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Items where Research Group Name is "Millard and Muriel Jacobs Genetics and Genomics Laboratory"

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Number of items: 47.


Goronzy, Isabel N. and Quinodoz, Sofia A. and Jachowicz, Joanna W. et al. (2022) Simultaneous mapping of 3D structure and nascent RNAs argues against nuclear compartments that preclude transcription. Cell Reports, 41 (9). Art. No. 111730. ISSN 2211-1247. PMCID PMC9793828. doi:10.1016/j.celrep.2022.111730.

Shin, Boyoung and Zhou, Wen and Wang, Jue et al. (2022) Runx factors launch T-cell and innate lymphoid programs via direct and gene network-based mechanisms. . doi:10.1101/2022.11.18.517146. (Unpublished)

Goertsen, David and Goeden, Nick and Flytzanis, Nicholas C. et al. (2022) Targeting the lung epithelium after intravenous delivery by directed evolution of underexplored sites on the AAV capsid. Molecular Therapy - Methods & Clinical Development, 26 . pp. 331-342. ISSN 2329-0501. doi:10.1016/j.omtm.2022.07.010.

Yang, Chien-I and Zhu, Zikun and Jones, Jeffrey J. et al. (2022) System-wide analyses reveal essential roles of N-terminal protein modification in bacterial membrane integrity. iScience, 25 (8). Art. No. 104756. ISSN 2589-0042. PMCID PMC9356101. doi:10.1016/j.isci.2022.104756.

Galton, Riley and Fejes-Tóth, Katalin and Bronner, Marianne E. (2022) Co-option of the piRNA pathway to regulate neural crest specification. Science Advances, 8 (32). Art. No. abn1441. ISSN 2375-2548. doi:10.1126/sciadv.abn1441.

Yu, Hang and Speth, Daan R. and Connon, Stephanie A. et al. (2022) Community Structure and Microbial Associations in Sediment-Free Methanotrophic Enrichment Cultures from a Marine Methane Seep. Applied and Environmental Microbiology, 88 (11). Art. No. e0210921. ISSN 0099-2240. PMCID PMC9195934. doi:10.1128/aem.02109-21.

Zhu, Zikun and Wang, Shuai and Shan, Shu-ou (2022) Ribosome profiling reveals multiple roles of SecA in cotranslational protein export. Nature Communications, 13 . Art. No. 3393. ISSN 2041-1723. PMCID PMC9192764. doi:10.1038/s41467-022-31061-5.

Wang, Megan and Sanfiorenzo, Charles and Zhang, Raymond J. et al. (2022) A universal system for streamlined genome integrations with CRISPR-associated transposases. . doi:10.1101/2022.05.30.494051. (Unpublished)

Zhou, Wen and Gao, Fan and Romero-Wolf, Maile et al. (2022) Single-cell deletion analyses show control of pro–T cell developmental speed and pathways by Tcf7, Spi1, Gata3, Bcl11a, Erg, and Bcl11b. Science Immunology, 7 (71). Art. No. eabm1920. ISSN 2470-9468. doi:10.1126/sciimmunol.abm1920.

Tang, Weiyi and Jacobs-Li, Jessica and Li, Can et al. (2022) Single-cell profiling coupled with lineage analysis reveals distinct sacral neural crest contributions to the developing enteric nervous. . doi:10.1101/2022.05.09.491197. (Unpublished)

Ma, Yitong and Budde, Mark W. and Mayalu, Michaëlle N. et al. (2022) Synthetic mammalian signaling circuits for robust cell population control. Cell, 185 (6). pp. 967-979. ISSN 0092-8674. PMCID PMC8995209. doi:10.1016/j.cell.2022.01.026.

Arrastia, Mary V. and Jachowicz, Joanna W. and Ollikainen, Noah et al. (2022) Single-cell measurement of higher-order 3D genome organization with scSPRITE. Nature Biotechnology, 40 (1). pp. 64-73. ISSN 1087-0156. doi:10.1038/s41587-021-00998-1.


