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Leu, Andy O. and Cai, Chen and McIlroy, Simon J. et al. (2020) Anaerobic methane oxidation coupled to manganese reduction by members of the Methanoperedenaceae. ISME Journal, 14 (4). pp. 1030-1041. ISSN 1751-7362.

Leu, Andy O. and McIlroy, Simon J. and Ye, Jun et al. (2020) Lateral gene transfer drives metabolic flexibility in the anaerobic methane oxidising archaeal family Methanoperedenaceae. . (Unpublished)


Goffredi, Shana K. and Tilic, Ekin and Mullin, Sean W. et al. (2019) Sequestration of Methane by Symbiotic Deep-Sea Annelids: Ancient and Future Implications of Redefining the Seep Influence. . (Unpublished)

Bird, Laurence R. and Dawson, Katherine S. and Chadwick, Grayson L. et al. (2019) Carbon isotopic heterogeneity of coenzyme F430 and membrane lipids in methane‐oxidizing archaea. Geobiology, 17 (6). pp. 611-627. ISSN 1472-4677.

Bublitz, DeAnna C. and Chadwick, Grayson L. and Magyar, John S. et al. (2019) Peptidoglycan Production by an Insect-Bacterial Mosaic. Cell, 179 (3). pp. 703-712. ISSN 0092-8674. PMCID PMC6838666.

Chadwick, Grayson L. and Jiménez-Otero, Fernanda and Gralnick, Jeffrey A. et al. (2019) NanoSIMS imaging reveals metabolic stratification within current-producing biofilms. Proceedings of the National Academy of Sciences of the United States of America, 116 (41). pp. 20716-20724. ISSN 0027-8424. PMCID PMC6789570.

Speth, Daan R. and Orphan, Victoria J. (2019) ASM-Clust: classifying functionally diverse protein families using alignment score matrices. . (Unpublished)

Cavicchioli, Ricardo and Orphan, Victoria J. (2019) Scientists’ warning to humanity: microorganisms and climate change. Nature Reviews Microbiology, 17 (9). pp. 569-586. ISSN 1740-1526.

Arrojo e Drigo, Rafael and Lev-Ram, Varda and Tyagi, Swati et al. (2019) Age Mosaicism across Multiple Scales in Adult Tissues. Cell Metabolism, 30 (2). pp. 343-351. ISSN 1550-4131.

Sapers, Haley M. and Razzell Hollis, Joseph and Bhartia, Rohit et al. (2019) The Cell and the Sum of Its Parts: Patterns of Complexity in Biosignatures as Revealed by Deep UV Raman Spectroscopy. Frontiers in Microbiology, 10 . Art. No. 679. ISSN 1664-302X.

Boyd, Joel A. and Jungbluth, Sean P. and Leu, Andy O. et al. (2019) Divergent methyl-coenzyme M reductase genes in a deep-subseafloor Archaeoglobi. ISME Journal, 13 (5). pp. 1269-1279. ISSN 1751-7362. PMCID PMC6474303.

Amend, Jan and Feyhl-Buska, Jayme and Wu, Fabai et al. (2019) Calorimetric determination of microbial activity in low-​energy environments. In: 257th ACS National Meeting & Exposition, 31 March-4 April 2019, Orlando, FL.

Murali, Ranjani and Hemp, James and Orphan, Victoria et al. (2019) FIND: Identifying Functionally and Structurally Important Features in Protein Sequences with Deep Neural Networks. . (Unpublished)

Sim, Min Sub and Sessions, Alex L. and Orphan, Victoria J. et al. (2019) Precise determination of equilibrium sulfur isotope effects during volatilization and deprotonation of dissolved H_2S. Geochimica et Cosmochimica Acta, 248 . pp. 242-251. ISSN 0016-7037.

He, Xiaojia and Chadwick, Grayson and Kempes, Christopher et al. (2019) Microbial interactions in the anaerobic oxidation of methane: Model simulations constrained by process rates and activity patterns. Environmental Microbiology, 21 (2). pp. 631-647. ISSN 1462-2912.

Stamenković, V. and Fischer, W. W. and Kirschvink, J. L. et al. (2019) The next frontier for planetary and human exploration. Nature Astronomy, 3 (2). pp. 116-120. ISSN 2397-3366.

Sim, Min Sub and Ogata, Hideaki and Lubitz, Wolfgang et al. (2019) Role of APS reductase in biogeochemical sulfur isotope fractionation. Nature Communications, 10 . Art. No. 44. ISSN 2041-1723. PMCID 30626879.


Yu, Hang and Susanti, Dwi and McGlynn, Shawn E. et al. (2018) Comparative Genomics and Proteomic Analysis of Assimilatory Sulfate Reduction Pathways in Anaerobic Methanotrophic Archaea. Frontiers in Microbiology, 9 . Art. No. 2917. ISSN 1664-302X. PMCID PMC6286981.

Dekas, Anne E. and Fike, David A. and Chadwick, Grayson L. et al. (2018) Widespread nitrogen fixation in sediments from diverse deep-sea sites of elevated carbon loading. Environmental Microbiology, 20 (12). pp. 4281-4296. ISSN 1462-2912.

