob (2021) Reconciling kinetic and thermodynamic models of bacterial transcription. PLOS Computational Biology, 17 (1). Art. No. e1008572. ISSN 1553-7358. PMCID PMC7845990. doi:10.1371/journal.pcbi.1008572. https://resolver.caltech.edu/CaltechAUTHORS:20200615-130249775

Moen, Erick and Borba, Enrico and Miller, Geneva et al. (2019) Accurate cell tracking and lineage construction in live-cell imaging experiments with deep learning. . doi:10.1101/803205. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20191014-100546775

Michel, Alice J. and Ward, Lewis M. and Goffredi, Shana K. et al. (2018) The gut of the finch: uniqueness of the gut microbiome of the Galápagos vampire finch. Microbiome, 6 . Art. No. 167. ISSN 2049-2618. PMCID PMC6146768. doi:10.1186/s40168-018-0555-8. https://resolver.caltech.edu/CaltechAUTHORS:20180919-102939169

Maresca, David and Lakshmanan, Anupama and Abedi, Mohamad H. et al. (2018) Biomolecular Ultrasound and Sonogenetics. Annual Review of Chemical and Biomolecular Engineering, 9 . pp. 229-252. ISSN 1947-5438. PMCID PMC6086606. doi:10.1146/annurev-chembioeng-060817-084034. https://resolver.caltech.edu/CaltechAUTHORS:20180330-152125173

Maker, Allison and Hemp, James and Pace, Laura A. et al. (2017) Draft Genome Sequence of Hydrogenibacillus schlegelii MA48, a Deep-Branching Member of the Bacilli Class of Firmicutes. Genome Announcements, 5 (3). Art. No. e00380-16. ISSN 2169-8287. PMCID PMC5255923. doi:10.1128/genomeA.00380-16. https://resolver.caltech.edu/CaltechAUTHORS:20170130-083631885

Marshall, Stephen S. and Niesen, Michiel J. M. and Müller, Axel et al. (2016) A Link between Integral Membrane Protein Expression and Simulated Integration Efficiency. Cell Reports, 16 (8). pp. 2169-2177. ISSN 2211-1247. PMCID PMC5001948. doi:10.1016/j.celrep.2016.07.042. https://resolver.caltech.edu/CaltechAUTHORS:20160816-075308782

Matson, Eric G. and Rosenthal, Adam Z. and Zhang, Xinning et al. (2013) Genome-Wide Effects of Selenium and Translational Uncoupling on Transcription in the Termite Gut Symbiont Treponema primitia. mBio, 4 (6). Art. No. e00869-13. ISSN 2150-7511. PMCID PMC3892789. doi:10.1128/mBio.00869-13. https://resolver.caltech.edu/CaltechAUTHORS:20140123-094750237

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Needham, Brittany D. and Funabashi, Masanori and Adame, Mark D. et al. (2022) A gut-derived metabolite alters brain activity and anxiety behaviour in mice. Nature, 602 (7899). pp. 647-653. ISSN 0028-0836. PMCID PMC9170029. doi:10.1038/s41586-022-04396-8. https://resolver.caltech.edu/CaltechAUTHORS:20220214-859281700

Nicolas, William J. and Ghosal, Debnath and Tocheva, Elitza I. et al. (2021) Structure of the Bacterial Cellulose Ribbon and Its Assembly-Guiding Cytoskeleton by Electron Cryotomography. Journal of Bacteriology, 203 (3). Art. No. e00371-20. ISSN 0021-9193. PMCID PMC7811197. doi:10.1128/JB.00371-20. https://resolver.caltech.edu/CaltechAUTHORS:20200417-145045074

Neubauer, Cajetan and Sessions, Alex L. and Booth, Ian R. et al. (2018) Towards measuring growth rates of pathogens during infections by D_2O-labeling lipidomics. Rapid Communications in Mass Spectrometry, 32 (24). pp. 2129-2140. ISSN 0951-4198. doi:10.1002/rcm.8288. https://resolver.caltech.edu/CaltechAUTHORS:20181003-105017642

Niesen, Michiel J. M. and Marshall, Stephen S. and Miller, Thomas F., III et al. (2017) Improving membrane protein expression by optimizing integration efficiency. Journal of Biological Chemistry, 292 (47). pp. 19537-19545. ISSN 0021-9258. PMCID PMC5702688. doi:10.1074/jbc.M117.813469. https://resolver.caltech.edu/CaltechAUTHORS:20170925-084831113