Inglis, Alison J. and Guna, Alina and Gálvez Merchán, Ángel et al. (2021) Coupled protein quality control during nonsense mediated mRNA decay. . doi:10.1101/2021.12.22.473893. (Unpublished)

Chen, Peiwei and Luo, Yicheng and Aravin, Alexei A. (2021) RDC complex executes a dynamic piRNA program during Drosophila spermatogenesis to safeguard male fertility. PLoS Genetics, 17 (9). Art. No. e1009591. ISSN 1553-7390. PMCID PMC8412364. doi:10.1371/journal.pgen.1009591.

Buchman, Anna and Shriner, Isaiah and Yang, Ting et al. (2021) Engineered reproductively isolated species drive reversible population replacement. Nature Communications, 12 . Art. No. 3281. ISSN 2041-1723. doi:10.1038/s41467-021-23531-z.

Chen, Peiwei and Kotov, Alexei A. and Godneeva, Baira K. et al. (2021) piRNA-mediated gene regulation and adaptation to sex-specific transposon expression in D. melanogaster male germline. Genes and Development, 35 (11-12). pp. 914-935. ISSN 0890-9369. PMCID PMC8168559. doi:10.1101/gad.345041.120.

Dahlstrom, Kurt M. and Newman, Dianne K. (2021) Paraburkholderia edwinii protects Aspergillus sp. from phenazines by acting as a toxin sponge. . doi:10.1101/2021.03.28.437412. (Unpublished)

Hutchins, Erica J. and Piacentino, Michael L. and Bronner, Marianne E. (2021) Transcriptomic Identification of Draxin-Responsive Targets During Cranial Neural Crest EMT. Frontiers in Physiology, 12 . Art. No. 624037. ISSN 1664-042X. PMCID PMC7886793. doi:10.3389/fphys.2021.624037.


Finn, Paul B. and Bhimsaria, Devesh and Ali, Asfa et al. (2020) Single position substitution of hairpin pyrrole-imidazole polyamides imparts distinct DNA-binding profiles across the human genome. PLoS ONE, 15 (12). Art. No. e0243905. ISSN 1932-6203.

Sun, Simo and Shinya, Ryoji and Dayi, Mehmet et al. (2020) Telomere-to-Telomere Genome Assembly of Bursaphelenchus okinawaensis Strain SH1. Microbiology Resource Announcements, 9 (43). Art. No. e01000-20. ISSN 2576-098X. PMCID PMC7585841. doi:10.1128/mra.01000-20.

Khazaei, Tahmineh and Williams, Rory L. and Bogatyrev, Said R. et al. (2020) Metabolic multistability and hysteresis in a model aerobe-anaerobe microbiome community. Science Advances, 6 (33). Art. No. eaba0353. ISSN 2375-2548. PMCID PMC7423363. doi:10.1126/sciadv.aba0353.

Zhang, Yandong and Sohn, Changho and Lee, Seoyeon et al. (2020) Detecting protein and post-translational modifications in single cells with iDentification and qUantification sEparaTion (DUET). Communications Biology, 3 . Art. No. 420. ISSN 2399-3642.

Walton, Sophie J. and Wang, Han and Quintero-Cadena, Porfirio et al. (2020) Caenorhabditis elegans AF4/FMR2 Family Homolog affl-2 Regulates Heat-Shock-Induced Gene Expression. Genetics, 215 (4). pp. 1039-1054. ISSN 0016-6731. PMCID PMC7404228.

He, Peng and Williams, Brian A. and Trout, Diane et al. (2020) The changing mouse embryo transcriptome at whole tissue and single-cell resolution. Nature, 583 (7818). pp. 760-767. ISSN 0028-0836.

