Items where Research Group Name is "Rosen Bioengineering Center"

2020

Belliveau, Nathan M. and Chure, Griffin and Hueschen, Christina L. et al. (2020) Fundamental limits on the rate of bacterial growth. . (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20201021-080615473

Rabut, Claire and Yoo, Sangjin and Hurt, Robert C. et al. (2020) Ultrasound Technologies for Imaging and Modulating Neural Activity. Neuron, 108 (1). pp. 93-110. ISSN 0896-6273. https://resolver.caltech.edu/CaltechAUTHORS:20201019-101559925

Saunders, Scott H. and Tse, Edmund C. M. and Yates, Matthew D. et al. (2020) Extracellular DNA Promotes Efficient Extracellular Electron Transfer by Pyocyanin in Pseudomonas aeruginosa Biofilms. Cell, 182 (4). pp. 919-932. ISSN 0092-8674. https://resolver.caltech.edu/CaltechAUTHORS:20191213-144717393

Razo-Mejia, Manuel and Marzen, Sarah and Chure, Griffin et al. (2020) First-principles prediction of the information processing capacity of a simple genetic circuit. Physical Review E, 102 (2). Art. No. 022404. ISSN 2470-0045. https://resolver.caltech.edu/CaltechAUTHORS:20190402-080512452

Ruan, Haowen and Liu, Yan and Xu, Jian et al. (2020) Fluorescence imaging through dynamic scattering media with speckle-encoded ultrasound-modulated light correlation. Nature Photonics, 14 (8). pp. 511-516. ISSN 1749-4885. https://resolver.caltech.edu/CaltechAUTHORS:20200324-095704695

Quintero-Cadena, Porfirio and Lenstra, Tineke L. and Sternberg, Paul W. (2020) RNA Pol II Length and Disorder Enable Cooperative Scaling of Transcriptional Bursting. Molecular Cell, 79 (2). pp. 207-220. ISSN 1097-2765. https://resolver.caltech.edu/CaltechAUTHORS:20191031-131636300

Wu, Zhiguang and Chen, Ye and Mukasa, Daniel et al. (2020) Medical micro/nanorobots in complex media. Chemical Society Reviews . ISSN 0306-0012. (In Press) https://resolver.caltech.edu/CaltechAUTHORS:20200706-101709396

Morrison, Muir and Razo-Mejia, Manuel and Phillips, Rob (2020) Reconciling Kinetic and Equilibrium Models of Bacterial Transcription. . (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20200615-130249775

Barlow, Jacob T. and Bogatyrev, Said R. and Ismagilov, Rustem F. (2020) A Quantitative Sequencing Framework for Absolute Abundance Measurements of Mucosal and Lumenal Microbial Communities. Nature Communications, 11 . Art. No. 2590. ISSN 2041-1723. PMCID PMC7244552. https://resolver.caltech.edu/CaltechAUTHORS:20200303-103834329

Xu, Jian and Cao, Ruizhi and Cua, Michelle et al. (2020) Single-shot surface 3D imaging by optical coherence factor. Optics Letters, 45 (7). pp. 1734-1737. ISSN 0146-9592. https://resolver.caltech.edu/CaltechAUTHORS:20200416-121840939

Min, Jihong and Yang, Yiran and Wu, Zhiguang et al. (2020) Robotics in the Gut. Advanced Therapeutics, 3 (4). Art. No. 1900125. ISSN 2366-3987. https://resolver.caltech.edu/CaltechAUTHORS:20190917-132535911

Davis, Hunter C. and Kang, Sunghwi and Lee, Jae-Hyun et al. (2020) Nanoscale Heat Transfer from Magnetic Nanoparticles and Ferritin in an Alternating Magnetic Field. Biophysical Journal, 118 (6). pp. 1502-1510. ISSN 0006-3495. PMCID PMC7091488 . https://resolver.caltech.edu/CaltechAUTHORS:20200203-092720672

2019

Einav, Tal and Yazdi, Shahrzad and Coey, Aaron et al. (2019) Harnessing Avidity: Quantifying the Entropic and Energetic Effects of Linker Length and Rigidity for Multivalent Binding of Antibodies to HIV-1. Cell Systems, 9 (5). pp. 466-474. ISSN 2405-4712. PMCID PMC6892280. https://resolver.caltech.edu/CaltechAUTHORS:20191023-142258650

Song, Yu and Min, Jihong and Gao, Wei (2019) Wearable and Implantable Electronics: Moving toward Precision Therapy. ACS Nano, 13 (11). pp. 12280-12286. ISSN 1936-0851. https://resolver.caltech.edu/CaltechAUTHORS:20191114-134816642

