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Items where Research Group Name is "Caltech Center for Environmental Microbial Interactions (CEMI)"
Number of items: 105. 2023Wang, Grace Z. and Warren, Elizabeth A. and Haas, Allison L. et al. (2023) Staphylococcal secreted cytotoxins are competition sensing signals for Pseudomonas aeruginosa. . doi:10.1101/2023.01.29.526047. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20230316-182348000.27 Hurt, Robert C. and Buss, Marjorie T. and Duan, Mengtong et al. (2023) Genomically mined acoustic reporter genes for real-time in vivo monitoring of tumors and tumor-homing bacteria. Nature Biotechnology . ISSN 1087-0156. doi:10.1038/s41587-022-01581-y. (In Press) https://resolver.caltech.edu/CaltechAUTHORS:20230317-826078000.2 2022Wilkes, Elise B. and Sessions, Alex L. and Zeichner, Sarah S. et al. (2022) Position-specific carbon isotope analysis of serine by gas chromatography/Orbitrap mass spectrometry, and an application to plant metabolism. Rapid Communications in Mass Spectrometry, 36 (18). Art. No. e9347. ISSN 0951-4198. doi:10.1002/rcm.9347. https://resolver.caltech.edu/CaltechAUTHORS:20220708-948968900 Zeichner, Sarah S. and Wilkes, Elise B. and Hofmann, Amy E. et al. (2022) Methods and limitations of stable isotope measurements via direct elution of chromatographic peaks using gas chromotography-Orbitrap mass spectrometry. International Journal of Mass Spectrometry, 477 . Art. No. 116848. ISSN 1387-3806. doi:10.1016/j.ijms.2022.116848. https://resolver.caltech.edu/CaltechAUTHORS:20220513-557936000 Dutka, Przemysław and Metskas, Lauren Ann and Hurt, Robert C. et al. (2022) Structure of Anabaena flos-aquae gas vesicles revealed by cryo-ET. . doi:10.1101/2022.06.21.496981. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20220706-965078000 Brückner, Adrian and Barnett, Austen A. and Bhat, Prashant et al. (2022) Molecular evolutionary trends and biosynthesis pathways in the Oribatida revealed by the genome of Archegozetes longisetosus. Acarologia, 62 (2). pp. 532-573. ISSN 0044-586X. doi:10.24349/pjye-gkeo. https://resolver.caltech.edu/CaltechAUTHORS:20201214-074948609 Douglas, Madison M. and Li, Gen K. and Fischer, Woodward W. et al. (2022) Organic carbon burial by river meandering partially offsets bank erosion carbon fluxes in a discontinuous permafrost floodplain. Earth Surface Dynamics, 10 (3). pp. 421-435. ISSN 2196-632X. doi:10.5194/esurf-10-421-2022. https://resolver.caltech.edu/CaltechAUTHORS:20220520-231800000 Greenwald, Noah F. and Miller, Geneva and Moen, Erick et al. (2022) Whole-cell segmentation of tissue images with human-level performance using large-scale data annotation and deep learning. Nature Biotechnology, 40 (4). pp. 555-565. ISSN 1087-0156. PMCID PMC9010346. doi:10.1038/s41587-021-01094-0. https://resolver.caltech.edu/CaltechAUTHORS:20210303-070232817 Yu, Hang and Chadwick, Grayson L. and Lingappa, Usha F. et al. (2022) Comparative Genomics on Cultivated and Uncultivated Freshwater and Marine “Candidatus Manganitrophaceae” Species Implies Their Worldwide Reach in Manganese Chemolithoautotrophy. mBio, 13 (2). Art. No. 03421-21. ISSN 2161-2129. PMCID PMC9040806. doi:10.1128/mbio.03421-21. https://resolver.caltech.edu/CaltechAUTHORS:20211118-163619344 Needham, Brittany D. and Funabashi, Masanori and Adame, Mark D. et al. (2022) A gut-derived metabolite alters brain activity and anxiety behaviour in mice. Nature, 602 (7899). pp. 647-653. ISSN 0028-0836. PMCID PMC9170029. doi:10.1038/s41586-022-04396-8. https://resolver.caltech.edu/CaltechAUTHORS:20220214-859281700 Yu, Hang and Skennerton, Connor T. and Chadwick, Grayson L. et al. (2022) Sulfate differentially stimulates but is not respired by diverse anaerobic methanotrophic archaea. ISME Journal, 16 (1). pp. 168-177. ISSN 1751-7362. doi:10.1038/s41396-021-01047-0. https://resolver.caltech.edu/CaltechAUTHORS:20210726-170837328 2021Magkiriadou, S. and Habel, A. and Stepp, W. L. et al. (2021) Polyphosphate affects cytoplasmic and chromosomal dynamics in nitrogen-starved Pseudomonas aeruginosa. . doi:10.1101/2021.12.23.473106. