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Chen, Peiwei and Luo, Yicheng and Aravin, Alexei A. (2020) RDC complex executes a dynamic piRNA program during Drosophila spermatogenesis to safeguard male fertility. . (Unpublished)

Chen, Peiwei and Kotov, Alexei A. and Godneeva, Baira K. et al. (2020) piRNA-mediated gene regulation and adaptation to sex-specific transposon expression in D. melanogaster male germline. . (Unpublished)

Kuzmenko, Anton and Oguienko, Anastasiya and Esyunina, Daria et al. (2020) DNA targeting and interference by a bacterial Argonaute nuclease. Nature . ISSN 0028-0836. (In Press)

Huang, Xiawei and Hu, Hongmiao and Webster, Alexandre et al. (2020) Binding of guide piRNA triggers methylation of the unstructured N-terminal region of Aub leading to assembly of the piRNA amplification complex. . (Unpublished)

Luo, Yicheng and Fefelova, Elena and Ninova, Maria et al. (2020) Repression of interrupted and intact rDNA by the SUMO pathway in Drosophila melanogaster. . (Unpublished)

Aravin, Alexei A. (2020) Pachytene piRNAs as beneficial regulators or a defense system gone rogue. Nature Genetics, 52 (7). pp. 644-645. ISSN 1061-4036.

Kuzmenko, Anton and Oguienko, Anastasiya and Esyunina, Daria et al. (2020) pAgo-induced DNA interference protects bacteria from invader DNA. . (Unpublished)

Olina, Anna and Kuzmenko, Anton and Ninova, Maria et al. (2020) Genome-wide DNA sampling by Ago nuclease from the cyanobacterium Synechococcus elongatus. RNA Biology, 17 (5). pp. 677-688. ISSN 1547-6286.

Ninova, Maria and Godneeva, Baira and Chen, Yung-Chia Ariel et al. (2020) The SUMO Ligase Su(var)2-10 Controls Hetero- and Euchromatic Gene Expression via Establishing H3K9 Trimethylation and Negative Feedback Regulation. Molecular Cell, 77 (3). pp. 571-585. ISSN 1097-2765. PMCID PMC7007874.

Ninova, Maria and Chen, Yung-Chia Ariel and Godneeva, Baira et al. (2020) Su(var)2-10 and the SUMO Pathway Link piRNA-Guided Target Recognition to Chromatin Silencing. Molecular Cell, 77 (3). pp. 556-570. ISSN 1097-2765. PMCID PMC7007863 .


Ninova, Maria and Fejes Tóth, Katalin and Aravin, Alexei A. (2019) The control of gene expression and cell identity by H3K9 trimethylation. Development, 146 (19). Art. No. dev181180 . ISSN 0950-1991. PMCID PMC6803365 .

Kuzmenko, A. and Yudin, D. and Aravin, A. et al. (2019) Ago nucleases from Clostridium butyricum and Limnothrix rosea can process DNA substrates at moderate temperatures. FEBS Open Bio, 9 (S1). p. 400. ISSN 2211-5463.

Olina, A. and Kudinova, A. and Petrova, M. et al. (2019) Catalytically active Argonaute nuclease from Synechococcus elongatus. FEBS Open Bio, 9 (S1). p. 160. ISSN 2211-5463.

Yudin, D. and Ryazansky, S. and Aravin, A. et al. (2019) Insights into genomic DNA sampling by prokaryotic Argonaute proteins. FEBS Open Bio, 9 (S1). p. 62. ISSN 2211-5463.

Kropocheva, E. and Esyunina, D. and Aravin, A. et al. (2019) Various modes of nucleic acid processing by mesophilic bacterial Argonaute proteins. FEBS Open Bio, 9 (S1). p. 159. ISSN 2211-5463.

Kuzmenko, Anton and Yudin, Denis and Ryazansky, Sergei et al. (2019) Programmable DNA cleavage by Ago nucleases from mesophilic bacteria Clostridium butyricum and Limnothrix rosea. Nucleic Acids Research, 47 (11). pp. 5822-5836. ISSN 0305-1048. PMCID PMC6582412.

Kotov, Alexei A. and Adashev, Vladimir E. and Godneeva, Baira K. et al. (2019) piRNA silencing contributes to interspecies hybrid sterility and reproductive isolation in Drosophila melanogaster. Nucleic Acids Research, 47 (8). pp. 4255-4271. ISSN 0305-1048. PMCID PMC6486647.