Chadwick, Grayson L. and Hemp, James and Fischer, Woodward W. et al. (2018) Convergent evolution of unusual complex I homologs with increased proton pumping capacity: energetic and ecological implications. ISME Journal, 12 (11). pp. 2668-2680. ISSN 1751-7362. PMCID PMC6194058.

Yung, Yuk L. and Chen, Pin and Nealson, Kenneth et al. (2018) Methane on Mars and Habitability: Challenges and Responses. Astrobiology, 18 (10). pp. 1221-1242. ISSN 1557-8070. PMCID PMC6205098.

Michel, Alice J. and Ward, Lewis M. and Goffredi, Shana K. et al. (2018) The gut of the finch: uniqueness of the gut microbiome of the Galápagos vampire finch. Microbiome, 6 . Art. No. 167. ISSN 2049-2618. PMCID PMC6146768.

Speth, Daan R. and Orphan, Victoria J. (2018) Metabolic marker gene mining provides insight in global mcrA diversity and, coupled with targeted genome reconstruction, sheds further light on metabolic potential of the Methanomassiliicoccales. PeerJ, 2018 (6). Art. No. e5614. ISSN 2167-8359. PMCID PMC6147122.

Ijiri, Akira and Case, David H. and Orphan, Victoria J. (2018) Deep-biosphere methane production stimulated by geofluids in the Nankai accretionary complex. Science Advances, 4 (6). Art. No. eaao4631. ISSN 2375-2548. PMCID PMC6007163.

McGlynn, Shawn E. and Chadwick, Grayson L. and O'Neill, Ariel et al. (2018) Subgroup characteristics of marine methane-oxidizing ANME-2 archaea and their syntrophic partners revealed by integrated multimodal analytical microscopy. Applied and Environmental Microbiology, 84 (11). Art. No. e00399-18. ISSN 0099-2240. PMCID PMC5960974.

Zhu, Ying and Zhao, Rui and Piehowski, Paul D. et al. (2018) Subnanogram proteomics: impact of LC column selection, MS instrumentation and data analysis strategy on proteome coverage for trace samples. International Journal of Mass Spectrometry, 427 . pp. 4-10. ISSN 1387-3806. PMCID PMC5863755.

Pasulka, Alexis L. and Thamatrakoln, Kimberlee and Kopf, Sebastian H. et al. (2018) Interrogating marine virus-host interactions and elemental transfer with BONCAT and nanoSIMS-based methods. Environmental Microbiology, 20 (2). pp. 671-692. ISSN 1462-2912.

Yung, Yuk L. and Chen, Pin and Nealson, Kenneth et al. (2018) Methane on Mars and Habitability: Challenges and Responses. , Pasadena, CA. doi:10.7907/Z990220K.


Fike, D. A. and Houghton, J. L. and Moore, S. E. et al. (2017) Spatially resolved capture of hydrogen sulfide from the water column and sedimentary pore waters for abundance and stable isotopic analysis. Marine Chemistry, 197 . pp. 26-37. ISSN 0304-4203.

Case, David H. and Ijiri, Akira and Morono, Yuki et al. (2017) Aerobic and Anaerobic Methanotrophic Communities Associated with Methane Hydrates Exposed on the Seafloor: A High-Pressure Sampling and Stable Isotope-Incubation Experiment. Frontiers in Microbiology, 8 . Art. No. 2569. ISSN 1664-302X. PMCID PMC5742206.

Trembath-Reichert, Elizabeth and Morono, Yuki and Ijiri, Akira et al. (2017) Methyl-compound use and slow growth characterize microbial life in 2-km-deep subseafloor coal and shale beds. Proceedings of the National Academy of Sciences of the United States of America, 114 (44). E9206-E9215. ISSN 0027-8424. PMCID PMC5676895.

Terrado, Ramon and Pasulka, Alexis L. and Lie, Alle A.-Y. et al. (2017) Autotrophic and heterotrophic acquisition of carbon and nitrogen by a mixotrophic chrysophyte established through stable isotope analysis. ISME Journal, 11 (9). pp. 2022-2034. ISSN 1751-7362. PMCID PMC5563956.

Skennerton, Connor T. and Chourey, Karuna and Iyer, Ramsunder et al. (2017) Methane-Fueled Syntrophy through Extracellular Electron Transfer: Uncovering the Genomic Traits Conserved within Diverse Bacterial Partners of Anaerobic Methanotrophic Archaea. mBio, 8 (4). Art. No. e00530-17. ISSN 2150-7511. PMCID PMC5539420, PMC5626972.

Marlow, Jeffrey J. and Steele, Joshua A. and Ziebis, Wiebke et al. (2017) Monodeuterated Methane, an Isotopic Tool To Assess Biological Methane Metabolism Rates. mSphere, 2 (4). Art. No. e00309. ISSN 2379-5042. PMCID PMC5566838.

Sim, Min Sub and Paris, Guillaume and Adkins, Jess F. et al. (2017) Quantification and isotopic analysis of intracellular sulfur metabolites in the dissimilatory sulfate reduction pathway. Geochimica et Cosmochimica Acta, 206 . pp. 57-72. ISSN 0016-7037.