Moen, Erick and Borba, Enrico and Miller, Geneva et al. (2019) Accurate cell tracking and lineage construction in live-cell imaging experiments with deep learning. . (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20191014-100546775

Zhukov, Dmitriy V. and Khorosheva, Eugenia M. and Khazaei, Tahmineh et al. (2019) Microfluidic SlipChip device for multistep multiplexed biochemistry on a nanoliter scale. Lab on a Chip, 19 (19). pp. 3200-3211. ISSN 1473-0197. https://resolver.caltech.edu/CaltechAUTHORS:20190823-090755927

Ramirez-Zamora, Adolfo and Gradinaru, Viviana (2019) Proceedings of the Sixth Deep Brain Stimulation Think Tank Modulation of Brain Networks and Application of Advanced Neuroimaging, Neurophysiology, and Optogenetics. Frontiers in Neuroscience, 13 . Art. No. 936. ISSN 1662-453X. PMCID PMC6751331. https://resolver.caltech.edu/CaltechAUTHORS:20190926-135813898

Chure, Griffin and Razo-Mejia, Manuel and Belliveau, Nathan M. et al. (2019) Predictive shifts in free energy couple mutations to their phenotypic consequences. Proceedings of the National Academy of Sciences of the United States of America, 116 (37). pp. 18275-18284. ISSN 0027-8424. PMCID PMC6744869. https://resolver.caltech.edu/CaltechAUTHORS:20190826-153157241

Yang, Kevin K. and Wu, Zachary and Arnold, Frances H. (2019) Machine-learning-guided directed evolution for protein engineering. Nature Methods, 16 (8). pp. 687-694. ISSN 1548-7091. https://resolver.caltech.edu/CaltechAUTHORS:20190715-092459913

Hanewich-Hollatz, Mikhail H. and Chen, Zhewei and Hochrein, Lisa M. et al. (2019) Conditional Guide RNAs: Programmable Conditional Regulation of CRISPR/Cas Function in Bacterial and Mammalian Cells via Dynamic RNA Nanotechnology. ACS Central Science, 5 (7). pp. 1241-1249. ISSN 2374-7943. PMCID PMC6661866. https://resolver.caltech.edu/CaltechAUTHORS:20190123-124341981

Wu, Zhiguang and Li, Lei and Yang, Yiran et al. (2019) A microrobotic system guided by photoacoustic computed tomography for targeted navigation in intestines in vivo. Science Robotics, 4 (32). Art. No. eaax0613. ISSN 2470-9476. PMCID PMC7337196. https://resolver.caltech.edu/CaltechAUTHORS:20190724-151755826

Einav, Tal and Phillips, Rob (2019) How the avidity of polymerase binding to the –35/–10 promoter sites affects gene expression. Proceedings of the National Academy of Sciences of the United States of America, 116 (27). pp. 13340-13345. ISSN 0027-8424. PMCID PMC6613100. https://resolver.caltech.edu/CaltechAUTHORS:20190405-094702005

Zhang, Juner and Huang, Xiongyi and Zhang, Ruijie K. et al. (2019) Enantiodivergent α-Amino C–H Fluoroalkylation Catalyzed by Engineered Cytochrome P450s. Journal of the American Chemical Society, 141 (25). pp. 9798-9802. ISSN 0002-7863. PMCID PMC6666315. https://resolver.caltech.edu/CaltechAUTHORS:20190607-130827085

Chure, Griffin and Razo-Mejia, Manuel and Belliveau, Nathan M. et al. (2019) The Energetics of Molecular Adaptation in Transcriptional Regulation. . (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20190516-074953419

Rajendran, Pradeep S. and Challis, Rosemary C. and Fowlkes, Charless C. et al. (2019) Identification of peripheral neural circuits that regulate heart rate using optogenetic and viral vector strategies. Nature Communications, 10 . Art. No. 1944. ISSN 2041-1723. PMCID PMC6486614. https://resolver.caltech.edu/CaltechAUTHORS:20181107-092306925

Galstyan, Vahe and Funk, Luke and Einav, Tal et al. (2019) Combinatorial Control through Allostery. Journal of Physical Chemistry B, 123 (13). pp. 2792-2800. ISSN 1520-6106. PMCID PMC6467274. https://resolver.caltech.edu/CaltechAUTHORS:20190102-135256302

Zhang, Xuan and Vyatskikh, Andrey and Gao, Huajian et al. (2019) Lightweight, flaw-tolerant, and ultrastrong nanoarchitected carbon. Proceedings of the National Academy of Sciences of the United States of America, 116 (14). pp. 6665-6672. ISSN 0027-8424. PMCID PMC6452738. https://resolver.caltech.edu/CaltechAUTHORS:20190318-133734983