Koromila, Theodora and Gao, Fan and Iwasaki, Yasuno et al. (2020) Odd-paired is a pioneer-like factor that coordinates with Zelda to control gene expression in embryos. eLife, 9 . Art. No. e59610. ISSN 2050-084X. PMCID PMC7417190.

Yu, Hang and Leadbetter, Jared R. (2020) Bacterial chemolithoautotrophy via manganese oxidation. Nature, 583 (7816). pp. 453-458. ISSN 0028-0836. PMCID PMC7802741.

Quintero-Cadena, Porfirio and Lenstra, Tineke L. and Sternberg, Paul W. (2020) RNA Pol II Length and Disorder Enable Cooperative Scaling of Transcriptional Bursting. Molecular Cell, 79 (2). pp. 207-220. ISSN 1097-2765.

Dalla Benetta, Elena and Antoshechkin, Igor and Yang, Ting et al. (2020) Genome Elimination Mediated by Gene Expression from a Selfish Chromosome. Science Advances, 6 (14). Art. No. eaaz9808. ISSN 2375-2548. PMCID PMC7124933. doi:10.1126/sciadv.aaz9808.

Gamez, Stephanie and Antoshechkin, Igor and Mendez-Sanchez, Stelia C. et al. (2020) The Developmental Transcriptome of Aedes albopictus, a Major Worldwide Human Disease Vector. G3, 10 (3). pp. 1051-1062. ISSN 2160-1836. PMCID PMC7056973.

Khazaei, Tahmineh and Williams, Rory L. and Bogatyrev, Said R. et al. (2020) Metabolic multi-stability and hysteresis in a model aerobe-anaerobe microbiome community. . doi:10.1101/2020.02.28.968941. (Unpublished)

Basta, David W. and Angeles-Albores, David and Spero, Melanie A. et al. (2020) Heat-shock proteases promote survival of Pseudomonas aeruginosa during growth arrest. Proceedings of the National Academy of Sciences of the United States of America, 117 (8). pp. 4358-4367. ISSN 0027-8424. PMCID PMC7049150. doi:10.1073/pnas.1912082117.


Tang, Weiyi and Martik, Megan L. and Li, Yuwei et al. (2019) Cardiac neural crest contributes to cardiomyocytes in amniotes and heart regeneration in zebrafish. eLife, 8 . Art. No. e47929. ISSN 2050-084X. PMCID PMC6721792. doi:10.7554/elife.47929.

Perry, Elena K. and Newman, Dianne K. (2019) The transcription factors ActR and SoxR differentially affect the phenazine tolerance of Agrobacterium tumefaciens. Molecular Microbiology, 112 (1). pp. 199-218. ISSN 0950-382X. PMCID PMC6615960. doi:10.1111/mmi.14263.


Khazaei, Tahmineh and Barlow, Jacob T. and Schoepp, Nathan G. et al. (2018) RNA markers enable phenotypic test of antibiotic susceptibility in Neisseria gonorrhoeae after 10 minutes of ciprofloxacin exposure. Scientific Reports, 8 . Art. No. 11606. ISSN 2045-2322. PMCID PMC6072703. doi:10.1038/s41598-018-29707-w.


Kim, Jocelyn T. and Liu, Yarong and Kulkarni, Rajan P. et al. (2017) Dendritic cell–targeted lentiviral vector immunization uses pseudotransduction and DNA-mediated STING and cGAS activation. Science Immunology, 2 (13). Art. No. eaal1329. ISSN 2470-9468. PMCID PMC5845465. doi:10.1126/sciimmunol.aal1329.

Seet, Christopher S. and He, Chongbin and Bethune, Michael T. et al. (2017) Generation of mature T cells from human hematopoietic stem and progenitor cells in artificial thymic organoids. Nature Methods, 14 (5). pp. 521-530. ISSN 1548-7091. PMCID PMC5426913. doi:10.1038/nmeth.4237.