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20220104-461622500 Abrams, Michael J. and Tan, Fayth Hui and Li, Yutian et al. (2021) A conserved strategy for inducing appendage regeneration in moon jellyfish, Drosophila, and mice. eLife, 10 . Art. No. e65092. ISSN 2050-084X. PMCID PMC8782573. doi:10.7554/eLife.65092. https://resolver.caltech.edu/CaltechAUTHORS:20201123-131615362 Mondragón-Palomino, Octavio and Poceviciute, Roberta and Lignell, Antti et al. (2021) 3D imaging for the quantification of spatial patterns in microbiota of the intestinal mucosa. . doi:10.1101/2021.10.07.463215. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20211015-222210959 Perry, Elena K. and Siozios, Stefanos and Hurst, Gregory D. D. et al. (2021) Structure of an ant-myrmecophile-microbe community. . doi:10.1101/2021.10.04.462948. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20211008-224629828 Osorio‐Rodriguez, Daniela and Razo-Mejia, Manuel and Dalleska, Nathan F. et al. (2021) Sulfur isotope fractionations constrain the biological cycling of dimethylsulfoniopropionate in the upper ocean. Limnology and Oceanography, 66 (10). pp. 3607-3618. ISSN 0024-3590. doi:10.1002/lno.11901. https://resolver.caltech.edu/CaltechAUTHORS:20210817-204334443 Douglas, Madison M. and Lingappa, Usha F. and Lamb, Michael P. et al. (2021) Impact of River Channel Lateral Migration on Microbial Communities across a Discontinuous Permafrost Floodplain. Applied and Environmental Microbiology, 87 (20). Art. No. e01339-21. ISSN 0099-2240. PMCID PMC8478453. doi:10.1128/aem.01339-21. https://resolver.caltech.edu/CaltechAUTHORS:20210831-221808372 He, Xiaojia and Chadwick, Grayson and Jiménez Otero, Fernanda et al. (2021) Spatially Resolved Electron Transport through Anode-Respiring Geobacter sulfurreducens Biofilms: Controls and Constraints. ChemElectroChem, 8 (10). p. 1697. ISSN 2196-0216. doi:10.1002/celc.202100425. https://resolver.caltech.edu/CaltechAUTHORS:20210430-122719691 Dutka, Przemysław and Malounda, Dina and Metskas, Lauren Ann et al. (2021) Measuring gas vesicle dimensions by electron microscopy. Protein Science, 30 (5). pp. 1081-1086. ISSN 0961-8368. PMCID PMC8040859. doi:10.1002/pro.4056. https://resolver.caltech.edu/CaltechAUTHORS:20210125-082358436 Hurt, Robert C. and Buss, Marjorie T. and Duan, Mengtong et al. (2021) Genomically Mined Acoustic Reporter Genes Enable In Vivo Monitoring of Tumors and Tumor-Homing Bacteria. . doi:10.1101/2021.04.26.441537. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20210429-092722876 Yoo, Bryan B. and Griffiths, Jessica A and Thuy-Boun, Peter et al. (2021) Neuronal Activation of the Gastrointestinal Tract Shapes the Gut Environment in Mice. . doi:10.1101/2021.04.12.439539. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20210414-072514678 Dahlstrom, Kurt M. and Newman, Dianne K. (2021) Paraburkholderia edwinii protects Aspergillus sp. from phenazines by acting as a toxin sponge. . doi:10.1101/2021.03.28.437412. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20210419-152102811 Nicolas, William J. and Ghosal, Debnath and Tocheva, Elitza I. et al. (2021) Structure of the Bacterial Cellulose Ribbon and Its Assembly-Guiding Cytoskeleton by Electron Cryotomography. Journal of Bacteriology, 203 (3). Art. No. e00371-20. ISSN 0021-9193. PMCID PMC7811197. https://resolver.caltech.edu/CaltechAUTHORS:20200417-145045074 Morrison, Muir and Razo-Mejia, Manuel and Phillips, Rob (2021) Reconciling kinetic and thermodynamic models of bacterial transcription. PLOS Computational Biology, 17 (1). Art. No. e1008572. ISSN 1553-7358. PMCID PMC7845990. doi:10.1371/journal.pcbi.1008572. https://resolver.caltech.edu/CaltechAUTHORS:20200615-130249775 2020Ling, Bill and Lee, Justin and Maresca, David et al. (2020) Biomolecular Ultrasound Imaging of Phagolysosomal Function. ACS Nano, 14 (9). pp. 12210-12221. ISSN 1936-0851. PMCID PMC7685203. doi:10.1021/acsnano.0c05912. https://resolver.caltech.edu/CaltechAUTHORS:20200911-133137357 Brückner, Adrian and Kaltenpoth, Martin and Heethoff, Michael (2020) De novo biosynthesis of simple aromatic compounds by an arthropod (Archegozetes longisetosus). Proceedings of the Royal Society of London. Series B, Biological Sciences, 287 (1934). Art. No. 20201429. ISSN 0962-8452. PMCID PMC7542773. doi:10.1098/rspb.2020.1429. https://resolver.caltech.edu/CaltechAUTHORS:20200908-154844861 Saunders, Scott H. and Tse, Edmund C. M. and Yates, Matthew D. et al. (2020) Extracellular DNA Promotes Efficient Extracellular