Glass, Jennifer B. and Chen, Si and Dawson, Katherine S. et al. (2017) Trace Metal Imaging of Sulfate-Reducing Bacteria and Methanogenic Archaea at Single-Cell Resolution by Synchrotron X-Ray Fluorescence Imaging. Geomicrobiology Journal, 35 (1). pp. 81-89. ISSN 0149-0451.

Smith, Derek A. and Sessions, Alex L. and Dalleska, Nathan et al. (2017) Rapid Quantification and Isotopic Analysis of Dissolved Sulfur Species. Rapid Communications in Mass Spectrometry, 31 (9). pp. 791-803. ISSN 0951-4198.

Tavormina, Patricia L. and Kellermann, Matthias Y. and Antony, Chakkiath Paul et al. (2017) Starvation and recovery in the deep-sea methanotroph Methyloprofundus sedimenti. Molecular Microbiology, 103 (2). pp. 242-252. ISSN 0950-382X.


Skennerton, Connor T. and Haroon, Mohamed F. and Briegel, Ariane et al. (2016) Phylogenomic analysis of Candidatus ‘Izimaplasma’ species: free-living representatives from a Tenericutes clade found in methane seeps. ISME Journal, 10 (11). pp. 2679-2692. ISSN 1751-7362. PMCID PMC5113845.

Magyar, Paul M. and Orphan, Victoria J. and Eiler, John M. (2016) Measurement of rare isotopologues of nitrous oxide by high-resolution multi-collector mass spectrometry. Rapid Communications in Mass Spectrometry, 30 (17). pp. 1923-1940. ISSN 0951-4198.

Pasulka, Alexis L. and Levin, Lisa A. and Steele, Josh A. et al. (2016) Microbial eukaryotic distributions and diversity patterns in a deep-sea methane seep ecosystem. Environmental Microbiology, 18 (9). pp. 3022-3043. ISSN 1462-2912.

Miranda, Priscilla J. and McLain, Nathan K. and Hatzenpichler, Roland et al. (2016) Characterization of Chemosynthetic Microbial Mats Associated with Intertidal Hydrothermal Sulfur Vents in White Point, San Pedro, CA, USA. Frontiers in Microbiology, 7 . Art. No. 1163. ISSN 1664-302X. PMCID PMC4961709.

Fradet, Danielle T. and Tavormina, Patricia L. and Orphan, Victoria J. (2016) Members of the methanotrophic genus Methylomarinum inhabit inland mud pots. PeerJ, 4 . Art. No. e2116. ISSN 2167-8359. PMCID PMC4950536.

Hatzenpichler, Roland and Connon, Stephanie A. and Goudeau, Danielle et al. (2016) Visualizing in situ translational activity for identifying and sorting slow-growing archaeal−bacterial consortia. Proceedings of the National Academy of Sciences of the United States of America, 113 (28). E4069-E4078. ISSN 0027-8424. PMCID PMC4948357.

Dawson, Katherine S. and Scheller, Silvan and Dillon, Jesse G. et al. (2016) Stable Isotope Phenotyping via Cluster Analysis of NanoSIMS Data As a Method for Characterizing Distinct Microbial Ecophysiologies and Sulfur-Cycling in the Environment. Frontiers in Microbiology, 7 . Art. No. 774. ISSN 1664-302X. PMCID PMC4881376.

Marlow, Jeffrey J. and Skennerton, Connor T. and Li, Zhou et al. (2016) Proteomic Stable Isotope Probing Reveals Biosynthesis Dynamics of Slow Growing Methane Based Microbial Communities. Frontiers in Microbiology, 7 . Art. No. 563. ISSN 1664-302X. PMCID PMC4850331.

Trembath-Reichert, Elizabeth and Case, David H. and Orphan, Victoria J. (2016) Characterization of microbial associations with methanotrophic archaea and sulfate-reducing bacteria through statistical comparison of nested Magneto-FISH enrichments. PeerJ, 4 . Art. No. e1913. ISSN 2167-8359. PMCID PMC4841229.

Dekas, Anne E. and Connon, Stephanie A. and Chadwick, Grayson L. et al. (2016) Activity and interactions of methane seep microorganisms assessed by parallel transcription and FISH-NanoSIMS analyses. ISME Journal, 10 (3). pp. 678-692. ISSN 1751-7362. PMCID PMC4817681.

Scheller, Silvan and Yu, Hang and Chadwick, Grayson L. et al. (2016) Artificial electron acceptors decouple archaeal methane oxidation from sulfate reduction. Science, 351 (6274). pp. 703-707. ISSN 0036-8075.

Kopf, Sebastian H. and Sessions, Alex L. and Cowley, Elise S. et al. (2016) Trace incorporation of heavy water reveals slow and heterogeneous pathogen growth rates in cystic fibrosis sputum. Proceedings of the National Academy of Sciences of the United States of America, 113 (2). E110-E116. ISSN 0027-8424. PMCID PMC4720290.