Nath, Ravi D. and Chow, Elly S. and Wang, Han et al. (2016) C. elegans Stress-Induced Sleep Emerges from the Collective Action of Multiple Neuropeptides. Current Biology, 26 (18). pp. 2446-2455. ISSN 0960-9822. PMCID PMC5694219. doi:10.1016/j.cub.2016.07.048.

Babin, Brett M. and Bergkessel, Megan and Sweredoski, Michael J. et al. (2016) SutA is a bacterial transcription factor expressed during slow growth in Pseudomonas aeruginosa. Proceedings of the National Academy of Sciences of the United States of America, 113 (5). E597-E605. ISSN 0027-8424. PMCID PMC4747698. doi:10.1073/pnas.1514412113.


Henley, Beverley M. and Williams, Brian A. and Srinivasan, Rahul et al. (2013) Transcriptional regulation by nicotine in dopaminergic neurons. Biochemical Pharmacology, 86 (8). pp. 1074-1083. ISSN 0006-2952. PMCID PMC3969234. doi:10.1016/j.bcp.2013.07.031.

Akbari, Omar S. and Amrhein, Henry and Williams, Brian et al. (2013) The Developmental Transcriptome of the Mosquito Aedes aegypti, an Invasive Species and Major Arbovirus Vector. G3, 3 (9). pp. 1493-1509. ISSN 2160-1836. PMCID PMC3755910. doi:10.1534/g3.113.006742.


Zhang, Jingli A. and Mortazavi, Ali and Williams, Brian A. et al. (2012) Dynamic Transformations of Genome-wide Epigenetic Marking and Transcriptional Control Establish T Cell Identity. Cell, 149 (2). pp. 467-482. ISSN 0092-8674. PMCID PMC3336965. doi:10.1016/j.cell.2012.01.056.


Hao, Shengli and Baltimore, David (2009) The stability of mRNA influences the temporal order of the induction of genes encoding inflammatory molecules. Nature Immunology, 10 (3). pp. 281-288. ISSN 1529-2908. PMCID PMC2775040. doi:10.1038/ni.1699.


Vikalo, Haris and Hassibi, Babak and Hassibi, Arjang (2008) Modeling and Estimation for Real-Time Microarrays. IEEE Journal of Selected Topics in Signal Processing, 2 (3). pp. 286-296. ISSN 1932-4553. doi:10.1109/JSTSP.2008.924383.

O'Connell, Ryan M. and Rao, Dinesh S. and Chaudhuri, Aadel A. et al. (2008) Sustained expression of microRNA-155 in hematopoietic stem cells causes a myeloproliferative disorder. Journal of Experimental Medicine, 205 (3). pp. 585-594. ISSN 0022-1007. PMCID PMC2275382. doi:10.1084/jem.20072108.


Kannangara, Rubini and Branigan, Caroline and Liu, Yan et al. (2007) The Transcription Factor WIN1/SHN1 Regulates Cutin Biosynthesis in Arabidopsis thaliana. Plant Cell, 19 (4). pp. 1278-1294. ISSN 1040-4651. PMCID PMC1913754. doi:10.1105/tpc.106.047076.

O'Connell, Ryan M. and Taganov, Konstantin D. and Boldin, Mark P. et al. (2007) MicroRNA-155 is induced during the macrophage inflammatory response. Proceedings of the National Academy of Sciences of the United States of America, 105 (5). pp. 1604-1609. ISSN 0027-8424. PMCID PMC1780072. doi:10.1073/pnas.0610731104.


Taganov, Konstantin D. and Boldin, Mark P. and Chang, Kuang-Jung et al. (2006) NF-{kappa}B-dependent induction of microRNA miR-146, an inhibitor targeted to signaling proteins of innate immune responses. Proceedings of the National Academy of Sciences of the United States of America, 103 (33). pp. 12481-12486. ISSN 0027-8424. PMCID PMC1567904. doi:10.1073/pnas.0605298103.

This list was generated on Mon Mar 20 13:02:22 2023 UTC.