Electron Transfer by Pyocyanin in Pseudomonas aeruginosa Biofilms. Cell, 182 (4). pp. 919-932. ISSN 0092-8674. PMCID PMC7457544. https://resolver.caltech.edu/CaltechAUTHORS:20191213-144717393 Khazaei, Tahmineh and Williams, Rory L. and Bogatyrev, Said R. et al. (2020) Metabolic multistability and hysteresis in a model aerobe-anaerobe microbiome community. Science Advances, 6 (33). Art. No. eaba0353. ISSN 2375-2548. PMCID PMC7423363. doi:10.1126/sciadv.aba0353. https://resolver.caltech.edu/CaltechAUTHORS:20200813-144241318 Razo-Mejia, Manuel and Marzen, Sarah and Chure, Griffin et al. (2020) First-principles prediction of the information processing capacity of a simple genetic circuit. Physical Review E, 102 (2). Art. No. 022404. ISSN 2470-0045. https://resolver.caltech.edu/CaltechAUTHORS:20190402-080512452 Yu, Hang and Leadbetter, Jared R. (2020) Bacterial chemolithoautotrophy via manganese oxidation. Nature, 583 (7816). pp. 453-458. ISSN 0028-0836. PMCID PMC7802741. https://resolver.caltech.edu/CaltechAUTHORS:20200408-160710037 Hirokawa, Soichi and Chure, Griffin and Belliveau, Nathan M. et al. (2020) Sequence-Dependent Dynamics of Synthetic and Endogenous RSSs in V(D)J Recombination. Nucleic Acids Research, 48 (12). pp. 6726-6739. ISSN 0305-1048. PMCID PMC7337519. https://resolver.caltech.edu/CaltechAUTHORS:20191007-074542895 Silva, Rebekah M. B. and Grodick, Michael A. and Barton, Jacqueline K. (2020) UvrC Coordinates an O₂-Sensitive [4Fe4S] Cofactor. Journal of the American Chemical Society, 142 (25). pp. 10964-10977. ISSN 0002-7863. PMCID PMC7392197. doi:10.1021/jacs.0c01671. https://resolver.caltech.edu/CaltechAUTHORS:20200615-113627458 Donaldson, Gregory P. and Chou, Wen-Chi and Manson, Abigail L. et al. (2020) Spatially distinct physiology of Bacteroides fragilis within the proximal colon of gnotobiotic mice. Nature Microbiology, 5 (5). pp. 746-756. ISSN 2058-5276. doi:10.1038/s41564-020-0683-3. https://resolver.caltech.edu/CaltechAUTHORS:20200115-104219274 Ward, Lewis M. and Lingappa, Usha F. and Grotzinger, John P. et al. (2020) Microbial mats in the Turks and Caicos Islands reveal diversity and evolution of phototrophy in the Chloroflexota order Aggregatilineales. Environmental Microbiome, 15 . Art. No. 9. ISSN 2524-6372. PMCID PMC8067394. doi:10.1186/s40793-020-00357-8. https://resolver.caltech.edu/CaltechAUTHORS:20200416-123639965 Torres, Mark A. and Kemeny, Preston C. and Lamb, Michael P. et al. (2020) Long-term storage and age‐biased export of fluvial organic carbon: field evidence from West Iceland. Geochemistry, Geophysics, Geosystems, 21 (4). Art. No. e2019GC008632. ISSN 1525-2027. doi:10.1029/2019gc008632. https://resolver.caltech.edu/CaltechAUTHORS:20200317-150608382 Davis, Hunter C. and Kang, Sunghwi and Lee, Jae-Hyun et al. (2020) Nanoscale Heat Transfer from Magnetic Nanoparticles and Ferritin in an Alternating Magnetic Field. Biophysical Journal, 118 (6). pp. 1502-1510. ISSN 0006-3495. PMCID PMC7091488 . doi:10.1016/j.bpj.2020.01.028. https://resolver.caltech.edu/CaltechAUTHORS:20200203-092720672 Challis, Collin and Hori, Acacia and Sampson, Timothy R. et al. (2020) Gut-seeded α-synuclein fibrils promote gut dysfunction and brain pathology specifically in aged mice. Nature Neuroscience, 23 (3). pp. 327-336. ISSN 1097-6256. PMCID PMC7065967. doi:10.1038/s41593-020-0589-7. https://resolver.caltech.edu/CaltechAUTHORS:20191209-154036633 Khazaei, Tahmineh and Williams, Rory L. and Bogatyrev, Said R. et al. (2020) Metabolic multi-stability and hysteresis in a model aerobe-anaerobe microbiome community. . doi:10.1101/2020.02.28.968941. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20200303-084602692 2019Moen, Erick and Borba, Enrico and Miller, Geneva et al. (2019) Accurate cell tracking and lineage construction in live-cell imaging experiments with deep learning. . doi:10.1101/803205. