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Items where Research Group Name is "Caltech Center for Environmental Microbial Interactions (CEMI)"

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Number of items: 60.

2018

Neubauer, Cajetan and Sessions, Alex L. and Booth, Ian R. et al. (2018) Towards measuring growth rates of pathogens during infections by D_2O-labeling lipidomics. Rapid Communications in Mass Spectrometry, 32 (24). pp. 2129-2140. ISSN 0951-4198. http://resolver.caltech.edu/CaltechAUTHORS:20181003-105017642

Schretter, Catherine E. and Vielmetter, Jost and Bartos, Imre et al. (2018) A gut microbial factor modulates locomotor behavior in Drosophila. Nature, 563 (7731). pp. 402-406. ISSN 0028-0836. http://resolver.caltech.edu/CaltechAUTHORS:20180905-135438422

Michel, Alice J. and Ward, Lewis M. and Goffredi, Shana K. et al. (2018) The gut of the finch: uniqueness of the gut microbiome of the Galápagos vampire finch. Microbiome, 6 . Art. No. 167. ISSN 2049-2618. PMCID PMC6146768. http://resolver.caltech.edu/CaltechAUTHORS:20180919-102939169

Lu, George J. and Farhadi, Arash and Mukherjee, Arnab et al. (2018) Proteins, air and water: reporter genes for ultrasound and magnetic resonance imaging. Current Opinion in Chemical Biology, 45 . pp. 57-63. ISSN 1367-5931. http://resolver.caltech.edu/CaltechAUTHORS:20180322-135005180

Lewis, Russell D. and Garcia-Borràs, Marc and Chalkley, Matthew J. et al. (2018) Catalytic iron-carbene intermediate revealed in a cytochrome c carbene transferase. Proceedings of the National Academy of Sciences of the United States of America, 115 (28). pp. 7308-7313. ISSN 0027-8424. PMCID PMC6048479. http://resolver.caltech.edu/CaltechAUTHORS:20180626-131945645

Maresca, David and Lakshmanan, Anupama and Abedi, Mohamed et al. (2018) Biomolecular Ultrasound and Sonogenetics. Annual Review of Chemical and Biomolecular Engineering, 9 . pp. 229-252. ISSN 1947-5438. http://resolver.caltech.edu/CaltechAUTHORS:20180330-152125173

Rosenthal, Adam Z. and Qi, Yutao and Hormoz, Sahand et al. (2018) Metabolic interactions between dynamic bacterial subpopulations. eLife, 7 . Art. No. e33099. ISSN 2050-084X. PMCID PMC6025961. http://resolver.caltech.edu/CaltechAUTHORS:20180604-074815229

Chalkley, Matthew J. and Del Castillo, Trevor J. and Matson, Benjamin D. et al. (2018) Fe-Mediated Nitrogen Fixation with a Metallocene Mediator: Exploring pK_a Effects and Demonstrating Electrocatalysis. Journal of the American Chemical Society, 140 (19). pp. 6122-6129. ISSN 0002-7863. http://resolver.caltech.edu/CaltechAUTHORS:20180418-164723702

Arnett, Charles H. and Chalkley, Matthew J. and Agapie, Theodor (2018) A Thermodynamic Model for Redox-Dependent Binding of Carbon Monoxide at Site-Differentiated, High Spin Iron Clusters. Journal of the American Chemical Society, 140 (16). pp. 5569-5578. ISSN 0002-7863. http://resolver.caltech.edu/CaltechAUTHORS:20180329-110229274

Brandenberg, Oliver F. and Prier, Christopher K. and Chen, Kai et al. (2018) Stereoselective Enzymatic Synthesis of Heteroatom-Substituted Cyclopropanes. ACS Catalysis, 8 (4). pp. 2629-2634. ISSN 2155-5435. http://resolver.caltech.edu/CaltechAUTHORS:20180312-085606768