Lisitskaya, Lidiya and Aravin, Alexei A. and Kulbachinskiy, Andrey (2018) DNA interference and beyond: structure and functions of prokaryotic Argonaute proteins. Nature Communications, 9 . Art. No. 5165. ISSN 2041-1723. PMCID PMC6279821.

Ryazansky, Sergei and Kulbachinskiy, Andrey and Aravin, Alexei A. (2018) The expanded universe of prokaryotic Argonaute proteins. mBio, 9 (6). Art. No. e01935-18. ISSN 2150-7511. PMCID PMC6299218.

Liu, Yiwei and Esyunina, Daria and Olovnikov, Ivan et al. (2018) Accommodation of Helical Imperfections in Rhodobacter sphaeroides Argonaute Ternary Complexes with Guide RNA and Target DNA. Cell Reports, 24 (2). pp. 453-462. ISSN 2211-1247. PMCID PMC6269105.

Yudin, D. and Ryazansky, S. and Kulbachinskiy, A. et al. (2018) Catalytically active Argonaute proteins from mesophilic bacteria. FEBS Open Bio, 8 (S1). Art. No. P.01-071. ISSN 2211-5463.

Kropocheva, E. and Oguienko, A. and Kudinova, A. et al. (2018) Functional activities of DNA-guided and RNA-guided bacterial Argonaute proteins. FEBS Open Bio, 8 (S1). Art. No. P.01-074. ISSN 2211-5463.

Esyunina, D. and Ninova, M. and Aravin, A. et al. (2018) Highly specific target recognition by an Argonaute protein from Rhodobacter sphaeroides. FEBS Open Bio, 8 (S1). Art. No. P.01-076. ISSN 2211-5463.

Lisitskaya, L. and Petushkov, I. and Esyunina, D. et al. (2018) Interactions of a bacterial Argonaute protein with DNA targets in vitro. FEBS Open Bio, 8 (S1). Art. No. P.18-108. ISSN 2211-5463.

Olina, A. V. and Kulbachinskiy, A. V. and Aravin, A. A. et al. (2018) Argonaute Proteins and Mechanisms of RNA Interference in Eukaryotes and Prokaryotes. Biochemistry (Moscow), 83 (5). pp. 483-497. ISSN 0006-2979.


Huang, Xiawei and Fejes Tóth, Katalin and Aravin, Alexei A. (2017) piRNA Biogenesis in Drosophila melanogaster. Trends in Genetics, 33 (11). pp. 882-894. ISSN 0168-9525. PMCID PMC5773129.

Bamezai, S. and Mulaw, M. and Vegi, N. et al. (2017) PIWIL4 Acts as a piRNA Binding, Epigenetically Active and Growth Regulatory Protein in Human Acute Myeloid Leukemia. Haematologica, 102 (S2). Art. No. S429. ISSN 0390-6078.

Ciabrelli, Filippo and Comoglio, Federico and Fellous, Simon et al. (2017) Stable Polycomb-dependent transgenerational inheritance of chromatin states in Drosophila. Nature Genetics, 49 (6). pp. 876-886. ISSN 1061-4036.


Chen, Yung-Chia Ariel and Stuwe, Evelyn and Luo, Yicheng et al. (2016) Cutoff Suppresses RNA Polymerase II Termination to Ensure Expression of piRNA Precursors. Molecular Cell, 63 (1). pp. 97-109. ISSN 1097-2765. PMCID PMC4980073.

Hur, Junho K. and Luo, Yicheng and Moon, Sungjin et al. (2016) Splicing-independent loading of TREX on nascent RNA is required for efficient expression of dual-strand piRNA clusters in Drosophila. Genes and Development, 30 (7). pp. 840-855. ISSN 0890-9369. PMCID PMC4826399.


Cheloufi, Sihem and Ninova, Maria and Aravin, Alexei (2015) The histone chaperone CAF-1 safeguards somatic cell identity. Nature, 528 (7581). pp. 218-224. ISSN 0028-0836. PMCID PMC4866648.

Manakov, Sergei A. and Pezic, Dubravka and Marinov, Georgi K. et al. (2015) MIWI2 and MILI Have Differential Effects on piRNA Biogenesis and DNA Methylation. Cell Reports, 12 (8). pp. 1234-1243. ISSN 2211-1247. PMCID PMC4554733.

Webster, Alexandre and Li, Sisi and Hur, Junho K. et al. (2015) Aub and Ago3 Are Recruited to Nuage through Two Mechanisms to Form a Ping-Pong Complex Assembled by Krimper. Molecular Cell, 59 (4). pp. 564-575. ISSN 1097-2765. PMCID PMC4545750.

