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Items where Person is "Pierce-N-A"

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Number of items: 45.

2020

Schwarzkopf, Maayan and Choi, Harry M. T. and Pierce, Niles A. (2020) Multiplexed Quantitative In Situ Hybridization for Mammalian Cells on a Slide: qHCR and dHCR Imaging (v3.0). In: In Situ Hybridization Protocols. Methods in Molecular Biology. No.2148. Humana Press , New York, NY, pp. 143-156. ISBN 978-1-0716-0622-3. https://resolver.caltech.edu/CaltechAUTHORS:20200518-143331174

Schwarzkopf, Maayan and Choi, Harry M. T. and Pierce, Niles A. (2020) Multiplexed Quantitative In Situ Hybridization for Mammalian or Bacterial Cells in Suspension: qHCR Flow Cytometry (v3.0). In: In Situ Hybridization Protocols. Methods in Molecular Biology. No.2148. Humana Press , New York, NY, pp. 127-141. ISBN 978-1-0716-0622-3. https://resolver.caltech.edu/CaltechAUTHORS:20200518-144322691

Choi, Harry M. T. and Schwarzkopf, Maayan and Pierce, Niles A. (2020) Multiplexed Quantitative In Situ Hybridization with Subcellular or Single-Molecule Resolution Within Whole-Mount Vertebrate Embryos: qHCR and dHCR Imaging (v3.0). In: In Situ Hybridization Protocols. Methods in Molecular Biology. No.2148. Humana Press , New York, NY, pp. 159-178. ISBN 978-1-0716-0622-3. https://resolver.caltech.edu/CaltechAUTHORS:20200518-142723478

2019

Hanewich-Hollatz, Mikhail H. and Chen, Zhewei and Hochrein, Lisa M. et al. (2019) Conditional Guide RNAs: Programmable Conditional Regulation of CRISPR/Cas Function in Bacterial and Mammalian Cells via Dynamic RNA Nanotechnology. ACS Central Science, 5 (7). pp. 1241-1249. ISSN 2374-7943. PMCID PMC6661866. https://resolver.caltech.edu/CaltechAUTHORS:20190123-124341981

2018

Hochrein, Lisa M. and Ge, Tianjia J. and Schwarzkopf, Maayan et al. (2018) Signal Transduction in Human Cell Lysate via Dynamic RNA Nanotechnology. ACS Synthetic Biology, 7 (12). pp. 2796-2802. ISSN 2161-5063. https://resolver.caltech.edu/CaltechAUTHORS:20181030-075958683

Choi, Harry M. T. and Schwarzkopf, Maayan and Fornace, Mark E. et al. (2018) Third-generation in situ hybridization chain reaction: multiplexed, quantitative, sensitive, versatile, robust. Development, 145 (12). Art. No. dev165753. ISSN 0950-1991. PMCID PMC6031405. https://resolver.caltech.edu/CaltechAUTHORS:20180702-084055324

Trivedi, Vikas and Choi, Harry M. T. and Fraser, Scott E. et al. (2018) Multidimensional quantitative analysis of mRNA expression within intact vertebrate embryos. Development, 145 (1). Art. No. 156869. ISSN 0950-1991. PMCID PMC5825878. https://resolver.caltech.edu/CaltechAUTHORS:20180110-083122477

2017

Wolfe, Brian R. and Porubsky, Nicholas J. and Zadeh, Joseph N. et al. (2017) Constrained Multistate Sequence Design for Nucleic Acid Reaction Pathway Engineering. Journal of the American Chemical Society, 139 (8). pp. 3134-3144. ISSN 0002-7863. https://resolver.caltech.edu/CaltechAUTHORS:20170213-164458132

2016

Choi, Harry M. T. and Calvert, Colby R. and Husain, Naeem et al. (2016) Mapping a multiplexed zoo of mRNA expression. Development, 143 (19). pp. 3632-3637. ISSN 0950-1991. PMCID PMC5087610. https://resolver.caltech.edu/CaltechAUTHORS:20161011-070233463