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20191014-100546775 Porter, Michael K. and Steinberg, Asher Preska and Ismagilov, Rustem F. (2019) Interplay of motility and polymer-driven depletion forces in the initial stages of bacterial aggregation. Soft Matter, 15 (35). pp. 7071-7079. ISSN 1744-683X. doi:10.1039/c9sm00791a. https://resolver.caltech.edu/CaltechAUTHORS:20190823-085722494 Hanewich-Hollatz, Mikhail H. and Chen, Zhewei and Hochrein, Lisa M. et al. (2019) Conditional Guide RNAs: Programmable Conditional Regulation of CRISPR/Cas Function in Bacterial and Mammalian Cells via Dynamic RNA Nanotechnology. ACS Central Science, 5 (7). pp. 1241-1249. ISSN 2374-7943. PMCID PMC6661866. https://resolver.caltech.edu/CaltechAUTHORS:20190123-124341981 Preska Steinberg, Asher and Wang, Zhen-Gang and Ismagilov, Rustem F. (2019) Food Polyelectrolytes Compress the Colonic Mucus Hydrogel by a Donnan Mechanism. Biomacromolecules, 20 (7). pp. 2675-2683. ISSN 1525-7797. doi:10.1021/acs.biomac.9b00442. https://resolver.caltech.edu/CaltechAUTHORS:20190619-091518942 Chalkley, Matthew J. and Oyala, Paul H. and Peters, Jonas C. (2019) Cp* Noninnocence Leads to a Remarkably Weak C–H Bond via Metallocene Protonation. Journal of the American Chemical Society, 141 (11). pp. 4721-4729. ISSN 0002-7863. doi:10.1021/jacs.9b00193. https://resolver.caltech.edu/CaltechAUTHORS:20190221-125557747 Ward, Lewis M. and Shih, Patrick M. and Hemp, James et al. (2019) Phototrophic Methane Oxidation in a Member of the Chloroflexi Phylum. . doi:10.1101/531582. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20190130-121936798 Ward, Lewis M. and Shih, Patrick M. and Hemp, James et al. (2019) Genomic Evidence for Phototrophic Oxidation of Small Alkanes in a Member of the Chloroflexi Phylum. . doi:10.1101/531582. (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20190923-100935684 2018Neubauer, Cajetan and Sessions, Alex L. and Booth, Ian R. et al. (2018) Towards measuring growth rates of pathogens during infections by D_2O-labeling lipidomics. Rapid Communications in Mass Spectrometry, 32 (24). pp. 2129-2140. ISSN 0951-4198. doi:10.1002/rcm.8288. https://resolver.caltech.edu/CaltechAUTHORS:20181003-105017642 Schretter, Catherine E. and Vielmetter, Jost and Bartos, Imre et al. (2018) A gut microbial factor modulates locomotor behavior in Drosophila. Nature, 563 (7731). pp. 402-406. ISSN 0028-0836. PMCID PMC6237646. doi:10.1038/s41586-018-0634-9. https://resolver.caltech.edu/CaltechAUTHORS:20180905-135438422 Michel, Alice J. and Ward, Lewis M. and Goffredi, Shana K. et al. (2018) The gut of the finch: uniqueness of the gut microbiome of the Galápagos vampire finch. Microbiome, 6 . Art. No. 167. ISSN 2049-2618. PMCID PMC6146768. doi:10.1186/s40168-018-0555-8. https://resolver.caltech.edu/CaltechAUTHORS:20180919-102939169 Lu, George J. and Farhadi, Arash and Mukherjee, Arnab et al. (2018) Proteins, air and water: reporter genes for ultrasound and magnetic resonance imaging. Current Opinion in Chemical Biology, 45 . pp. 57-63. ISSN 1367-5931. PMCID PMC6076850. doi:10.1016/j.cbpa.2018.02.011. https://resolver.caltech.edu/CaltechAUTHORS:20180322-135005180 Lewis, Russell D. and Garcia-Borràs, Marc and Chalkley, Matthew J. et al. (2018) Catalytic iron-carbene intermediate revealed in a cytochrome c carbene transferase. Proceedings of the National Academy of Sciences of the United States of America, 115 (28). pp. 7308-7313. ISSN 0027-8424. PMCID PMC6048479. doi:10.1073/pnas.1807027115. https://resolver.caltech.edu/CaltechAUTHORS:20180626-131945645 Maresca, David and Lakshmanan, Anupama and Abedi, Mohamad H. et al. (2018) Biomolecular Ultrasound and Sonogenetics. Annual Review of Chemical and Biomolecular Engineering, 9 . pp. 229-252. ISSN 1947-5438. PMCID PMC6086606. doi:10.1146/annurev-chembioeng-060817-084034. https://resolver.caltech.edu/CaltechAUTHORS:20180330-152125173 Rosenthal, Adam Z. and Qi, Yutao and Hormoz, Sahand et al. (2018) Metabolic interactions between dynamic bacterial subpopulations. eLife, 7 . Art. No. e33099. ISSN 2050-084X. PMCID PMC6025961. https://resolver.caltech.edu/CaltechAUTHORS:20180604-074815229 Chalkley, Matthew J. and Del Castillo, Trevor J. and Matson, Benjamin D. et al. (2018) Fe-Mediated Nitrogen Fixation with a Metallocene Mediator: Exploring pK_a Effects and Demonstrating Electrocatalysis. Journal of the American Chemical Society, 140 (19). pp. 6122-6129. ISSN 0002-7863. PMCID PMC6071328. doi:10.1021/jacs.8b02335. https://resolver.caltech.edu/CaltechAUTHORS:20180418-164723702 Arnett, Charles H. and Chalkley, Matthew J. and Agapie, Theodor (2018) A Thermodynamic Model for Redox-Dependent Binding of Carbon Monoxide at Site-Differentiated, High Spin Iron Clusters. Journal of the American