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Osorio‐Rodriguez, Daniela and Razo-Mejia, Manuel and Dalleska, Nathan F. et al. (2021) Sulfur isotope fractionations constrain the biological cycling of dimethylsulfoniopropionate in the upper ocean. Limnology and Oceanography, 66 (10). pp. 3607-3618. ISSN 0024-3590. doi:10.1002/lno.11901. https://resolver.caltech.edu/CaltechAUTHORS:20210817-204334443

Oikonomou, Catherine M. and Jensen, Grant J. (2017) Cellular Electron Cryotomography: Toward Structural Biology In Situ. Annual Review of Biochemistry, 86 . pp. 873-896. ISSN 0066-4154. doi:10.1146/annurev-biochem-061516-044741. https://resolver.caltech.edu/CaltechAUTHORS:20170421-082204689

Oikonomou, Catherine M. and Jensen, Grant J. (2016) A new view into prokaryotic cell biology from electron cryotomography. Nature Reviews Microbiology, 14 (4). pp. 205-220. ISSN 1740-1526. PMCID PMC5551487. doi:10.1038/nrmicro.2016.7. https://resolver.caltech.edu/CaltechAUTHORS:20160307-090319472

Olovnikov, Ivan and Le Thomas, Adrien and Aravin, Alexei A. (2014) A Framework for piRNA Cluster Manipulation. In: PIWI-Interacting RNAs: Methods and Protocols. Methods in Molecular Biology. No.1093. Humana Press , New York, NY, pp. 47-58. ISBN 978-1-62703-693-1. https://resolver.caltech.edu/CaltechAUTHORS:20131112-093205322

Olovnikov, Ivan and Chan, Ken and Sachidanandam, Ravi et al. (2013) Bacterial Argonaute Samples the Transcriptome to Identify Foreign DNA. Molecular Cell, 51 (5). pp. 594-605. ISSN 1097-2765. PMCID PMC3809076. doi:10.1016/j.molcel.2013.08.014. https://resolver.caltech.edu/CaltechAUTHORS:20140220-100231898

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Perry, Elena K. and Siozios, Stefanos and Hurst, Gregory D. D. et al. (2021) Structure of an ant-myrmecophile-microbe community. . doi:10.1101/2021.10.04.462948. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20211008-224629828

Porter, Michael K. and Steinberg, Asher Preska and Ismagilov, Rustem F. (2019) Interplay of motility and polymer-driven depletion forces in the initial stages of bacterial aggregation. Soft Matter, 15 (35). pp. 7071-7079. ISSN 1744-683X. doi:10.1039/c9sm00791a. https://resolver.caltech.edu/CaltechAUTHORS:20190823-085722494

Preska Steinberg, Asher and Wang, Zhen-Gang and Ismagilov, Rustem F. (2019) Food Polyelectrolytes Compress the Colonic Mucus Hydrogel by a Donnan Mechanism. Biomacromolecules, 20 (7). pp. 2675-2683. ISSN 1525-7797. doi:10.1021/acs.biomac.9b00442. https://resolver.caltech.edu/CaltechAUTHORS:20190619-091518942

Piraner, Dan I. and Farhadi, Arash and Davis, Hunter C. et al. (2017) Going Deeper: Biomolecular Tools for Acoustic and Magnetic Imaging and Control of Cellular Function. Biochemistry, 56 (39). pp. 5202-5209. ISSN 0006-2960. PMCID PMC6058970. doi:10.1021/acs.biochem.7b00443. https://resolver.caltech.edu/CaltechAUTHORS:20170814-132937862

Pace, Laura A. and Hemp, James and Ward, Lewis M. et al. (2015) Draft Genome of Thermanaerothrix daxensis GNS-1, a Thermophilic Facultative Anaerobe from the Chloroflexi Class Anaerolineae. Genome Announcements, 3 (6). Art. No. e01354-15. ISSN 2169-8287. PMCID PMC4653792. doi:10.1128/genomeA.01354-15. https://resolver.caltech.edu/CaltechAUTHORS:20151221-085728522

Pilhofer, Martin and Aistleitner, Karin and Ladinsky, Mark S. et al. (2014) Architecture and host interface of environmental chlamydiae revealed by electron cryotomography. Environmental Microbiology, 16 (2). pp. 417-429. ISSN 1462-2912. PMCID PMC4949044. doi:10.1111/1462-2920.12299. https://resolver.caltech.edu/CaltechAUTHORS:20140318-101020463

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