Schwarzkopf, Maayan and Pierce, Niles A. (2016) Multiplexed miRNA northern blots via hybridization chain reaction. Nucleic Acids Research, 44 (15). Art. No. e129. ISSN 0305-1048. PMCID PMC5009741. https://resolver.caltech.edu/CaltechAUTHORS:20160610-141528257

Shah, Sheel and Lubeck, Eric and Schwarzkopf, Maayan et al. (2016) Single-molecule RNA detection at depth via hybridization chain reaction and tissue hydrogel embedding and clearing. Development, 143 (15). pp. 2862-2867. ISSN 0950-1991. PMCID PMC5004914. https://resolver.caltech.edu/CaltechAUTHORS:20160628-085406782

2015

Wolfe, Brian R. and Pierce, Niles A. (2015) Sequence Design for a Test Tube of Interacting Nucleic Acid Strands. ACS Synthetic Biology, 4 (10). pp. 1086-1100. ISSN 2161-5063. https://resolver.caltech.edu/CaltechAUTHORS:20141027-090434819

Huss, David and Choi, Harry M. T. and Readhead, Carol et al. (2015) Combinatorial Analysis of mRNA Expression Patterns in Mouse Embryos Using Hybridization Chain Reaction. Cold Spring Harbor Protocols, 2015 (3). pp. 259-268. ISSN 1940-3402. https://resolver.caltech.edu/CaltechAUTHORS:20150311-133810360

2014

Choi, Harry M. T. and Beck, Victor A. and Pierce, Niles A. (2014) Multiplexed In Situ Hybridization Using Hybridization Chain Reaction. Zebrafish, 11 (5). pp. 488-489. ISSN 1557-8542. https://resolver.caltech.edu/CaltechAUTHORS:20141013-100900538

Sternberg, Jonathan B. and Pierce, Niles A. (2014) Exquisite Sequence Selectivity with Small Conditional RNAs. Nano Letters, 14 (8). pp. 4568-4572. ISSN 1530-6984. PMCID PMC4134187. https://resolver.caltech.edu/CaltechAUTHORS:20140919-101701968

Choi, Harry M. T. and Beck, Victor A. and Pierce, Niles A. (2014) Next-Generation in Situ Hybridization Chain Reaction: Higher Gain, Lower Cost, Greater Durability. ACS Nano, 8 (5). pp. 4284-4294. ISSN 1936-0851. PMCID PMC4046802. https://resolver.caltech.edu/CaltechAUTHORS:20140414-095156294

Sadowski, John P. and Calvert, Colby R. and Zhang, David Yu et al. (2014) Developmental Self-Assembly of a DNA Tetrahedron. ACS Nano, 8 (4). pp. 3251-3259. ISSN 1936-0851. PMCID PMC4004324. https://resolver.caltech.edu/CaltechAUTHORS:20140603-072449619

Vieregg, Jeffrey and Pierce, Niles A. (2014) Selective Nucleic Acid Capture with Shielded Covalent Probes. Biophysical Journal, 106 (2). 617A. ISSN 0006-3495. https://resolver.caltech.edu/CaltechAUTHORS:20140710-084440757

2013

Hochrein, Lisa M. and Schwarzkopf, Maayan and Shahgholi, Mona et al. (2013) Conditional Dicer Substrate Formation via Shape and Sequence Transduction with Small Conditional RNAs. Journal of the American Chemical Society, 135 (46). pp. 17322-17330. ISSN 0002-7863. PMCID PMC3842090. https://resolver.caltech.edu/CaltechAUTHORS:20131205-083955291

Rosenthal, Adam Z. and Zhang, Xinning and Lucey, Kaitlyn S. et al. (2013) Localizing transcripts to single cells suggests an important role of uncultured deltaproteobacteria in the termite gut hydrogen economy. Proceedings of the National Academy of Sciences of the United States of America, 110 (40). pp. 16163-16168. ISSN 0027-8424. PMCID PMC3791709. https://resolver.caltech.edu/CaltechAUTHORS:20130930-102728287