Skennerton, Connor T. and Ward, Lewis M. and Michel, Alice et al. (2015) Genomic Reconstruction of an Uncultured Hydrothermal Vent Gammaproteobacterial Methanotroph (Family Methylothermaceae) Indicates Multiple Adaptations to Oxygen Limitation. Frontiers in Microbiology, 6 . Art. No. 1425. ISSN 1664-302X. PMCID PMC4688376.

Case, David H. and Pasulka, Alexis L. and Marlow, Jeffrey J. et al. (2015) Methane Seep Carbonates Host Distinct, Diverse, and Dynamic Microbial Assemblages. mBio, 6 (6). Art. No. e01348-15. ISSN 2150-7511. PMCID PMC4701829.

Alivisatos, A. P. and Blaser, M. J. and Brodie, E. L. et al. (2015) A unified initiative to harness Earth's microbiomes. Science, 350 (6260). pp. 507-508. ISSN 0036-8075.

Evans, Paul N. and Parks, Donovan H. and Chadwick, Grayson L. et al. (2015) Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics. Science, 350 (6259). pp. 434-438. ISSN 0036-8075.

McGlynn, Shawn E. and Chadwick, Grayson L. and Kempes, Christopher P. et al. (2015) Single cell activity reveals direct electron transfer in methanotrophic consortia. Nature, 526 (7574). pp. 531-535. ISSN 0028-0836.

Mason, Olivia U. and Case, David H. and Naehr, Thomas H. et al. (2015) Comparison of Archaeal and Bacterial Diversity in Methane Seep Carbonate Nodules and Host Sediments, Eel River Basin and Hydrate Ridge, USA. Microbial Ecology, 70 (3). pp. 766-784. ISSN 0095-3628.

Bryson, Samuel Joseph and Thurber, Andrew R. and Correa, Adrienne M. S. et al. (2015) A novel sister clade to the enterobacteria microviruses (family Microviridae) identified in methane seep sediments. Environmental Microbiology, 17 (10). pp. 3708-3721. ISSN 1462-2912.

Dawson, K. S. and Osburn, M. R. and Sessions, A. L. et al. (2015) Metabolic associations with archaea drive shifts in hydrogen isotope fractionation in sulfate-reducing bacterial lipids in cocultures and methane seeps. Geobiology, 13 (5). pp. 462-477. ISSN 1472-4677.

Marlow, J. and Peckmann, J. and Orphan, V. (2015) Autoendoliths: a distinct type of rock-hosted microbial life. Geobiology, 13 (4). pp. 303-307. ISSN 1472-4677.

Kopf, Sebastian H. and McGlynn, Shawn E. and Green-Saxena, Abigail et al. (2015) Heavy water and ¹⁵N labeling with NanoSIMS analysis reveals growth-rate dependent metabolic heterogeneity in chemostats. Environmental Microbiology, 17 (7). pp. 2542-2556. ISSN 1462-2912. PMCID PMC4587896.

Hatzenpichler, Roland and Orphan, Victoria J. (2015) Detection of Protein-Synthesizing Microorganisms in the Environment via Bioorthogonal Noncanonical Amino Acid Tagging (BONCAT). In: Hydrocarbon and Lipid Microbiology Protocols: Single-Cell and Single-Molecule Methods. Springer , Berlin, pp. 145-157. ISBN 978-3-662-49129-4.

Tavormina, Patricia L. and Hatzenpichler, Roland and McGlynn, Shawn E. et al. (2015) Methyloprofundus sedimenti gen. nov., sp. nov., an obligate methanotroph from ocean sediment belonging to the ‘deep sea-1’ clade of marine methanotrophs. International Journal of Systematic and Evolutionary Microbiology, 65 (1). pp. 251-259. ISSN 1466-5026.


Wilbanks, Elizabeth G. and Jaekel, Ulrike and Salman, Verena et al. (2014) Microscale sulfur cycling in the phototrophic pink berry consortia of the Sippewissett Salt Marsh. Environmental Microbiology, 16 (11). pp. 3398-3415. ISSN 1462-2912. PMCID PMC4262008.

Houghton, J. and Fike, D. and Druschel, G. et al. (2014) Spatial variability in photosynthetic and heterotrophic activity drives localized δ^(13)C_(org) fluctuations and carbonate precipitation in hypersaline microbial mats. Geobiology, 12 (6). pp. 557-574. ISSN 1472-4677.

Sivan, Orit and Antler, Gilad and Turchyn, Alexandra V. et al. (2014) Iron oxides stimulate sulfate-driven anaerobic methane oxidation in seeps. Proceedings of the National Academy of Sciences of the United States of America, 111 (40). E4139-E4147. ISSN 0027-8424. PMCID PMC4209987.

Marlow, Jeffrey J. and Steele, Joshua A. and Ziebis, Wiebke et al. (2014) Carbonate-hosted methanotrophy represents an unrecognized methane sink in the deep sea. Nature Communications, 5 (10). Art. No. 6094. ISSN 2041-1723.

Dekas, Anne E. and Chadwick, Grayson L. and Bowles, Marshall W. et al. (2014) Spatial distribution of nitrogen fixation in methane seep sediment and the role of the ANME archaea. Environmental Microbiology, 16 (10). pp. 3012-3029. ISSN 1462-2912.