Chemical Society, 140 (16). pp. 5569-5578. ISSN 0002-7863. PMCID PMC6452638. doi:10.1021/jacs.8b01825. https://resolver.caltech.edu/CaltechAUTHORS:20180329-110229274 Brandenberg, Oliver F. and Prier, Christopher K. and Chen, Kai et al. (2018) Stereoselective Enzymatic Synthesis of Heteroatom-Substituted Cyclopropanes. ACS Catalysis, 8 (4). pp. 2629-2634. ISSN 2155-5435. doi:10.1021/acscatal.7b04423. https://resolver.caltech.edu/CaltechAUTHORS:20180312-085606768 Subramanian, Poorna and Pirbadian, Sahand and El-Naggar, Mohamed Y. et al. (2018) Ultrastructure of Shewanella oneidensis MR-1 nanowires revealed by electron cryotomography. Proceedings of the National Academy of Sciences of the United States of America, 115 (14). E3246-E3255. ISSN 0027-8424. PMCID PMC5889646. doi:10.1073/pnas.1718810115. https://resolver.caltech.edu/CaltechAUTHORS:20170619-134442390 Knight, Anders M. and Kan, S. B. Jennifer and Lewis, Russell D. et al. (2018) Diverse engineered heme proteins enable stereodivergent cyclopropanation of unactivated alkenes. ACS Central Science, 4 (3). pp. 372-377. ISSN 2374-7943. PMCID PMC5879470. doi:10.1021/acscentsci.7b00548. https://resolver.caltech.edu/CaltechAUTHORS:20171220-092532762 Ward, Lewis M. and Hemp, James and Shih, Patrick M. et al. (2018) Evolution of Phototrophy in the Chloroflexi Phylum Driven by Horizontal Gene Transfer. Frontiers in Microbiology, 9 . Art. No. 260. ISSN 1664-302X. PMCID PMC5826079. doi:10.3389/fmicb.2018.00260. https://resolver.caltech.edu/CaltechAUTHORS:20180307-130527925 Davis, Hunter C. and Ramesh, Pradeep and Bhatnagar, Aadyot et al. (2018) Mapping the microscale origins of magnetic resonance image contrast with subcellular diamond magnetometry. Nature Communications, 9 . Art. No. 131. ISSN 2041-1723. PMCID PMC5760582. doi:10.1038/s41467-017-02471-7. https://resolver.caltech.edu/CaltechAUTHORS:20161205-095517669 2017Niesen, Michiel J. M. and Marshall, Stephen S. and Miller, Thomas F., III et al. (2017) Improving membrane protein expression by optimizing integration efficiency. Journal of Biological Chemistry, 292 (47). pp. 19537-19545. ISSN 0021-9258. PMCID PMC5702688. doi:10.1074/jbc.M117.813469. https://resolver.caltech.edu/CaltechAUTHORS:20170925-084831113 Piraner, Dan I. and Farhadi, Arash and Davis, Hunter C. et al. (2017) Going Deeper: Biomolecular Tools for Acoustic and Magnetic Imaging and Control of Cellular Function. Biochemistry, 56 (39). pp. 5202-5209. ISSN 0006-2960. PMCID PMC6058970. doi:10.1021/acs.biochem.7b00443. https://resolver.caltech.edu/CaltechAUTHORS:20170814-132937862 Oikonomou, Catherine M. and Jensen, Grant J. (2017) Cellular Electron Cryotomography: Toward Structural Biology In Situ. Annual Review of Biochemistry, 86 . pp. 873-896. ISSN 0066-4154. doi:10.1146/annurev-biochem-061516-044741. https://resolver.caltech.edu/CaltechAUTHORS:20170421-082204689 Bedbrook, Claire N. and Rice, Austin J. and Yang, Kevin K. et al. (2017) Structure-guided SCHEMA recombination generates diverse chimeric channelrhodopsins. Proceedings of the National Academy of Sciences of the United States of America, 114 (13). E2624-E2633. ISSN 0027-8424. PMCID PMC5380088. doi:10.1073/pnas.1700269114. https://resolver.caltech.edu/CaltechAUTHORS:20170310-130542741 Herwig, Lukas and Rice, Austin J. and Bedbrook, Claire N. et al. (2017) Directed Evolution of a Bright Near-Infrared Fluorescent Rhodopsin Using a Synthetic Chromophore. Cell Chemical Biology, 24 (3). pp. 415-425. ISSN 2451-9456. PMCID PMC5357175. doi:10.1016/j.chembiol.2017.02.008. https://resolver.caltech.edu/CaltechAUTHORS:20170307-082231020 Rittle, Jonathan and Peters, Jonas C. (2017) N-H Bond Dissociation Enthalpies and Facile H-atom Transfers for Early Intermediates of Fe-N₂ and Fe-CN Reductions. Journal of the American Chemical Society, 139 (8). pp. 3161-3170. ISSN 0002-7863. PMCID PMC5517100. doi:10.1021/jacs.6b12861. https://resolver.caltech.edu/CaltechAUTHORS:20170201-092020177 Glenn, Weslee S. and Stone, Shannon E. and Ho, Samuel H. et al. (2017) BONCAT enables time-resolved analysis of protein synthesis in native plant tissue. Plant Physiology, 173 (3). pp. 1543-1553. ISSN 0032-0889. doi:10.1104/pp.16.01762. https://resolver.caltech.edu/CaltechAUTHORS:20170123-111643957 Stone, Shannon E. and Glenn, Weslee S. and Hamblin, Graham D. et