Subramanian, Poorna and Pirbadian, Sahand and El-Naggar, Mohamed Y. et al. (2018) Ultrastructure of Shewanella oneidensis MR-1 nanowires revealed by electron cryotomography. Proceedings of the National Academy of Sciences of the United States of America, 115 (14). E3246-E3255. ISSN 0027-8424. PMCID PMC5889646. http://resolver.caltech.edu/CaltechAUTHORS:20170619-134442390

Knight, Anders M. and Kan, S. B. Jennifer and Lewis, Russell D. et al. (2018) Diverse engineered heme proteins enable stereodivergent cyclopropanation of unactivated alkenes. ACS Central Science, 4 (3). pp. 372-377. ISSN 2374-7943. PMCID PMC5879470. http://resolver.caltech.edu/CaltechAUTHORS:20171220-092532762

Ward, Lewis M. and Hemp, James and Shih, Patrick M. et al. (2018) Evolution of Phototrophy in the Chloroflexi Phylum Driven by Horizontal Gene Transfer. Frontiers in Microbiology, 9 . Art. No. 260. ISSN 1664-302X. http://resolver.caltech.edu/CaltechAUTHORS:20180307-130527925

Davis, Hunter C. and Ramesh, Pradeep and Bhatnagar, Aadyot et al. (2018) Mapping the microscale origins of magnetic resonance image contrast with subcellular diamond magnetometry. Nature Communications, 9 . Art. No. 131. ISSN 2041-1723. PMCID PMC5760582. http://resolver.caltech.edu/CaltechAUTHORS:20161205-095517669

2017

Niesen, Michiel J. M. and Marshall, Stephen S. and Miller, Thomas F., III et al. (2017) Improving membrane protein expression by optimizing integration efficiency. Journal of Biological Chemistry, 292 (47). pp. 19537-19545. ISSN 0021-9258. PMCID PMC5702688. http://resolver.caltech.edu/CaltechAUTHORS:20170925-084831113

Piraner, Dan I. and Farhadi, Arash and Davis, Hunter C. et al. (2017) Going Deeper: Biomolecular Tools for Acoustic and Magnetic Imaging and Control of Cellular Function. Biochemistry, 56 (39). pp. 5202-5209. ISSN 0006-2960. http://resolver.caltech.edu/CaltechAUTHORS:20170814-132937862

Oikonomou, Catherine M. and Jensen, Grant J. (2017) Cellular Electron Cryotomography: Toward Structural Biology In Situ. Annual Review of Biochemistry, 86 . pp. 873-896. ISSN 0066-4154. http://resolver.caltech.edu/CaltechAUTHORS:20170421-082204689

Bedbrook, Claire N. and Rice, Austin J. and Yang, Kevin K. et al. (2017) Structure-guided SCHEMA recombination generates diverse chimeric channelrhodopsins. Proceedings of the National Academy of Sciences of the United States of America, 114 (13). E2624-E2633. ISSN 0027-8424. PMCID PMC5380088. http://resolver.caltech.edu/CaltechAUTHORS:20170310-130542741

Herwig, Lukas and Rice, Austin J. and Bedbrook, Claire N. et al. (2017) Directed Evolution of a Bright Near-Infrared Fluorescent Rhodopsin Using a Synthetic Chromophore. Cell Chemical Biology, 24 (3). pp. 415-425. ISSN 2451-9456. PMCID PMC5357175. http://resolver.caltech.edu/CaltechAUTHORS:20170307-082231020

Rittle, Jonathan and Peters, Jonas C. (2017) N-H Bond Dissociation Enthalpies and Facile H-atom Transfers for Early Intermediates of Fe-N_2 and Fe-CN Reductions. Journal of the American Chemical Society, 139 (8). pp. 3161-3170. ISSN 0002-7863. http://resolver.caltech.edu/CaltechAUTHORS:20170201-092020177