Hatzenpichler, Roland and Scheller, Silvan and Tavormina, Patricia L. et al. (2014) In situ visualization of newly synthesized proteins in environmental microbes using amino acid tagging and click chemistry. Environmental Microbiology, 16 (8). pp. 2568-2590. ISSN 1462-2912. PMCID PMC4122687.

Glass, Jennifer B. and Yu, Hang and Steele, Joshua A. et al. (2014) Geochemical, metagenomic and metaproteomic insights into trace metal utilization by methane-oxidizing microbial consortia in sulphidic marine sediments. Environmental Microbiology, 16 (6). pp. 1592-1633. ISSN 1462-2912.

Crespo-Medina, M. and Meile, C. D. and Hunter, K. S. et al. (2014) The rise and fall of methanotrophy following a deepwater oil-well blowout. Nature Geoscience, 7 (6). pp. 423-427. ISSN 1752-0894.

Marlow, Jeffrey J. and LaRowe, Douglas E. and Ehlmann, Bethany L. et al. (2014) The Potential for Biologically Catalyzed Anaerobic Methane Oxidation on Ancient Mars. Astrobiology, 14 (4). pp. 292-307. ISSN 1557-8070.

Sapir, Amir and Dillman, Adler R. and Connon, Stephanie A. et al. (2014) Microsporidia-nematode associations in methane seeps reveal basal fungal parasitism in the deep sea. Frontiers in Microbiology, 5 . Art. No. 43. ISSN 1664-302X. PMCID PMC3918590.

Green-Saxena, A. and Dekas, A. E. and Dalleska, N. F. et al. (2014) Nitrate-based niche differentiation by distinct sulfate-reducing bacteria involved in the anaerobic oxidation of methane. ISME Journal, 8 (1). pp. 150-163. ISSN 1751-7362. PMCID PMC3869021.


Bailey, J. V. and Corsetti, F. A. and Greene, S. E. et al. (2013) Filamentous sulfur bacteria preserved in modern and ancient phosphatic sediments: implications for the role of oxygen and bacteria in phosphogenesis. Geobiology, 11 (5). pp. 397-405. ISSN 1472-4677.

Tocheva, Elitza I. and Dekas, Anne E. and McGlynn, Shawn E. et al. (2013) Polyphosphate Storage during Sporulation in the Gram-Negative Bacterium Acetonema longum. Journal of Bacteriology, 195 (17). pp. 3940-3946. ISSN 0021-9193. PMCID PMC3754598.

Ussler, William, III and Preston, Christina and Tavormina, Patricia et al. (2013) Autonomous Application of Quantitative PCR in the Deep Sea: In Situ Surveys of Aerobic Methanotrophs Using the Deep-Sea Environmental Sample Processor. Environmental Science and Technology, 47 (16). pp. 9339-9346. ISSN 0013-936X.

Tavormina, Patricia L. and Ussler, William, III and Steele, Joshua A. et al. (2013) Abundance and distribution of diverse membrane-bound monooxygenase (Cu-MMO) genes within the Costa Rica oxygen minimum zone. Environmental Microbiology Reports, 5 (3). pp. 414-423. ISSN 1758-2229.

Yang, Song and Matsen, Janet B. and Kunopka, Michael et al. (2013) Global molecular analyses of methane metabolism in methanotrophic Alphaproteobacterium, Methylosinus trichosporium OB3b. Part II. metabolomics and 13C-labeling study. Frontiers in Microbiology, 4 . Art. No. 70. ISSN 1664-302X. PMCID PMC3615224.

Druschel, Greg K. and Kafantaris, Fotios and Orphan, Victoria J. et al. (2013) High resolution profiling of sulfur and oxygen speciation in microbial mats: Implications for coupling of hydrogen peroxide with sulfur species. In: 245th ACS National Meeting & Exposition, Abstracts of Papers, 7-11 April 2013, New Orleans, LA.

McGlynn, Shawn E. and Boyd, Eric S. and Peters, John W. et al. (2013) Classifying the metal dependence of uncharacterized nitrogenases. Frontiers in Microbiology, 3 . Art. No. 419. ISSN 1664-302X. PMCID PMC3578447.

Trembath-Reichert, Elizabeth and Green-Saxena, Abigail and Orphan, Victoria J. (2013) Whole Cell Immunomagnetic Enrichment of Environmental Microbial Consortia Using rRNA-Targeted Magneto-FISH. In: Microbial Metagenomics, Metatranscriptomics, and Metaproteomics. Methods in Enzymology. No.531. Academic Press , pp. 21-44. ISBN 9780124078635.


Green-Saxena, A. and Feyzullayev, A. and Hubert, C. R. J. et al. (2012) Active sulfur cycling by diverse mesophilic and thermophilic microorganisms in terrestrial mud volcanoes of Azerbaijan. Environmental Microbiology, 14 (12). pp. 3271-3286. ISSN 1462-2912.

Magyar, Paul and Kopf, Sebastian and Orphan, Victoria et al. (2012) Measurement of nitrous oxide isotopologues and isotopomers by the MAT 253 Ultra. Mineralogical Magazine, 76 (6). p. 2054. ISSN 0026-461X.