Yang, Kevin K. and Chen, Yuxin and Lee, Alycia et al. (2019) Batched Stochastic Bayesian Optimization via Combinatorial Constraints Design. Proceedings of Machine Learning Research, 89 . pp. 3410-3419. ISSN 1938-7228. https://resolver.caltech.edu/CaltechAUTHORS:20190905-154254753

Zhang, Ruijie K. and Huang, Xiongyi and Arnold, Frances H. (2019) Selective C-H bond functionalization with engineered heme proteins: new tools to generate complexity. Current Opinion in Chemical Biology, 49 . pp. 67-75. ISSN 1367-5931. PMCID PMC6461521. https://resolver.caltech.edu/CaltechAUTHORS:20181029-094838266

Vyatskikh, Andrey and Ng, Ryan C. and Edwards, Bryce et al. (2019) Additive manufacturing of titanium dioxide for dielectric photonic crystals. In: Advanced Fabrication Technologies for Micro/Nano Optics and Photonics XII. Proceedings of SPIE. No.10930. Society of Photo-optical Instrumentation Engineers (SPIE) , Bellingham, WA, Art. No. 109300H. https://resolver.caltech.edu/CaltechAUTHORS:20190514-124438045

Cho, Inha and Prier, Christopher K. and Jia, Zhi-Jun et al. (2019) Enantioselective Aminohydroxylation of Styrenyl Olefins Catalyzed by an Engineered Hemoprotein. Angewandte Chemie International Edition, 58 (10). pp. 3138-3142. ISSN 1433-7851. https://resolver.caltech.edu/CaltechAUTHORS:20190102-135256908

Challis, Rosemary C. and Ravindra Kumar, Sripriya and Chan, Ken Y. et al. (2019) Systemic AAV vectors for widespread and targeted gene delivery in rodents. Nature Protocols, 14 (2). pp. 379-414. ISSN 1754-2189. https://resolver.caltech.edu/CaltechAUTHORS:20180816-125507808

Abdel-Haq, Reem and Schlachetzki, Johannes C. M. and Glass, Christopher K. et al. (2019) Microbiome–microglia connections via the gut–brain axis. Journal of Experimental Medicine, 216 (1). pp. 41-59. ISSN 0022-1007. PMCID PMC6314531. https://resolver.caltech.edu/CaltechAUTHORS:20181105-090651605

Zhang, Ruijie K. and Chen, Kai and Huang, Xiongyi et al. (2019) Enzymatic assembly of carbon–carbon bonds via iron-catalysed sp^3 C–H functionalization. Nature, 565 (7737). pp. 67-72. ISSN 0028-0836. PMCID PMC6440214. https://resolver.caltech.edu/CaltechAUTHORS:20181025-100754288

Shapero, Aubrey and Agarwal, Abhinav and Martinez, Juan Carlos et al. (2019) Wireless Implantable Intraocular Pressure Sensor with Parylene-Oil-Encapsulation and Forward-Angled RF Coil. In: 2019 IEEE 32nd International Conference on Micro Electro Mechanical Systems (MEMS). IEEE , Piscataway, NJ, pp. 21-24. ISBN 9781728116105. https://resolver.caltech.edu/CaltechAUTHORS:20191025-124827181

2018

Bannon, Dylan and Moen, Erick and Schwartz, Morgan et al. (2018) DeepCell Kiosk: Scaling deep learning-enabled cellular image analysis with Kubernetes. . (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20190916-101510993

Hochrein, Lisa M. and Ge, Tianjia J. and Schwarzkopf, Maayan et al. (2018) Signal Transduction in Human Cell Lysate via Dynamic RNA Nanotechnology. ACS Synthetic Biology, 7 (12). pp. 2796-2802. ISSN 2161-5063. https://resolver.caltech.edu/CaltechAUTHORS:20181030-075958683

Einav, Tal and Gnanapragasam, Priyanthi N. P. and Yazdi, Shahrzad et al. (2018) Modeling Entropic and Energetic Effects of Linker Length and Rigidity within Synthetic HIV-1 Antibodies designed to Bind Bivalently to Env Spikes. . (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20181128-093526917

Rapp, Peter B. and Omar, Ahmad K. and Silverman, Bradley R. et al. (2018) Mechanisms of diffusion in associative polymer networks: evidence for chain hopping. Journal of the American Chemical Society, 140 (43). pp. 14185-14194. ISSN 0002-7863. https://resolver.caltech.edu/CaltechAUTHORS:20181001-131358075