Glenn, Weslee S. and Stone, Shannon E. and Ho, Samuel H. et al. (2017) BONCAT enables time-resolved analysis of protein synthesis in native plant tissue. Plant Physiology, 173 (3). pp. 1543-1553. ISSN 0032-0889. http://resolver.caltech.edu/CaltechAUTHORS:20170123-111643957

Stone, Shannon E. and Glenn, Weslee S. and Hamblin, Graham D. et al. (2017) Cell-selective proteomics for biological discovery. Current Opinion in Chemical Biology, 36 . pp. 50-57. ISSN 1367-5931. PMCID PMC5337159. http://resolver.caltech.edu/CaltechAUTHORS:20170117-150138453

Maker, Allison and Hemp, James and Pace, Laura A. et al. (2017) Draft Genome Sequence of Hydrogenibacillus schlegelii MA48, a Deep-Branching Member of the Bacilli Class of Firmicutes. Genome Announcements, 5 (3). Art. No. e00380-16. ISSN 2169-8287. PMCID PMC5255923. http://resolver.caltech.edu/CaltechAUTHORS:20170130-083631885

Shih, P. M. and Hemp, J. and Ward, L. M. et al. (2017) Crown group Oxyphotobacteria postdate the rise of oxygen. Geobiology, 15 (1). pp. 19-29. ISSN 1472-4677. http://resolver.caltech.edu/CaltechAUTHORS:20160718-081438054

2016

Ho, Samuel H. and Tirrell, David A. (2016) Chemoenzymatic Labeling of Proteins for Imaging in Bacterial Cells. Journal of the American Chemical Society, 138 (46). pp. 15098-15101. ISSN 0002-7863. http://resolver.caltech.edu/CaltechAUTHORS:20161116-100355067

Hemp, James and Lücker, Sebastian and Schott, Joachim et al. (2016) Genomics of a phototrophic nitrite oxidizer: insights into the evolution of photosynthesis and nitrification. ISME Journal, 10 (11). pp. 2669-2678. ISSN 1751-7362. http://resolver.caltech.edu/CaltechAUTHORS:20160425-075949394

Skennerton, Connor T. and Haroon, Mohamed F. and Briegel, Ariane et al. (2016) Phylogenomic analysis of Candidatus ‘Izimaplasma’ species: free-living representatives from a Tenericutes clade found in methane seeps. ISME Journal, 10 (11). pp. 2679-2692. ISSN 1751-7362. PMCID PMC5113845. http://resolver.caltech.edu/CaltechAUTHORS:20160418-080655842

DePas, William H. and Starwalt-Lee, Ruth and Van Sambeek, Lindsey et al. (2016) Exposing the Three-Dimensional Biogeography and Metabolic States of Pathogens in Cystic Fibrosis Sputum via Hydrogel Embedding, Clearing, and rRNA Labeling. mBio, 7 (5). e00796-16. ISSN 2150-7511. PMCID PMC5040109. http://resolver.caltech.edu/CaltechAUTHORS:20160927-144217261

Marshall, Stephen S. and Niesen, Michiel J. M. and Müller, Axel et al. (2016) A Link between Integral Membrane Protein Expression and Simulated Integration Efficiency. Cell Reports, 16 (8). pp. 2169-2177. ISSN 2211-1247. PMCID PMC5001948. http://resolver.caltech.edu/CaltechAUTHORS:20160816-075308782

Fischer, Woodward W. and Hemp, James and Johnson, Jena E. (2016) Evolution of Oxygenic Photosynthesis. Annual Review of Earth and Planetary Sciences, 44 . pp. 647-683. ISSN 0084-6597. http://resolver.caltech.edu/CaltechAUTHORS:20160531-083106180

Xiao, Cheng and Cho, Jounhong Ryan and Zhou, Chunyi et al. (2016) Cholinergic Mesopontine Signals Govern Locomotion and Reward through Dissociable Midbrain Pathways. Neuron, 90 (2). pp. 333-347. ISSN 0896-6273. PMCID PMC4840478. http://resolver.caltech.edu/CaltechAUTHORS:20160420-090626768