Polz, Martin and Orphan, Victoria and Bonfante, Paola (2012) Environmental Microbiology: evolution of your premier journal. Environmental Microbiology, 14 (10). pp. 2617-2619. ISSN 1462-2912.

Thurber, Andrew R. and Levin, Lisa A. and Orphan, Victoria J. et al. (2012) Archaea in metazoan diets: implications for food webs and biogeochemical cycling. ISME Journal, 6 (8). pp. 1602-1612. ISSN 1751-7362. PMCID PMC3400411.

Levin, Lisa A. and Orphan, Victoria J. and Rouse, Greg W. et al. (2012) A hydrothermal seep on the Costa Rica margin: middle ground in a continuum of reducing ecosystems. Proceedings of the Royal Society of London. Series B, Biological Sciences, 279 (1738). pp. 2580-2588. ISSN 0962-8452. PMCID PMC3350710.

Harrison, Benjamin K. and Orphan, Victoria J. (2012) Method for Assessing Mineral Composition-Dependent Patterns in Microbial Diversity Using Magnetic and Density Separation. Geomicrobiology Journal, 29 (5). pp. 435-449. ISSN 0149-0451.

Glass, Jennifer B. and Orphan, Victoria J. (2012) Trace metal requirements for microbial enzymes involved in the production and consumption of methane and nitrous oxide. Frontiers in Microbiology, 3 . Art. No. 61. ISSN 1664-302X. PMCID PMC3282944.

Newman, Dianne K. and Orphan, Victoria J. and Reysenbach, Anna-Louise (2012) Molecular biology's contributions to geobiology. In: Fundamentals of Geobiology. Wiley-Blackwell , Hoboken, NJ, pp. 228-249. ISBN 9781118280812.


Bailey, Jake V. and Salman, Verena and Rouse, Gregory W. et al. (2011) Dimorphism in methane seep-dwelling ecotypes of the largest known bacteria. ISME Journal, 5 (12). pp. 1926-1935. ISSN 1751-7362. PMCID PMC3223306.

House, Christopher H. and Beal, Emily J. and Orphan, Victoria J. (2011) The Apparent Involvement of ANMEs in Mineral Dependent Methane Oxidation, as an Analog for Possible Martian Methanotrophy. Life, 1 (1). pp. 19-33. ISSN 2075-1729. PMCID PMC4187123.

Orphan, Victoria J. and Hoehler, Tori M. (2011) Microbiology: Hydrogen for dinner. Nature, 476 (7359). pp. 154-155. ISSN 0028-0836.

Shapiro, Orr H. and Hatzenpichler, Roland and Buckley, Daniel H. et al. (2011) Multicellular photo-magnetotactic bacteria. Environmental Microbiology Reports, 3 (2). pp. 233-238. ISSN 1758-2229.

Orphan, Victoria (2011) Fish-Sims: Characterizing the Metabolic Potential and Interspecies Interactions between Uncultured Environmental Microorganisms. Biophysical Journal, 100 (3, S1). 37a. ISSN 0006-3495.

Orphan, Victoria J. (2011) Getting cozy: hidden microbial interactions in nature. Environmental Microbiology Reports, 3 (1). pp. 16-18. ISSN 1758-2229.

Tavormina, Patricia L. and Orphan, Victoria J. and Kalyuzhnaya, Marina G. et al. (2011) A novel family of functional operons encoding methane/ammonia monooxygenase-related proteins in gammaproteobacterial methanotrophs. Environmental Microbiology Reports, 3 (1). pp. 91-100. ISSN 1758-2229.

Dekas, Anne E. and Orphan, Victoria J. (2011) Identification of Diazotrophic Microorganisms in Marine Sediment via Fluorescence In Situ Hybridization Coupled to Nanoscale Secondary Ion Mass Spectrometry (FISH-NanoSIMS). In: Research on Nitrification and Related Processes. Methods in Enzymology . No.486. Elsevier , Amsterdam, pp. 281-305. ISBN 9780123812940.


Tavormina, Patricia L. and Ussler, William, III and Joye, Samantha B. et al. (2010) Distributions of putative aerobic methanotrophs in diverse pelagic marine environments. ISME Journal, 4 (5). pp. 700-710. ISSN 1751-7362.

Goffredi, Shana K. and Orphan, Victoria J. (2010) Bacterial community shifts in taxa and diversity in response to localized organic loading in the deep sea. Environmental Microbiology, 12 (2). pp. 344-363. ISSN 1462-2912.

Bailey, Jake V. and Raub, Timothy D. and Meckler, A. Nele et al. (2010) Pseudofossils in relict methane seep carbonates resemble endemic microbial consortia. Palaeogeography, Palaeoclimatology, Palaeoecology, 285 (1-2). pp. 131-142. ISSN 0031-0182.


Bailey, Jake V. and Orphan, Victoria J. and Joye, Samantha B. et al. (2009) Chemotrophic Microbial Mats and Their Potential for Preservation in the Rock Record. Astrobiology, 9 (9). pp. 843-859. ISSN 1557-8070.