Einav, Tal and Duque, Julia and Phillips, Rob (2018) Theoretical analysis of inducer and operator binding for cyclic-AMP receptor protein mutants. PLoS ONE, 13 (9). Art. No. e0204275. ISSN 1932-6203. PMCID PMC6157895. https://resolver.caltech.edu/CaltechAUTHORS:20181009-105623284

Einav, Tal and Yazdi, Shahrzad and Coey, Aaron et al. (2018) Harnessing Avidity: Quantifying Entropic and Energetic Effects of Linker Length and Rigidity Required for Multivalent Binding of Antibodies to HIV-1 Spikes. . (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20200117-131810813

Galimidi, Rachel P. and Einav, Tal and Gnanapragasam, Priyanthi N. P. et al. (2018) Quantifying the Entropic and Energetic Effects of Linker Length and Rigidity within Synthetic HIV-1 Antibodies designed to Bind Bivalently to Env Spikes. . (Unpublished) https://resolver.caltech.edu/CaltechAUTHORS:20180927-114224268

Yang, Kevin K. and Wu, Zachary and Bedbrook, Claire N. et al. (2018) Learned Protein Embeddings for Machine Learning. Bioinformatics, 34 (15). pp. 2642-2648. ISSN 1367-4803. PMCID PMC6061698; PMC6247922. https://resolver.caltech.edu/CaltechAUTHORS:20180330-110704718

Vyatskikh, Andrey and Kudo, Akira and Delalande, Stéphane et al. (2018) Additive Manufacturing of Polymer-Derived Titania for One-Step Solar Water Purification. Materials Today Communications, 15 . pp. 288-293. ISSN 2352-4928. https://resolver.caltech.edu/CaltechAUTHORS:20180308-103302974

Maresca, David and Lakshmanan, Anupama and Abedi, Mohamad et al. (2018) Biomolecular Ultrasound and Sonogenetics. Annual Review of Chemical and Biomolecular Engineering, 9 . pp. 229-252. ISSN 1947-5438. PMCID PMC6086606. https://resolver.caltech.edu/CaltechAUTHORS:20180330-152125173

Belliveau, Nathan M. and Barnes, Stephanie L. and Ireland, William T. et al. (2018) Systematic approach for dissecting the molecular mechanisms of transcriptional regulation in bacteria. Proceedings of the National Academy of Sciences of the United States of America, 115 (21). E4796-E4805. ISSN 0027-8424. PMCID PMC6003448. https://resolver.caltech.edu/CaltechAUTHORS:20180507-083945479

Huang, Audrey and Sheldan, Benjamin and Sivak, David A. et al. (2018) Physically optimizing inference. . (Submitted) https://resolver.caltech.edu/CaltechAUTHORS:20181022-162450293

Brandenberg, Oliver F. and Prier, Christopher K. and Chen, Kai et al. (2018) Stereoselective Enzymatic Synthesis of Heteroatom-Substituted Cyclopropanes. ACS Catalysis, 8 (4). pp. 2629-2634. ISSN 2155-5435. https://resolver.caltech.edu/CaltechAUTHORS:20180312-085606768

Knight, Anders M. and Kan, S. B. Jennifer and Lewis, Russell D. et al. (2018) Diverse engineered heme proteins enable stereodivergent cyclopropanation of unactivated alkenes. ACS Central Science, 4 (3). pp. 372-377. ISSN 2374-7943. PMCID PMC5879470. https://resolver.caltech.edu/CaltechAUTHORS:20171220-092532762

Vyatskikh, Andrey and Delalande, Stéphane and Kudo, Akira et al. (2018) Additive manufacturing of 3D nano-architected metals. Nature Communications, 9 . Art. No. 593. ISSN 2041-1723. PMCID PMC5807385. https://resolver.caltech.edu/CaltechAUTHORS:20180206-130051890

Jang, Mooseok and Horie, Yu and Shibukawa, Atsushi et al. (2018) Wavefront shaping with disorder-engineered metasurfaces. Nature Photonics, 12 (2). pp. 84-90. ISSN 1749-4885. PMCID PMC5842956. https://resolver.caltech.edu/CaltechAUTHORS:20170815-101915506

Davis, Hunter C. and Ramesh, Pradeep and Bhatnagar, Aadyot et al. (2018) Mapping the microscale origins of magnetic resonance image contrast with subcellular diamond magnetometry. Nature Communications, 9 . Art. No. 131. ISSN 2041-1723. PMCID PMC5760582. https://resolver.caltech.edu/CaltechAUTHORS:20161205-095517669