Oikonomou, Catherine M. and Jensen, Grant J. (2016) A new view into prokaryotic cell biology from electron cryotomography. Nature Reviews Microbiology, 14 (4). pp. 205-220. ISSN 1740-1526. PMCID PMC5551487. http://resolver.caltech.edu/CaltechAUTHORS:20160307-090319472

Rittle, Jonathan and Peters, Jonas C. (2016) An Fe-N_2 Complex That Generates Hydrazine and Ammonia via Fe═NNH_2: Demonstrating a Hybrid Distal-to-Alternating Pathway for N_2 Reduction. Journal of the American Chemical Society, 138 (12). pp. 4243-4248. ISSN 0002-7863. PMCID PMC5065353. http://resolver.caltech.edu/CaltechAUTHORS:20160328-143527690

Ward, Lewis M. and Kirschvink, Joseph L. and Fischer, Woodward W. (2016) Timescales of Oxygenation Following the Evolution of Oxygenic Photosynthesis. Origins of life and evolution of the biosphere, 46 (1). pp. 51-65. ISSN 0169-6149. http://resolver.caltech.edu/CaltechAUTHORS:20150825-080916332

2015

Spatzal, Thomas and Perez, Kathryn A. and Howard, James B. et al. (2015) Catalysis-dependent selenium incorporation and migration in the nitrogenase active site iron-molybdenum cofactor. eLife, 4 . Art. No. e11620. ISSN 2050-084X. PMCID PMC4755756. http://resolver.caltech.edu/CaltechAUTHORS:20151221-153134644

Hemp, James and Ward, Lewis M. and Pace, Laura A. et al. (2015) Draft Genome Sequence of Ardenticatena maritime 110S, a Thermophilic Nitrate- and Iron-Reducing Member of the Chloroflexi Class Ardenticatenia. Genome Announcements, 3 (6). Art. No. e01347-15. ISSN 2169-8287. PMCID PMC4653789. http://resolver.caltech.edu/CaltechAUTHORS:20151221-091145750

Ward, Lewis M. and Hemp, James and Pace, Laura A. et al. (2015) Draft Genome Sequence of Herpetosiphon geysericola GC-42, a Nonphototrophic Member of the Chloroflexi Class Chloroflexia. Genome Announcements, 3 (6). Art. No. e01352-15. ISSN 2169-8287. PMCID PMC4653791. http://resolver.caltech.edu/CaltechAUTHORS:20151221-090706555

Ward, Lewis M. and Hemp, James and Pace, Laura A. et al. (2015) Draft Genome Sequence of Leptolinea tardivitalis YMTK-2, a Mesophilic Anaerobe from the Chloroflexi Class Anaerolineae. Genome Announcements, 3 (6). Art. No. e01356-15. ISSN 2169-8287. PMCID PMC4653795. http://resolver.caltech.edu/CaltechAUTHORS:20151221-084953964

Hemp, James and Ward, Lewis M. and Pace, Laura A. et al. (2015) Draft Genome Sequence of Levilinea saccharolytica KIBI-1, a Member of the Chloroflexi Class Anaerolineae. Genome Announcements, 3 (6). Art. No. e01357-15. ISSN 2169-8287. PMCID PMC4653796. http://resolver.caltech.edu/CaltechAUTHORS:20151221-084436954

Hemp, James and Ward, Lewis M. and Pace, Laura A. et al. (2015) Draft Genome Sequence of Ornatilinea apprima P3M-1, an Anaerobic Member of the Chloroflexi Class Anaerolineae. Genome Announcements, 3 (6). Art. No. e01353-15. ISSN 2169-8287. PMCID PMC4653791. http://resolver.caltech.edu/CaltechAUTHORS:20151221-090203951