Marinov, Georgi K. and Wang, Jie and Handler, Dominik et al. (2015) Pitfalls of Mapping High-Throughput Sequencing Data to Repetitive Sequences: Piwi’s Genomic Targets Still Not Identified. Developmental Cell, 32 (6). pp. 765-771. ISSN 1534-5807. PMCID PMC4494788.

Chen, Yung-Chia Ariel and Aravin, Alexei A. (2015) Non-coding RNAs in Transcriptional Regulation. Current Molecular Biology Reports, 1 (1). pp. 10-18. ISSN 2198-6428. PMCID PMC4479201.


Pastor, William A. and Stroud, Hume and Nee, Kevin et al. (2014) MORC1 represses transposable elements in the mouse male germline. Nature Communications, 5 (12). Art. No. 5795. ISSN 2041-1723. PMCID PMC4268658, PMC5784397.

Le Thomas, Adrien and Marinov, Georgi K. and Aravin, Alexei A. (2014) A Transgenerational Process Defines piRNA Biogenesis in Drosophila virilis. Cell Reports, 8 (6). pp. 1617-1623. ISSN 2211-1247. PMCID PMC5054749.

Le Thomas, Adrien and Stuwe, Evelyn and Li, Sisi et al. (2014) Transgenerationally inherited piRNAs trigger piRNA biogenesis by changing the chromatin of piRNA clusters and inducing precursor processing. Genes and Development, 28 (15). pp. 1667-1680. ISSN 0890-9369. PMCID PMC4117942.

Molaro, Antoine and Falciatori, Ilaria and Hodges, Emily et al. (2014) Two waves of de novo methylation during mouse germ cell development. Genes and Development, 28 (14). pp. 1544-1549. ISSN 0890-9369. PMCID PMC4102761.

Pezic, Dubravka and Manakov, Sergei A. and Sachidanandam, Ravi et al. (2014) piRNA pathway targets active LINE1 elements to establish the repressive H3K9me3 mark in germ cells. Genes and Development, 28 (13). pp. 1410-1418. ISSN 0890-9369. PMCID PMC4083086.

Hur, Junho K. and Olovnikov, Ivan and Aravin, Alexei A. (2014) Prokaryotic Argonautes defend genomes against invasive DNA. Trends in Biochemical Sciences, 39 (6). pp. 257-259. ISSN 0968-0004. PMCID PMC4041519.

Stuwe, Evelyn and Fejes Tóth, Katalin and Aravin, Alexei A. (2014) Small but sturdy: small RNAs in cellular memory and epigenetics. Genes and Development, 28 (5). pp. 421-431. ISSN 0890-9369. PMCID PMC3950340.

Le Thomas, Adrien and Fejes Tóth, Katalin and Aravin, Alexei A. (2014) To be or not to be a piRNA: genomic origin and processing of piRNAs. Genome Biology, 15 (1). Art. No. 204. ISSN 1465-6906. PMCID PMC4053809.

Olovnikov, Ivan and Le Thomas, Adrien and Aravin, Alexei A. (2014) A Framework for piRNA Cluster Manipulation. In: PIWI-Interacting RNAs: Methods and Protocols. Methods in Molecular Biology. No.1093. Humana Press , New York, NY, pp. 47-58. ISBN 978-1-62703-693-1.


Olovnikov, Ivan and Chan, Ken and Sachidanandam, Ravi et al. (2013) Bacterial Argonaute Samples the Transcriptome to Identify Foreign DNA. Molecular Cell, 51 (5). pp. 594-605. ISSN 1097-2765. PMCID PMC3809076.

Le Thomas, Adrien and Rogers, Alicia K. and Webster, Alexandre et al. (2013) Piwi induces piRNA-guided transcriptional silencing and establishment of a repressive chromatin state. Genes and Development, 27 (4). pp. 390-399. ISSN 0890-9369. PMCID PMC3589556.


Olenkina, O. M. and Egorova, K. S. and Aravin, A. A. et al. (2012) Mapping of cis-regulatory sites in the promoter of testis-specific Stellate genes of Drosophila melanogaster. Biochemistry (Moscow), 77 (11). pp. 1285-1293. ISSN 0006-2979.

Olovnikov, Ivan and Aravin, Alexei A. and Fejes Toth, Katalin (2012) Small RNA in the nucleus: the RNA-chromatin ping-pong. Current Opinion in Genetics and Development, 22 (2). pp. 164-171. ISSN 1879-0380. PMCID PMC3345048.