al. (2017) Cell-selective proteomics for biological discovery. Current Opinion in Chemical Biology, 36 . pp. 50-57. ISSN 1367-5931. PMCID PMC5337159. doi:10.1016/j.cbpa.2016.12.026. https://resolver.caltech.edu/CaltechAUTHORS:20170117-150138453 Maker, Allison and Hemp, James and Pace, Laura A. et al. (2017) Draft Genome Sequence of Hydrogenibacillus schlegelii MA48, a Deep-Branching Member of the Bacilli Class of Firmicutes. Genome Announcements, 5 (3). Art. No. e00380-16. ISSN 2169-8287. PMCID PMC5255923. doi:10.1128/genomeA.00380-16. https://resolver.caltech.edu/CaltechAUTHORS:20170130-083631885 Shih, P. M. and Hemp, J. and Ward, L. M. et al. (2017) Crown group Oxyphotobacteria postdate the rise of oxygen. Geobiology, 15 (1). pp. 19-29. ISSN 1472-4677. doi:10.1111/gbi.12200. https://resolver.caltech.edu/CaltechAUTHORS:20160718-081438054 2016Ho, Samuel H. and Tirrell, David A. (2016) Chemoenzymatic Labeling of Proteins for Imaging in Bacterial Cells. Journal of the American Chemical Society, 138 (46). pp. 15098-15101. ISSN 0002-7863. doi:10.1021/jacs.6b07067. https://resolver.caltech.edu/CaltechAUTHORS:20161116-100355067 Hemp, James and Lücker, Sebastian and Schott, Joachim et al. (2016) Genomics of a phototrophic nitrite oxidizer: insights into the evolution of photosynthesis and nitrification. ISME Journal, 10 (11). pp. 2669-2678. ISSN 1751-7362. PMCID PMC5113846. doi:10.1038/ismej.2016.56. https://resolver.caltech.edu/CaltechAUTHORS:20160425-075949394 Skennerton, Connor T. and Haroon, Mohamed F. and Briegel, Ariane et al. (2016) Phylogenomic analysis of Candidatus ‘Izimaplasma’ species: free-living representatives from a Tenericutes clade found in methane seeps. ISME Journal, 10 (11). pp. 2679-2692. ISSN 1751-7362. PMCID PMC5113845. doi:10.1038/ismej.2016.55. https://resolver.caltech.edu/CaltechAUTHORS:20160418-080655842 DePas, William H. and Starwalt-Lee, Ruth and Van Sambeek, Lindsey et al. (2016) Exposing the Three-Dimensional Biogeography and Metabolic States of Pathogens in Cystic Fibrosis Sputum via Hydrogel Embedding, Clearing, and rRNA Labeling. mBio, 7 (5). e00796-16. ISSN 2150-7511. PMCID PMC5040109. doi:10.1128/mBio.00796-16. https://resolver.caltech.edu/CaltechAUTHORS:20160927-144217261 Marshall, Stephen S. and Niesen, Michiel J. M. and Müller, Axel et al. (2016) A Link between Integral Membrane Protein Expression and Simulated Integration Efficiency. Cell Reports, 16 (8). pp. 2169-2177. ISSN 2211-1247. PMCID PMC5001948. doi:10.1016/j.celrep.2016.07.042. https://resolver.caltech.edu/CaltechAUTHORS:20160816-075308782 Fischer, Woodward W. and Hemp, James and Johnson, Jena E. (2016) Evolution of Oxygenic Photosynthesis. Annual Review of Earth and Planetary Sciences, 44 . pp. 647-683. ISSN 0084-6597. doi:10.1146/annurev-earth-060313-054810. https://resolver.caltech.edu/CaltechAUTHORS:20160531-083106180 Xiao, Cheng and Cho, Jounhong Ryan and Zhou, Chunyi et al. (2016) Cholinergic Mesopontine Signals Govern Locomotion and Reward through Dissociable Midbrain Pathways. Neuron, 90 (2). pp. 333-347. ISSN 0896-6273. PMCID PMC4840478. doi:10.1016/j.neuron.2016.03.028. https://resolver.caltech.edu/CaltechAUTHORS:20160420-090626768 Oikonomou, Catherine M. and Jensen, Grant J. (2016) A new view into prokaryotic cell biology from electron cryotomography. Nature Reviews Microbiology, 14 (4). pp. 205-220. ISSN 1740-1526. PMCID PMC5551487. https://resolver.caltech.edu/CaltechAUTHORS:20160307-090319472 Rittle, Jonathan and Peters, Jonas C. (2016) An Fe-N₂ Complex That Generates Hydrazine and Ammonia via Fe═NNH₂: Demonstrating a Hybrid Distal-to-Alternating Pathway for N₂ Reduction. Journal of the American Chemical Society, 138 (12). pp. 4243-4248. ISSN 0002-7863. PMCID PMC5065353. doi:10.1021/jacs.6b01230. https://resolver.caltech.edu/CaltechAUTHORS:20160328-143527690 Ward, Lewis M. and Kirschvink, Joseph L. and Fischer, Woodward W. (2016) Timescales of Oxygenation Following the Evolution of Oxygenic Photosynthesis. Origins of life and evolution of the biosphere, 46 (1). pp. 51-65. ISSN 0169-6149. doi:10.1007/s11084-015-9460-3. https://resolver.caltech.edu/CaltechAUTHORS:20150825-080916332 2015Spatzal, Thomas and Perez, Kathryn A. and Howard, James B. et al. (2015) Catalysis-dependent selenium incorporation and migration in the nitrogenase active site