Pace, Laura A. and Hemp, James and Ward, Lewis M. et al. (2015) Draft Genome of Thermanaerothrix daxensis GNS-1, a Thermophilic Facultative Anaerobe from the Chloroflexi Class Anaerolineae. Genome Announcements, 3 (6). Art. No. e01354-15. ISSN 2169-8287. PMCID PMC4653792. http://resolver.caltech.edu/CaltechAUTHORS:20151221-085728522

Fischer, Woodward W. and Hemp, James and Johnson, Jena E. (2015) Manganese and the Evolution of Photosynthesis. Origins of Life and Evolution of Biospheres, 45 (3). pp. 351-357. ISSN 0169-6149. http://resolver.caltech.edu/CaltechAUTHORS:20150602-140446953

Rasmussen, Tim and Rasmussen, Akiko and Singh, Shivani et al. (2015) Properties of the Mechanosensitive Channel MscS Pore Revealed by Tryptophan Scanning Mutagenesis. Biochemistry, 54 (29). pp. 4519-4530. ISSN 0006-2960. PMCID PMC4519979. http://resolver.caltech.edu/CaltechAUTHORS:20150827-104629563

Anderson, John S. and Cutsail, George E., III and Rittle, Jonathan et al. (2015) Characterization of an Fe≡N−NH_2 Intermediate Relevant to Catalytic N_2 Reduction to NH_3. Journal of the American Chemical Society, 137 (24). pp. 7803-7809. ISSN 0002-7863. PMCID PMC4603982. http://resolver.caltech.edu/CaltechAUTHORS:20150708-084228936

Yano, Jessica M. and Yu, Kristie and Donaldson, Gregory P. et al. (2015) Indigenous Bacteria from the Gut Microbiota Regulate Host Serotonin Biosynthesis. Cell, 161 (2). pp. 264-276. ISSN 0092-8674. PMCID PMC4393509. http://resolver.caltech.edu/CaltechAUTHORS:20150409-093248232

Booth, Ian R. and Miller, Samantha and Müller, Axel et al. (2015) The evolution of bacterial mechanosensitive channels. Cell Calcium, 57 (3). pp. 140-150. ISSN 0143-4160. http://resolver.caltech.edu/CaltechAUTHORS:20150121-095159810

Grodick, Michael A. and Muren, Natalie B. and Barton, Jacqueline K. (2015) DNA Charge Transport within the Cell. Biochemistry, 54 (4). pp. 962-973. ISSN 0006-2960. PMCID PMC4587570. http://resolver.caltech.edu/CaltechAUTHORS:20150202-150621170

Zhang, Li-Mei and Morrison, Christine N. and Kaiser, Jens T. et al. (2015) Nitrogenase MoFe protein from Clostridium pasteurianum at 1.08 Å resolution: comparison with the Azotobacter vinelandii MoFe protein. Acta Crystallographica Section D: Biological Crystallography, 71 (2). pp. 274-282. ISSN 0907-4449. PMCID PMC4321486. http://resolver.caltech.edu/CaltechAUTHORS:20150310-101137660

2014

Spatzal, Thomas and Perez, Kathryn A. and Einsle, Oliver et al. (2014) Ligand binding to the FeMo-cofactor: Structures of CO-bound and reactivated nitrogenase. Science, 345 (6204). pp. 1620-1623. ISSN 0036-8075. PMCID PMC4205161. http://resolver.caltech.edu/CaltechAUTHORS:20140721-203544454

Grodick, Michael A. and Segal, Helen M. and Zwang, Theodore J. et al. (2014) DNA-Mediated Signaling by Proteins with 4Fe−4S Clusters Is Necessary for Genomic Integrity. Journal of the American Chemical Society, 136 (17). pp. 6470-6478. ISSN 0002-7863. PMCID PMC4017601. http://resolver.caltech.edu/CaltechAUTHORS:20140422-093606577