Muerdter, Felix and Olovnikov, Ivan and Molaro, Antoine et al. (2012) Production of artificial piRNAs in flies and mice. RNA, 18 (1). pp. 42-52. ISSN 1355-8382. PMCID PMC3261743.


Siomi, Mikiko C. and Sato, Kaoru and Pezic, Dubravka et al. (2011) PIWI-interacting small RNAs: the vanguard of genome defence. Nature Reviews. Molecular Cell Biology, 12 (4). pp. 246-258. ISSN 1471-0072.

Aravin, Alexei A. and Chan, David C. (2011) piRNAs Meet Mitochondria. Developmental Cell, 20 (3). pp. 287-288. ISSN 1534-5807.


Rozhkov, Nikolay V. and Aravin, Alexei A. and Zelentsova, Elena S. et al. (2010) Small RNA-based silencing strategies for transposons in the process of invading Drosophila species. RNA, 16 (8). pp. 1634-1645. ISSN 1355-8382. PMCID PMC2905761.

Rozhkov, N. V. and Aravin, A. A. and Sachidanandam, R. et al. (2010) RNA interference system differently responds to the same mobile element in distant Drosophila species. Doklady Biochemistry and Biophysics, 431 (1). pp. 79-81. ISSN 1607-6729. PMCID PMC2998894.


Vagin, Vasily V. and Hannon, Gregory J. and Aravin, Alexei A. (2009) Arginine methylation as a molecular signature of the Piwi small RNA pathway. Cell Cycle, 8 (24). pp. 4003-4004. ISSN 1538-4101. PMCID PMC2993161.

Aravin, Alexei A. and van der Heijden, Godfried W. and Castañeda, Julio et al. (2009) Cytoplasmic Compartmentalization of the Fetal piRNA Pathway in Mice. PLOS Genetics, 5 (12). Art. No. e1000764. ISSN 1553-7404. PMCID PMC2785470.

Vagin, Vasily V. and Wohlschlegel, James and Qu, Jun et al. (2009) Proteomic analysis of murine Piwi proteins reveals a role for arginine methylation in specifying interaction with Tudor family members. Genes and Development, 23 (15). pp. 1749-1762. ISSN 0890-9369. PMCID PMC2720255.


Brennecke, Julius and Malone, Colin D. and Aravin, Alexei A. et al. (2008) An Epigenetic Role for Maternally Inherited piRNAs in Transposon Silencing. Science, 322 (5906). pp. 1387-1392. ISSN 0036-8075. PMCID PMC2805124.

Aravin, Alexei A. and Sachidanandam, Ravi and Bourc'his, Deborah et al. (2008) A piRNA Pathway Primed by Individual Transposons Is Linked to De Novo DNA Methylation in Mice. Molecular Cell, 31 (6). pp. 785-799. ISSN 1097-2765. PMCID PMC2730041.

Tam, Oliver H. and Aravin, Alexei A. and Stein, Paula et al. (2008) Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes. Nature, 453 (7194). pp. 534-538. ISSN 0028-0836. PMCID PMC2981145.

Aravin, Alexei A. and Bourc'his, Déborah (2008) Small RNA guides for de novo DNA methylation in mammalian germ cells. Genes and Development, 22 (8). pp. 970-975. ISSN 0890-9369. PMCID PMC2732394.

Olson, A. J. and Brennecke, J. and Aravin, A. A. et al. (2008) Analysis of Large-Scale Sequencing of Small RNAs. In: Pacific Symposium on Biocomputing 2008. World Scientific , Hackensack, NJ, pp. 126-136. ISBN 9789812776082.

Aravin, A. A. and Hannon, G. J. (2008) Small RNA Silencing Pathways in Germ and Stem Cells. In: Control and regulation of stem cells. Cold Spring Harbor Symposia on Quantitative Biology . No.73. Cold Spring Harbor Laboratory , New York, NY, pp. 283-290. ISBN 978-087969862-1.


Aravin, Alexei A. and Hannon, Gregory J. and Brennecke, Julius (2007) The Piwi-piRNA Pathway Provides an Adaptive Defense in the Transposon Arms Race. Science, 318 (5851). pp. 761-764. ISSN 0036-8075.

Klenov, Mikhail S. and Lavrov, Sergey A. and Stolyarenko, Anastasia D. et al. (2007) Repeat-associated siRNAs cause chromatin silencing of retrotransposons in the Drosophila melanogaster germline. Nucleic Acids Research, 35 (16). pp. 5430-5438. ISSN 1362-4962. PMCID PMC2018648.