Dekas, Anne E. and Poretsky, Rachel S. and Orphan, Victoria J. (2009) Deep-Sea Archaea Fix and Share Nitrogen in Methane-Consuming Microbial Consortia. Science, 326 (5951). pp. 422-426. ISSN 0036-8075.

Fike, David A. and Finke, Niko and Zha, Jessica et al. (2009) The effect of sulfate concentration on (sub)millimeter-scale sulfide δ^(34)S in hypersaline cyanobacterial mats over the diurnal cycle. Geochimica et Cosmochimica Acta, 73 (20). pp. 6187-6204. ISSN 0016-7037.

House, Christopher H. and Orphan, Victoria J. and Turk, Kendra A. et al. (2009) Extensive carbon isotopic heterogeneity among methane seep microbiota. Environmental Microbiology, 11 (9). pp. 2207-2215. ISSN 1462-2912.

Beal, Emily J. and House, Christopher H. and Orphan, Victoria J. (2009) Manganese- and iron-dependent marine methane oxidation. Science, 325 (5937). pp. 184-187. ISSN 0036-8075.

Orphan, Victoria J. and Turk, Kendra A. and Green, Abigail M. et al. (2009) Patterns of ^(15)N assimilation and growth of methanotrophic ANME-2 archaea and sulfate-reducing bacteria within structured syntrophic consortia revealed by FISH-SIMS. Environmental Microbiology, 11 (7). pp. 1777-1791. ISSN 1462-2912.

Orphan, V. J. and House, C. H. (2009) Geobiological investigations using secondary ion mass spectrometry: microanalysis of extant and paleo-microbial processes. Geobiology, 7 (3). pp. 360-372. ISSN 1472-4677.

Fike, David A. and Orphan, Victoria J. (2009) High resolution SIMS-based sulfide δ^(34)S: A new tool for characterizing microbial activity in a variety of depositional environments. Geochimica et Cosmochimica Acta, 73 (13, S). A375. ISSN 0016-7037.

Orphan, Victoria J. (2009) Methods for unveiling cryptic microbial partnerships in nature. Current Opinion in Microbiology, 12 (3). pp. 231-237. ISSN 1369-5274.

Harrison, Benjamin K. and Zhang, Husen and Berelson, Will et al. (2009) Variations in archaeal and bacterial diversity associated with the sulfate-methane transition zone in continental margin sediments (Santa Barbara Basin, California). Applied and Environmental Microbiology, 75 (6). pp. 1487-1499. ISSN 0099-2240. PMCID PMC2655439.


Orphan, V. J. and Jahnke, L. L. and Embaye, T. et al. (2008) Characterization and spatial distribution of methanogens and methanogenic biosignatures in hypersaline microbial mats of Baja California. Geobiology, 6 (4). pp. 376-393. ISSN 1472-4677.

Jahnke, L. L. and Orphan, V. J. and Embaye, T. et al. (2008) Lipid biomarker and phylogenetic analyses to reveal archaeal biodiversity and distribution in hypersaline microbial mat and underlying sediment. Geobiology, 6 (4). pp. 394-410. ISSN 1472-4677.

Fike, David A. and Gammon, Crystal L. and Finke, Niko et al. (2008) Micron-scale mapping of sulfur cycling across the oxycline of a cyanobacterial mat. Geochimica et Cosmochimica Acta, 72 (12). A268. ISSN 0016-7037.

Fike, David Andrew and Gammon, Crystal Lynn and Ziebis, Wiebke et al. (2008) Micron-scale mapping of sulfur cycling across the oxycline of a cyanobacterial mat: a paired nanoSIMS and CARD-FISH approach. ISME Journal, 2 (7). pp. 749-759. ISSN 1751-7362.

Tavormina, Patricia L. and Ussler, William, III and Orphan, Victoria J. (2008) Planktonic and sediment-associated aerobic methanotrophs in two seep systems along the North American margin. Applied and Environmental Microbiology, 74 (13). pp. 3985-3995. ISSN 0099-2240. PMCID PMC2446507.

Pernthaler, Annelie and Dekas, Anne E. and Brown, C. Titus et al. (2008) Diverse syntrophic partnerships from deep-sea methane vents revealed by direct cell capture and metagenomics. Proceedings of the National Academy of Sciences of the United States of America, 105 (19). pp. 7052-7057. ISSN 0027-8424. PMCID PMC2383945.

Goffredi, Shana K. and Wilpiszeski, Regina and Lee, Ray et al. (2008) Temporal evolution of methane cycling and phylogenetic diversity of archaea in sediments from a deep-sea whale-fall in Monterey Canyon, California. ISME Journal, 2 (2). pp. 204-220. ISSN 1751-7362.

Moran, James J. and Beal, Emily J. and Vrentas, Jennifer M. et al. (2008) Methyl sulfides as intermediates in the anaerobic oxidation of methane. Environmental Microbiology, 10 (1). pp. 162-173. ISSN 1462-2912.

Orphan, Victoria J. and House, Christopher H. and Goffredi, Shana K. (2008) Archaea, Methane, and Oases of the Deep. Nova Acta Leopoldina, 96 (356). pp. 19-23. ISSN 0369-5034.