Vieregg, Jeffrey R. and Nelson, Hosea M. and Stoltz, Brian M. et al. (2013) Selective Nucleic Acid Capture with Shielded Covalent Probes. Journal of the American Chemical Society, 135 (26). pp. 9691-9699. ISSN 0002-7863. PMCID PMC3703666. https://resolver.caltech.edu/CaltechAUTHORS:20130905-155148025

Vieregg, Jeffrey R. and Pierce, Niles A. (2013) Selective oligonucleotide and mRNA pull-down with shielded covalent probes. In: 245th ACS National Meeting & Exposition, Abstracts of Papers, April 7-11, 2013, New Orleans, LA. https://resolver.caltech.edu/CaltechAUTHORS:20130801-081334911

Vieregg, Jeffrey R. and Pierce, Niles A. (2013) Selective Oligonucleotide and MRNA Pull-Down with Shielded Covalent Probes. Biophysical Journal, 104 (2). 500A. ISSN 0006-3495. https://resolver.caltech.edu/CaltechAUTHORS:20130501-084442039

2012

Vieregg, Jeffrey R. and Nelson, Hosea and Stoltz, Brian et al. (2012) Sensitive and selective nucleic acid capture with shielded covalent probes. In: 244th ACS National Meeting & Exposition, August 19-23, 2012, Philadelphia, PA. https://resolver.caltech.edu/CaltechAUTHORS:20120822-154455462

2011

Zadeh, Joseph N. and Wolfe, Brian R. and Pierce, Niles A. (2011) Nucleic Acid Sequence Design via Efficient Ensemble Defect Optimization. Journal of Computational Chemistry, 32 (3). pp. 439-452. ISSN 0192-8651. https://resolver.caltech.edu/CaltechAUTHORS:20110202-095344276

Zadeh, Joseph N. and Steenberg, Conrad D. and Bois, Justin S. et al. (2011) NUPACK: Analysis and design of nucleic acid systems. Journal of Computational Chemistry, 32 (1). pp. 170-173. ISSN 0192-8651. https://resolver.caltech.edu/CaltechAUTHORS:20170224-152102280

2010

Choi, Harry M. T. and Chang, Joann Y. and Trinh, Le A. et al. (2010) Programmable in situ amplification for multiplexed imaging of mRNA expression. Nature Biotechnology, 28 (11). pp. 1208-1212. ISSN 1087-0156. PMCID PMC3058322. https://resolver.caltech.edu/CaltechAUTHORS:20160112-090928317

2008

Yin, Peng and Choi, Harry M. T. and Calvert, Colby R. et al. (2008) Programming biomolecular self-assembly pathways. Nature, 451 (7176). pp. 318-322. ISSN 0028-0836. https://resolver.caltech.edu/CaltechAUTHORS:20170224-143742507

2007

Venkataraman, Suvir and Dirks, Robert M. and Rothemund, Paul W. K. et al. (2007) An autonomous polymerization motor powered by DNA hybridization. Nature Nanotechnology, 2 (8). pp. 490-494. ISSN 1748-3387. https://resolver.caltech.edu/CaltechAUTHORS:20110216-154211699

Dirks, Robert M. and Bois, Justin S. and Schaeffer, Joseph M. et al. (2007) Thermodynamic Analysis of Interacting Nucleic Acid Strands. SIAM Review, 49 (1). pp. 65-88. ISSN 0036-1445. https://resolver.caltech.edu/CaltechAUTHORS:DIRsiamrev07

2006

Shin, Jong-Shik and Pierce, Niles A. (2006) Nanoscale Molecular Transport by Synthetic DNA Machines. In: Nanotechnology: Science and Computation. Natural Computing Series. Springer , Berlin, pp. 175-188. ISBN 978-3-540-30295-7. https://resolver.caltech.edu/CaltechAUTHORS:20191015-134801443

Soloveichik, David and Winfree, Erik (2006) Complexity of compact proofreading for self-assembled patterns. In: DNA Computing. Lecture Notes in Computer Science. No.3892. Springer , Berlin, pp. 305-324. ISBN 3-540-34161-7. https://resolver.caltech.edu/CaltechAUTHORS:20110309-104201054