Aravin, Alexei A. and Sachidanandam, Ravi and Girard, Angelique et al. (2007) Developmentally Regulated piRNA Clusters Implicate MILI in Transposon Control. Science, 316 (5825). pp. 744-747. ISSN 0036-8075.

Brennecke, Julius and Aravin, Alexei A. and Stark, Alexander et al. (2007) Discrete Small RNA-Generating Loci as Master Regulators of Transposon Activity in Drosophila. Cell, 128 (6). pp. 1089-1103. ISSN 0092-8674.


Aravin, Alexei A. and Klenov, Mikhail S. and Vagin, Vasilii V. et al. (2004) Dissection of a Natural RNA Silencing Process in the Drosophila melanogaster Germ Line. Molecular and Cellular Biology, 24 (15). pp. 6742-6750. ISSN 0270-7306. PMCID PMC444866.


Aravin, Alexei A. and Lagos-Quintana, Mariana and Yalcin, Abdullah et al. (2003) Small RNA Profile during Drosophila melanogaster Development. Developmental Cell, 5 (2). pp. 337-350. ISSN 1534-5807.

Kogan, G. L. and Tulin, A. V. and Aravin, A. A. et al. (2003) GATE retrotransposon in Drosophila melanogaster: mobility in heterochromatin and aspects of its expression in germline tissues. Molecular Genetics and Genomics, 269 (2). pp. 234-242. ISSN 1617-4615.

Gvozdev, Vladimir A. and Aravin, Alexei A. and Abramov, Yury A. et al. (2003) Stellate Repeats: Targets of Silencing and Modules Causing cis-Inactivation and trans-Activation. Genetica, 117 (2-3). pp. 239-245. ISSN 0016-6707.


Aravin, A. A. and Vagin, V. V. and Naumova, N. M. et al. (2002) [The phenomenon of RNA interference and development of organism]. Ontogenez, 33 (5). pp. 349-360. ISSN 0475-1450.

Aravin, A. A. and Klenov, M. S. and Vagin, V. V. et al. (2002) Role of Double-Stranded RNA in Eukaryotic Gene Silencing. Molecular Biology, 36 (2). pp. 180-188. ISSN 0026-8933.


Aravin, Alexei A. and Naumova, Natalia M. and Tulin, Alexei V. et al. (2001) Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in the D. melanogaster germline. Current Biology, 11 (13). pp. 1017-1027. ISSN 0960-9822.

Aravin, A. A. and Vagin, V. V. and Rozovsky, Ya. M. et al. (2001) Inhibition of Gene Expression by Homologous Double-Stranded RNA in a Drosophila melanogaster Cell Culture. Russian Journal of Genetics, 37 (6). pp. 639-642. ISSN 1022-7954.


Gvozdev, Vladimir A. and Kogan, Galina L. and Tulin, Alexei A. et al. (2000) Paralogous Stellate and Su(Ste) repeats: evolution and ability to silence a reporter gene. Genetica, 109 (1-2). pp. 131-140. ISSN 0016-6707.

Kogan, Galina L. and Epstein, Vitalii N. and Aravin, Alexei A. et al. (2000) Molecular Evolution of Two Paralogous Tandemly Repeated Heterochromatic Gene Clusters Linked to the X and Y Chromosomes of Drosophila melanogaster. Molecular Biology and Evolution, 17 (5). pp. 697-702. ISSN 1537-1719.

Aravin, A. A. and Naumova, N. M. and Tulin, A. V. et al. (2000) [The study of interaction between paralogous tandem repeats stellate and suppressor of stellate in the genome of Drosophila melanogaster]. Genetika, 36 (4). pp. 581-584. ISSN 0016-6758.


Gvozdev, V. A. and Alatortsev, V. E. and Aravin, A. A. et al. (1999) [Heterochromatin: molecular evolution and effects of gene location in Drosophila melanogaster]. Molekuliarnaia biologiia, 33 (1). pp. 14-25. ISSN 0026-8984.


Aravin, Alexey A. and Yurchenko, Vyacheslav Yu. and Merzlyak, Ekaterina M. et al. (1998) The mitochondrial ND8 gene from Crithidia oncopelti is not pan-edited. FEBS Letters, 431 (3). pp. 457-460. ISSN 0014-5793.

Tulin, A. V. and Naumova, N. M. and Aravin, A. A. et al. (1998) Repeated, protein-encoding heterochromatic genes cause inactivation of a juxtaposed euchromatic gene. FEBS Letters, 425 (3). pp. 513-516. ISSN 0014-5793.

This list was generated on Sun Sep 20 10:53:24 2020 PDT.