iron-molybdenum cofactor. eLife, 4 . Art. No. e11620. ISSN 2050-084X. PMCID PMC4755756. doi:10.7554/eLife.11620. https://resolver.caltech.edu/CaltechAUTHORS:20151221-153134644 Hemp, James and Ward, Lewis M. and Pace, Laura A. et al. (2015) Draft Genome Sequence of Ardenticatena maritime 110S, a Thermophilic Nitrate- and Iron-Reducing Member of the Chloroflexi Class Ardenticatenia. Genome Announcements, 3 (6). Art. No. e01347-15. ISSN 2169-8287. PMCID PMC4653789. doi:10.1128/genomeA.01347-15. https://resolver.caltech.edu/CaltechAUTHORS:20151221-091145750 Ward, Lewis M. and Hemp, James and Pace, Laura A. et al. (2015) Draft Genome Sequence of Herpetosiphon geysericola GC-42, a Nonphototrophic Member of the Chloroflexi Class Chloroflexia. Genome Announcements, 3 (6). Art. No. e01352-15. ISSN 2169-8287. PMCID PMC4653791. doi:10.1128/genomeA.01352-15. https://resolver.caltech.edu/CaltechAUTHORS:20151221-090706555 Ward, Lewis M. and Hemp, James and Pace, Laura A. et al. (2015) Draft Genome Sequence of Leptolinea tardivitalis YMTK-2, a Mesophilic Anaerobe from the Chloroflexi Class Anaerolineae. Genome Announcements, 3 (6). Art. No. e01356-15. ISSN 2169-8287. PMCID PMC4653795. doi:10.1128/genomeA.01356-15. https://resolver.caltech.edu/CaltechAUTHORS:20151221-084953964 Hemp, James and Ward, Lewis M. and Pace, Laura A. et al. (2015) Draft Genome Sequence of Levilinea saccharolytica KIBI-1, a Member of the Chloroflexi Class Anaerolineae. Genome Announcements, 3 (6). Art. No. e01357-15. ISSN 2169-8287. PMCID PMC4653796. doi:10.1128/genomeA.01357-15. https://resolver.caltech.edu/CaltechAUTHORS:20151221-084436954 Hemp, James and Ward, Lewis M. and Pace, Laura A. et al. (2015) Draft Genome Sequence of Ornatilinea apprima P3M-1, an Anaerobic Member of the Chloroflexi Class Anaerolineae. Genome Announcements, 3 (6). Art. No. e01353-15. ISSN 2169-8287. PMCID PMC4653791. doi:10.1128/genomeA.01353-15. https://resolver.caltech.edu/CaltechAUTHORS:20151221-090203951 Pace, Laura A. and Hemp, James and Ward, Lewis M. et al. (2015) Draft Genome of Thermanaerothrix daxensis GNS-1, a Thermophilic Facultative Anaerobe from the Chloroflexi Class Anaerolineae. Genome Announcements, 3 (6). Art. No. e01354-15. ISSN 2169-8287. PMCID PMC4653792. doi:10.1128/genomeA.01354-15. https://resolver.caltech.edu/CaltechAUTHORS:20151221-085728522 Fischer, Woodward W. and Hemp, James and Johnson, Jena E. (2015) Manganese and the Evolution of Photosynthesis. Origins of Life and Evolution of Biospheres, 45 (3). pp. 351-357. ISSN 0169-6149. doi:10.1007/s11084-015-9442-5. https://resolver.caltech.edu/CaltechAUTHORS:20150602-140446953 Rasmussen, Tim and Rasmussen, Akiko and Singh, Shivani et al. (2015) Properties of the Mechanosensitive Channel MscS Pore Revealed by Tryptophan Scanning Mutagenesis. Biochemistry, 54 (29). pp. 4519-4530. ISSN 0006-2960. PMCID PMC4519979. doi:10.1021/acs.biochem.5b00294. https://resolver.caltech.edu/CaltechAUTHORS:20150827-104629563 Anderson, John S. and Cutsail, George E., III and Rittle, Jonathan et al. (2015) Characterization of an Fe≡N−NH₂ Intermediate Relevant to Catalytic N₂ Reduction to NH₃. Journal of the American Chemical Society, 137 (24). pp. 7803-7809. ISSN 0002-7863. PMCID PMC4603982. doi:10.1021/jacs.5b03432. https://resolver.caltech.edu/CaltechAUTHORS:20150708-084228936 Yano, Jessica M. and Yu, Kristie and Donaldson, Gregory P. et al. (2015) Indigenous Bacteria from the Gut Microbiota Regulate Host Serotonin Biosynthesis. Cell, 161 (2). pp. 264-276. ISSN 0092-8674. PMCID PMC4393509. https://resolver.caltech.edu/CaltechAUTHORS:20150409-093248232 Booth, Ian R. and Miller, Samantha and Müller, Axel et al. (2015) The evolution of bacterial mechanosensitive channels. Cell Calcium, 57 (3). pp. 140-150. ISSN 0143-4160. doi:10.1016/j.ceca.2014.12.011. https://resolver.caltech.edu/CaltechAUTHORS:20150121-095159810 Grodick, Michael A. and Muren, Natalie B. and Barton, Jacqueline K. (2015) DNA Charge Transport within the Cell. Biochemistry, 54 (4). pp. 962-973. ISSN 0006-2960. PMCID PMC4587570. doi:10.1021/bi501520w. https://resolver.caltech.edu/CaltechAUTHORS:20150202-150621170 Zhang, Li-Mei and Morrison, Christine N. and Kaiser, Jens T. et al. (2015) Nitrogenase MoFe protein from Clostridium pasteurianum at 1.08 Å resolution: comparison with the Azotobacter