Fike, David and Ussler, William and Eiler, John et al. (2007) Micron-scale resolution of sulfur cycling in a microbial mat. Geochimica et Cosmochimica Acta, 71 (15). A278. ISSN 0016-7037.

Orphan, Victoria J. and Pernthaler, Annelie and Dekas, Anne E. et al. (2007) The ties that bind: Dynamics of syntrophic associations in marine methane seeps. Geochimica et Cosmochimica Acta, 71 (15, S). A743. ISSN 0016-7037.

Naehr, Thomas H. and Eichhubl, Peter and Orphan, Victoria J. et al. (2007) Authigenic carbonate formation at hydrocarbon seeps in continental margin sediments: A comparative study. Deep-Sea Research. Part II, Topical Studies in Oceanography, 54 (11-13). pp. 1268-1291. ISSN 0967-0645.

Treude, Tina and Orphan, Victoria J. and Knittel, Katrin et al. (2007) Consumption of Methane and CO_2 by Methanotrophic Microbial Mats from Gas Seeps of the Anoxic Black Sea. Applied and Environmental Microbiology, 73 (7). pp. 2271-2283. ISSN 0099-2240. PMCID PMC1855681.


House, Christopher H. and Biddle, Jennifer F. and Lipp, Julius S. et al. (2006) Linking molecular taxonomy with environmental geochemsitry in environments relevant to astrobiology: The anaerobic oxidation of methane in cold seeps & deeply buried marine sediments. Origins of life and evolution of the biosphere, 36 (3). pp. 314-315. ISSN 0169-6149.


Goffredi, Shana K. and Orphan, Victoria J. and Rouse, Greg W. et al. (2005) Evolutionary innovation: a bone-eating marine symbiosis. Environmental Microbiology, 7 (9). pp. 1369-1378. ISSN 1462-2912.


Orphan, V. J. and Ussler, W., III and Naehr, T. H. et al. (2004) Geological, geochemical, and microbiological heterogeneity of the seafloor around methane vents in the Eel River Basin, offshore California. Chemical Geology, 205 (3-4). pp. 265-289. ISSN 0009-2541.

Goffredi, Shana K. and Warén, Anders and Orphan, Victoria J. et al. (2004) Novel Forms of Structural Integration between Microbes and a Hydrothermal Vent Gastropod from the Indian Ocean. Applied and Environmental Microbiology, 70 (5). pp. 3082-3090. ISSN 0099-2240. PMCID PMC404406.


Girguis, Peter R. and Orphan, Victoria J. and Hallam, Steven J. et al. (2003) Growth and Methane Oxidation Rates of Anaerobic Methanotrophic Archaea in a Continuous-Flow Bioreactor. Applied and Environmental Microbiology, 69 (9). pp. 5472-5482. ISSN 0099-2240. PMCID PMC194967.

Orphan, V. J. and Goffredi, S. K. and DeLong, E. F. et al. (2003) Geochemical Influence on Diversity and Microbial Processes in High Temperature Oil Reservoirs. Geomicrobiology Journal, 20 (4). pp. 295-311. ISSN 0149-0451.


Orphan, V. J. and House, C. H. and Hinrichs, K.-U. et al. (2002) Direct phylogenetic and isotopic evidence for multiple groups of archaea involved in the anaerobic oxidation of methane. Geochimica et Cosmochimica Acta, 66 (S1). A571. ISSN 0016-7037.

Orphan, Victoria J. and House, Christopher H. and Hinrichs, Kai-Uwe et al. (2002) Multiple archaeal groups mediate methane oxidation in anoxic cold seep sediments. Proceedings of the National Academy of Sciences of the United States of America, 99 (11). pp. 7663-7668. ISSN 0027-8424. PMCID PMC124316.


Orphan, Victoria J. and House, Christopher H. and Hinrichs, Kai-Uwe et al. (2001) Methane-Consuming Archaea Revealed by Directly Coupled Isotopic and Phylogenetic Analysis. Science, 293 (5529). pp. 484-487. ISSN 0036-8075.

Orphan, V. J. and Hinrichs, K.-U. and Ussler, W., III et al. (2001) Comparative Analysis of Methane-Oxidizing Archaea and Sulfate-Reducing Bacteria in Anoxic Marine Sediments. Applied and Environmental Microbiology, 67 (4). pp. 1922-1934. ISSN 0099-2240. PMCID PMC92814.


Hinrichs, Kai-Uwe and Summons, Roger E. and Orphan, Victoria et al. (2000) Molecular and isotopic analysis of anaerobic methane-oxidizing communities in marine sediments. Organic Geochemistry, 31 (12). pp. 1685-1701. ISSN 0146-6380.

Orphan, V. J. and Taylor, L. T. and Hafenbradl, D. et al. (2000) Culture-Dependent and Culture-Independent Characterization of Microbial Assemblages Associated with High-Temperature Petroleum Reservoirs. Applied and Environmental Microbiology, 66 (2). pp. 700-711. ISSN 0099-2240. PMCID PMC91884.

This list was generated on Tue Mar 31 13:29:26 2020 PDT.