2005

Bois, Justin S. and Venkataraman, Suvir and Choi, Harry M. T. et al. (2005) Topological constraints in nucleic acid hybridization kinetics. Nucleic Acids Research, 33 (13). pp. 4090-4095. ISSN 0305-1048. PMCID PMC1180668. https://resolver.caltech.edu/CaltechAUTHORS:BOInar05

2004

Dirks, Robert M. and Pierce, Niles A. (2004) Triggered amplification by hybridization chain reaction. Proceedings of the National Academy of Sciences of the United States of America, 101 (43). pp. 15275-15278. ISSN 0027-8424. PMCID PMC524468. https://resolver.caltech.edu/CaltechAUTHORS:DIRpnas04

Shin, Jong-Shik and Pierce, Niles A. (2004) A Synthetic DNA Walker for Molecular Transport. Journal of the American Chemical Society, 126 (35). pp. 10834-10835. ISSN 0002-7863. https://resolver.caltech.edu/CaltechAUTHORS:20170224-152823096

Dirks, Robert M. and Pierce, Niles A. (2004) An algorithm for computing nucleic acid base‐pairing probabilities including pseudoknots. Journal of Computational Chemistry, 25 (10). pp. 1295-1304. ISSN 0192-8651. https://resolver.caltech.edu/CaltechAUTHORS:20190503-151608000

Shin, Jong-Shik and Pierce, Niles A. (2004) Rewritable Memory by Controllable Nanopatterning of DNA. Nano Letters, 4 (5). pp. 905-909. ISSN 1530-6984. https://resolver.caltech.edu/CaltechAUTHORS:20170802-102130134

Giles, Michael B. and Pierce, Niles and Süli, Endre (2004) Progress in adjoint error correction for integral functionals. Computing and Visualization in Science, 6 (2-3). pp. 113-121. ISSN 1432-9360. https://resolver.caltech.edu/CaltechAUTHORS:20200221-132333124

Dirks, Robert M. and Lin, Milo and Winfree, Erik et al. (2004) Paradigms for computational nucleic acid design. Nucleic Acids Research, 32 (4). pp. 1392-1403. ISSN 0305-1048. PMCID PMC390280. https://resolver.caltech.edu/CaltechAUTHORS:20110309-104203820

2003

Dirks, Robert M. and Pierce, Niles A. (2003) A Partition Function Algorithm for Nucleic Acid Secondary Structure Including Pseudoknots. Journal of Computational Chemistry, 24 (13). pp. 1664-1677. ISSN 0192-8651. https://resolver.caltech.edu/CaltechAUTHORS:20170227-084204047

Gordon, D. Benjamin and Hom, Geoffrey K. and Mayo, Stephen L. et al. (2003) Exact rotamer optimization for protein design. Journal of Computational Chemistry, 24 (2). pp. 232-243. ISSN 0192-8651. https://resolver.caltech.edu/CaltechAUTHORS:20110913-173425474

2002

Pierce, Niles A. and Winfree, Erik (2002) Protein Design is NP-hard. Protein Engineering, 15 (10). pp. 779-782. ISSN 0269-2139. https://resolver.caltech.edu/CaltechAUTHORS:PIEpeds02

2001

Giles, Michael B. and Pierce, Niles A. (2001) Analytic adjoint solutions for the quasi-one-dimensional Euler equations. Journal of Fluid Mechanics, 426 . pp. 327-345. ISSN 0022-1120. https://resolver.caltech.edu/CaltechAUTHORS:GILjfm01

2000

Pierce, Niles A. and Spriet, Jan A. and Desmet, Johan et al. (2000) Conformational splitting: a more powerful criterion for dead-end elimination. Journal of Computational Chemistry, 21 (11). pp. 999-1009. ISSN 0192-8651. https://resolver.caltech.edu/CaltechAUTHORS:20110620-160432187

Pierce, Niles A. and Giles, Michael B. (2000) Adjoint recovery of superconvergent functionals from PDE approximations. SIAM Review, 42 (2). pp. 247-264. ISSN 0036-1445. https://resolver.caltech.edu/CaltechAUTHORS:PIEsiamrev00

This list was generated on Wed Aug 12 10:05:05 2020 PDT.