vinelandii MoFe protein. Acta Crystallographica Section D: Biological Crystallography, 71 (2). pp. 274-282. ISSN 0907-4449. PMCID PMC4321486. doi:10.1107/S1399004714025243. https://resolver.caltech.edu/CaltechAUTHORS:20150310-101137660 2014Spatzal, Thomas and Perez, Kathryn A. and Einsle, Oliver et al. (2014) Ligand binding to the FeMo-cofactor: Structures of CO-bound and reactivated nitrogenase. Science, 345 (6204). pp. 1620-1623. ISSN 0036-8075. PMCID PMC4205161. doi:10.1126/science.1256679. https://resolver.caltech.edu/CaltechAUTHORS:20140721-203544454 Grodick, Michael A. and Segal, Helen M. and Zwang, Theodore J. et al. (2014) DNA-Mediated Signaling by Proteins with 4Fe−4S Clusters Is Necessary for Genomic Integrity. Journal of the American Chemical Society, 136 (17). pp. 6470-6478. ISSN 0002-7863. PMCID PMC4017601. doi:10.1021/ja501973c. https://resolver.caltech.edu/CaltechAUTHORS:20140422-093606577 Booth, Ian R. (2014) Bacterial mechanosensitive channels: progress towards an understanding of their roles in cell physiology. Current Opinion in Microbiology, 18 . pp. 16-22. ISSN 1369-5274. PMCID PMC4005912. doi:10.1016/j.mib.2014.01.005. https://resolver.caltech.edu/CaltechAUTHORS:20140403-100546813 Lucey, Kaitlyn S. and Leadbetter, Jared R. (2014) Catechol 2,3-dioxygenase and other meta-cleavage catabolic pathway genes in the “anaerobic” termite gut spirochete Treponema primitia. Molecular Ecology, 23 (6). pp. 1531-1543. ISSN 0962-1083. doi:10.1111/mec.12598. https://resolver.caltech.edu/CaltechAUTHORS:20131204-090224188 Pilhofer, Martin and Aistleitner, Karin and Ladinsky, Mark S. et al. (2014) Architecture and host interface of environmental chlamydiae revealed by electron cryotomography. Environmental Microbiology, 16 (2). pp. 417-429. ISSN 1462-2912. PMCID PMC4949044. doi:10.1111/1462-2920.12299. https://resolver.caltech.edu/CaltechAUTHORS:20140318-101020463 Shikuma, Nicholas J. and Pilhofer, Martin and Weiss, Gregor L. et al. (2014) Marine Tubeworm Metamorphosis Induced by Arrays of Bacterial Phage Tail–Like Structures. Science, 343 (6170). pp. 529-533. ISSN 0036-8075. PMCID PMC4949041. doi:10.1126/science.1246794. https://resolver.caltech.edu/CaltechAUTHORS:20140113-134430398 Olovnikov, Ivan and Le Thomas, Adrien and Aravin, Alexei A. (2014) A Framework for piRNA Cluster Manipulation. In: PIWI-Interacting RNAs: Methods and Protocols. Methods in Molecular Biology. No.1093. Humana Press , New York, NY, pp. 47-58. ISBN 978-1-62703-693-1. https://resolver.caltech.edu/CaltechAUTHORS:20131112-093205322 2013Pilhofer, Martin and Aistleitner, Karin and Biboy, Jacob et al. (2013) Discovery of chlamydial peptidoglycan reveals bacteria with murein sacculi but without FtsZ. Nature Communications, 4 (12). Art. No. 2856. ISSN 2041-1723. PMCID PMC3847603. doi:10.1038/ncomms3856. https://resolver.caltech.edu/CaltechAUTHORS:20140204-110344222 Matson, Eric G. and Rosenthal, Adam Z. and Zhang, Xinning et al. (2013) Genome-Wide Effects of Selenium and Translational Uncoupling on Transcription in the Termite Gut Symbiont Treponema primitia. mBio, 4 (6). Art. No. e00869-13. ISSN 2150-7511. PMCID PMC3892789. doi:10.1128/mBio.00869-13. https://resolver.caltech.edu/CaltechAUTHORS:20140123-094750237 Rosenthal, Adam Z. and Zhang, Xinning and Lucey, Kaitlyn S. et al. (2013) Localizing transcripts to single cells suggests an important role of uncultured deltaproteobacteria in the termite gut hydrogen economy. Proceedings of the National Academy of Sciences of the United States of America, 110 (40). pp. 16163-16168. ISSN 0027-8424. PMCID PMC3791709. doi:10.1073/pnas.1307876110. https://resolver.caltech.edu/CaltechAUTHORS:20130930-102728287 Olovnikov, Ivan and Chan, Ken and Sachidanandam, Ravi et al. (2013) Bacterial Argonaute Samples the Transcriptome to Identify Foreign DNA. Molecular Cell, 51 (5). pp. 594-605. ISSN 1097-2765. PMCID PMC3809076. doi:10.1016/j.molcel.2013.08.014. https://resolver.caltech.edu/CaltechAUTHORS:20140220-100231898 Tocheva, Elitza I. and Dekas, Anne E. and McGlynn, Shawn E. et al. (2013) Polyphosphate Storage during Sporulation in the Gram-Negative Bacterium Acetonema longum. Journal of Bacteriology, 195 (17). pp. 3940-3946. ISSN 0021-9193. PMCID PMC3754598. doi:10.1128/JB.00712-13. https://resolver.caltech.edu/CaltechAUTHORS:20130909-141442695 |