Booth, Ian R. (2014) Bacterial mechanosensitive channels: progress towards an understanding of their roles in cell physiology. Current Opinion in Microbiology, 18 . pp. 16-22. ISSN 1369-5274. PMCID PMC4005912. http://resolver.caltech.edu/CaltechAUTHORS:20140403-100546813

Lucey, Kaitlyn S. and Leadbetter, Jared R. (2014) Catechol 2,3-dioxygenase and other meta-cleavage catabolic pathway genes in the “anaerobic” termite gut spirochete Treponema primitia. Molecular Ecology, 23 (6). pp. 1531-1543. ISSN 0962-1083. http://resolver.caltech.edu/CaltechAUTHORS:20131204-090224188

Pilhofer, Martin and Aistleitner, Karin and Ladinsky, Mark S. et al. (2014) Architecture and host interface of environmental chlamydiae revealed by electron cryotomography. Environmental Microbiology, 16 (2). pp. 417-429. ISSN 1462-2912. PMCID PMC4949044. http://resolver.caltech.edu/CaltechAUTHORS:20140318-101020463

Shikuma, Nicholas J. and Pilhofer, Martin and Weiss, Gregor L. et al. (2014) Marine Tubeworm Metamorphosis Induced by Arrays of Bacterial Phage Tail–Like Structures. Science, 343 (6170). pp. 529-533. ISSN 0036-8075. PMCID PMC4949041. http://resolver.caltech.edu/CaltechAUTHORS:20140113-134430398

Olovnikov, Ivan and Le Thomas, Adrien and Aravin, Alexei A. (2014) A Framework for piRNA Cluster Manipulation. In: PIWI-Interacting RNAs: Methods and Protocols. Methods in Molecular Biology. No.1093. Humana Press , New York, NY, pp. 47-58. ISBN 978-1-62703-693-1. http://resolver.caltech.edu/CaltechAUTHORS:20131112-093205322

2013

Pilhofer, Martin and Aistleitner, Karin and Biboy, Jacob et al. (2013) Discovery of chlamydial peptidoglycan reveals bacteria with murein sacculi but without FtsZ. Nature Communications, 4 (12). Art. No. 2856. ISSN 2041-1723. http://resolver.caltech.edu/CaltechAUTHORS:20140204-110344222

Matson, Eric G. and Rosenthal, Adam Z. and Zhang , Xinning et al. (2013) Genome-Wide Effects of Selenium and Translational Uncoupling on Transcription in the Termite Gut Symbiont Treponema primitia. mBio, 4 (6). Art. No. e00869-13. ISSN 2150-7511. PMCID PMC3892789. http://resolver.caltech.edu/CaltechAUTHORS:20140123-094750237

Rosenthal, Adam Z. and Zhang, Xinning and Lucey, Kaitlyn S. et al. (2013) Localizing transcripts to single cells suggests an important role of uncultured deltaproteobacteria in the termite gut hydrogen economy. Proceedings of the National Academy of Sciences of the United States of America, 110 (40). pp. 16163-16168. ISSN 0027-8424. PMCID PMC3791709. http://resolver.caltech.edu/CaltechAUTHORS:20130930-102728287

Olovnikov, Ivan and Chan, Ken and Sachidanandam, Ravi et al. (2013) Bacterial Argonaute Samples the Transcriptome to Identify Foreign DNA. Molecular Cell, 51 (5). pp. 594-605. ISSN 1097-2765. PMCID PMC3809076. http://resolver.caltech.edu/CaltechAUTHORS:20140220-100231898

Tocheva, Elitza I. and Dekas, Anne E. and McGlynn, Shawn E. et al. (2013) Polyphosphate Storage during Sporulation in the Gram-Negative Bacterium Acetonema longum. Journal of Bacteriology, 195 (17). pp. 3940-3946. ISSN 0021-9193. PMCID PMC3754598. http://resolver.caltech.edu/CaltechAUTHORS:20130909-141442695

This list was generated on Tue Dec 11 05:02:38 2018 PST.