2017

Qureshi, Muhammad Mohsin and Brake, Joshua and Jeon, Hee-Jae et al. (2017) In vivo study of optical speckle decorrelation time across depths in the mouse brain. Biomedical Optics Express, 8 (11). pp. 4855-4864. ISSN 2156-7085. PMCID PMC5695936; PMC5695950. https://resolver.caltech.edu/CaltechAUTHORS:20171117-083356029

Bedbrook, Claire N. and Yang, Kevin K. and Rice, Austin J. et al. (2017) Machine learning to design integral membrane channelrhodopsins for efficient eukaryotic expression and plasma membrane localization. PLOS Computational Biology, 13 (10). Art. No. e1005786. ISSN 1553-7358. PMCID PMC5695628. https://resolver.caltech.edu/CaltechAUTHORS:20171030-140148566

Obana, Maiko and Silverman, Bradley R. and Tirrell, David A. (2017) Protein-Mediated Colloidal Assembly. Journal of the American Chemical Society, 139 (40). pp. 14251-14256. ISSN 0002-7863. PMCID PMC5672941. https://resolver.caltech.edu/CaltechAUTHORS:20170913-101124804

Hammer, Stephan C. and Knight, Anders M. and Arnold, Frances H. (2017) Design and Evolution of Enzymes for Non-natural Chemistry. Current Opinion in Green and Sustainable Chemistry, 7 . pp. 23-30. ISSN 2452-2236. https://resolver.caltech.edu/CaltechAUTHORS:20170628-110616752

Lakshmanan, Anupama and Lu, George J. and Farhadi, Arash et al. (2017) Preparation of biogenic gas vesicle nanostructures for use as contrast agents for ultrasound and MRI. Nature Protocols, 12 (10). pp. 2050-2080. ISSN 1754-2189. PMCID PMC6185898. https://resolver.caltech.edu/CaltechAUTHORS:20170517-151452626

Glasser, Nathaniel R. and Saunders, Scott H. and Newman, Dianne K. (2017) The Colorful World of Extracellular Electron Shuttles. Annual Review of Microbiology, 71 . pp. 731-751. ISSN 0066-4227. PMCID PMC5679407. https://resolver.caltech.edu/CaltechAUTHORS:20170724-072743727

Prier, Christopher K. and Zhang, Ruijie K. and Buller, Andrew R. et al. (2017) Enantioselective, intermolecular benzylic C–H amination catalysed by an engineered iron-haem enzyme. Nature Chemistry, 9 (7). pp. 629-634. ISSN 1755-4330. PMCID PMC5555633. https://resolver.caltech.edu/CaltechAUTHORS:20170413-120718900

Bedbrook, Claire N. and Rice, Austin J. and Yang, Kevin K. et al. (2017) Structure-guided SCHEMA recombination generates diverse chimeric channelrhodopsins. Proceedings of the National Academy of Sciences of the United States of America, 114 (13). E2624-E2633. ISSN 0027-8424. PMCID PMC5380088. https://resolver.caltech.edu/CaltechAUTHORS:20170310-130542741

Herwig, Lukas and Rice, Austin J. and Bedbrook, Claire N. et al. (2017) Directed Evolution of a Bright Near-Infrared Fluorescent Rhodopsin Using a Synthetic Chromophore. Cell Chemical Biology, 24 (3). pp. 415-425. ISSN 2451-9456. PMCID PMC5357175. https://resolver.caltech.edu/CaltechAUTHORS:20170307-082231020

Phillips, Rob (2017) Membranes by the Numbers. . (Submitted) https://resolver.caltech.edu/CaltechAUTHORS:20180730-091900653

2016

Zhou, Edward Haojiang and Shibukawa, Atsushi and Brake, Joshua et al. (2016) Glare suppression by coherence gated negation. Optica, 3 (10). pp. 1107-1113. ISSN 2334-2536. PMCID PMC5509221. https://resolver.caltech.edu/CaltechAUTHORS:20161010-124426959

Lakshmanan, Anupama and Farhadi, Arash and Nety, Suchita P. et al. (2016) Molecular Engineering of Acoustic Protein Nanostructures. ACS Nano, 10 (8). pp. 7314-7322. ISSN 1936-0851. PMCID PMC6058967. https://resolver.caltech.edu/CaltechAUTHORS:20160714-134344625

Brake, Joshua and Jang, Mooseok and Yang, Changhuei (2016) Analyzing the relationship between decorrelation time and tissue thickness in acute rat brain slices using multispeckle diffusing wave spectroscopy. Journal of the Optical Society of America A, 33 (2). pp. 270-275. ISSN 1084-7529. PMCID PMC4783160. https://resolver.caltech.edu/CaltechAUTHORS:20160218-123702274